TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139747.4 + phase: 0 
         (500 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP065719                                                               50  7e-07
TC12706 UP|Q7X9C0 (Q7X9C0) NIN-like protein 2, complete                32  0.31
BP052828                                                               31  0.54
AV775353                                                               30  0.91
AV407955                                                               27  5.9
TC12011 similar to UP|SY71_ARATH (Q9SF29) Syntaxin 71 (AtSYP71),...    27  5.9
TC9924 UP|RBL_LOTJA (Q9BBU1) Ribulose bisphosphate carboxylase l...    27  5.9
TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13...    27  5.9
TC17075 similar to UP|Q7Y0H8 (Q7Y0H8) Cinnamoyl CoA reductase, p...    27  7.7

>BP065719 
          Length = 567

 Score = 50.4 bits (119), Expect = 7e-07
 Identities = 33/119 (27%), Positives = 55/119 (45%)
 Frame = +3

Query: 46  QFFGSPTEDPNLHVSIFLRLSGTLKANQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWN 105
           +F G   E    H++ +   +G L  N E +++  FP SL   A  WF +L   S+ +W 
Sbjct: 195 KFSGDSGESTVEHIARYQIEAGDLAIN-ENLKMKYFPSSLTKNAFTWFTTLAPRSVHTWA 371

Query: 106 QMRKAFLSQFFPHSKTAQLRSQITQFTQKDGESLYDAWERFKKMLRLCPHHGFENWLII 164
           Q+ + F  QFF   +       +    +K  ES+ D   RF+ +   C  H  E+ L++
Sbjct: 372 QLERIFHEQFF-RGECKVSXKDLASVKRKPAESIDDYLNRFRMLKSRCFTHVSEHELVV 545


>TC12706 UP|Q7X9C0 (Q7X9C0) NIN-like protein 2, complete
          Length = 3814

 Score = 31.6 bits (70), Expect = 0.31
 Identities = 25/97 (25%), Positives = 40/97 (40%), Gaps = 4/97 (4%)
 Frame = +3

Query: 69   LKANQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQI 128
            + ANQ++V+  L    LR++          GS   +NQ+      Q   +  TA+    +
Sbjct: 2016 INANQDSVQKSLKASRLRNK----------GSKPPYNQVSNGSRRQVEKNRGTAEKNVSL 2165

Query: 129  TQFTQKDGESLYDAWERF----KKMLRLCPHHGFENW 161
            +   Q    SL DA +        + R+C HHG   W
Sbjct: 2166 SVLQQHFSGSLKDAAKSIGVCPTTLKRICRHHGISRW 2276


>BP052828 
          Length = 523

 Score = 30.8 bits (68), Expect = 0.54
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 461 IESFSTPCVIESETIEKAMCDLGENLRLMPLSLWERLGIG 500
           I++   PC I     E  M DLG  + +MP S++  L  G
Sbjct: 53  IQALCYPCTIGDNKYENCMLDLGAGINVMPTSIYNILHPG 172


>AV775353 
          Length = 463

 Score = 30.0 bits (66), Expect = 0.91
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 144 ERFKKMLRLCPHHGFENWLIIHTFYNG 170
           ++  +  + C HH F +WL++H F +G
Sbjct: 237 QQMPRASQFCEHHCFAHWLVLHQFGSG 317


>AV407955 
          Length = 402

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 15/43 (34%), Positives = 23/43 (52%)
 Frame = -2

Query: 80  LFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTA 122
           LFP S+RDR+  +     +G   S  ++R  FL++ F    TA
Sbjct: 143 LFP*SVRDRSGDFSWDA*VGETFSEGELRVEFLAELFSF*ATA 15


>TC12011 similar to UP|SY71_ARATH (Q9SF29) Syntaxin 71 (AtSYP71), partial
           (44%)
          Length = 541

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 212 ERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLLQKFDKLTV 254
           E  I  +TPPP       + +S +D L T+VDT+  K+DK  V
Sbjct: 89  ENKIPLLTPPP-------HTMSVID-LLTRVDTICNKYDKYDV 193


>TC9924 UP|RBL_LOTJA (Q9BBU1) Ribulose bisphosphate carboxylase large chain
            precursor  (RuBisCO large subunit) , complete
          Length = 1592

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
 Frame = -1

Query: 339  GSLNDSFVKLTSKVDSI--AIHTRMLETQISQ----VAQKVATSSPT 379
            G L D+F+ LTSK+ S+  +++TR     IS     ++ +V+ SS T
Sbjct: 1511 GRLTDNFITLTSKITSLVSSLYTRFKSYSISNSTRCISPRVS*SSST 1371


>TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13.21
           protein), partial (26%)
          Length = 744

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 15/38 (39%), Positives = 21/38 (54%)
 Frame = +3

Query: 80  LFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFP 117
           LF   L + ASAW  SL  GS+ S+ ++ +  L   FP
Sbjct: 627 LFVVKLSE*ASAWAFSLGNGSVNSFWKLLQFLLIDVFP 740


>TC17075 similar to UP|Q7Y0H8 (Q7Y0H8) Cinnamoyl CoA reductase, partial (7%)
          Length = 534

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 441 PPYKLKIHVPQRLAKPNFIVIESFS 465
           PPY  +I + QRL  PN I+I  FS
Sbjct: 530 PPYIKEITIRQRLFLPNSIIIVIFS 456


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,348,390
Number of Sequences: 28460
Number of extensions: 109240
Number of successful extensions: 537
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of query: 500
length of database: 4,897,600
effective HSP length: 94
effective length of query: 406
effective length of database: 2,222,360
effective search space: 902278160
effective search space used: 902278160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)