TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139747.1 - phase: 0 /pseudo
         (441 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP054819                                                              117  5e-27
BP041998                                                               87  1e-25
AV781229                                                               49  2e-06
TC17578                                                                32  0.27
TC9039                                                                 30  1.0
TC8072                                                                 28  2.3
TC13053 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti...    27  5.1
TC20129 homologue to GB|AAF04891.1|6175165|ATAC011437 Mutator-li...    27  5.1
BP049972                                                               27  5.1
CB828195                                                               27  6.7

>BP054819 
          Length = 537

 Score =  117 bits (292), Expect = 5e-27
 Identities = 56/91 (61%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
 Frame = -3

Query: 4   DKEGGFVNTPPLLDGLNYDYWKSRMSVFLKFVDNKT*IAVLRGWEHPVTLYADGNMTNVL 63
           +KEGG VN PP+LDG NYDY K RM+ FLK +DNKT  A+++GW+HP  +  +G  T V+
Sbjct: 307 NKEGG*VNRPPILDGTNYDY*KVRMTAFLKSIDNKTWKAIVKGWKHPTKVEVEGTSTTVV 128

Query: 64  -KP*EEWTAAEDELALGNSKALNALFNVVDK 93
            KP EEWT+ EDE ALGNSKALNA+FN VD+
Sbjct: 127 EKPEEEWTSVEDEAALGNSKALNAIFNGVDR 35


>BP041998 
          Length = 485

 Score = 87.0 bits (214), Expect(2) = 1e-25
 Identities = 43/72 (59%), Positives = 53/72 (72%), Gaps = 1/72 (1%)
 Frame = -3

Query: 29  SVFLKFVDNKT*IAVLRGWEHPVTLYADGNMTNVL-KP*EEWTAAEDELALGNSKALNAL 87
           +VFLK +DNKT  A++ GW+HP     +G  T V+ KP EEWT+ EDE ALGNSKALNA+
Sbjct: 246 TVFLKSIDNKTWKAIVNGWKHPTKSQVEGTSTTVVEKPEEEWTSVEDEAALGNSKALNAI 67

Query: 88  FNVVDKNMFKLI 99
           F  VD NMF+LI
Sbjct: 66  FYGVDXNMFRLI 31



 Score = 46.2 bits (108), Expect(2) = 1e-25
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -2

Query: 4   DKEGGFVNTPPLLDGLNYDYWKSRMSV 30
           +KEGG VN PP+LDG NYDYWK R S+
Sbjct: 319 NKEGGSVNRPPILDGTNYDYWKVRDSL 239


>AV781229 
          Length = 208

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 21/31 (67%), Positives = 25/31 (79%)
 Frame = +3

Query: 300 KGVQCHECEGYGHIKIECASFLKK*KKSLTV 330
           KGV CHE EGYGHI+ ECA++LKK KK + V
Sbjct: 114 KGV*CHEWEGYGHIRSECATYLKKQKKGMVV 206


>TC17578 
          Length = 512

 Score = 31.6 bits (70), Expect = 0.27
 Identities = 16/48 (33%), Positives = 25/48 (51%)
 Frame = -2

Query: 294 EKNFQYKGVQCHECEGYGHIKIECASFLKK*KKSLTVSWSDDDGSKGD 341
           E  F    +  ++C G  H  I+ +S  +K KK+L   W   DG++GD
Sbjct: 283 EYEFFLHSIWSNQCIGRQHNLIKVSSSKRKKKKNLAYIWQWRDGTRGD 140


>TC9039 
          Length = 1218

 Score = 29.6 bits (65), Expect = 1.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 10  VNTPPLLDGLNYDYWKSRMSVFLKFVD 36
           +N+ P+LDG N+  WK  M + L  +D
Sbjct: 142 LNSVPILDGTNFKDWKENMEIVLGCMD 222


>TC8072 
          Length = 723

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 367 DLAYDELVVSYKRLNDKNTDICKQLEEQKNI-TNNLEEERVGYLEKNSELNSEVRMLNSQ 425
           D  +D L +    L D+N  + +Q E++KN+   +++   +G  E   E  S +  +N +
Sbjct: 590 DKYHDNLPIKTIHLIDRNMVLPRQKEKEKNVLVLHIDFTHLGMKEAAKETTSLINSMNEK 411

Query: 426 LSNV 429
           + N+
Sbjct: 410 MVNL 399


>TC13053 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (9%)
          Length = 450

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 304 CHECEGYGHIKIECAS 319
           CH C G GH+  EC S
Sbjct: 69  CHNCGGRGHLAYECPS 116


>TC20129 homologue to GB|AAF04891.1|6175165|ATAC011437 Mutator-like
           transposase {Arabidopsis thaliana;} , partial (12%)
          Length = 588

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 286 KEKMVRTDEKNFQYKGVQCHECEGYGHIKIECAS 319
           ++K VR +++    + V C  C   GH +  CA+
Sbjct: 171 RKKRVRAEDRGRVKRVVHCSRCNQTGHFRTTCAA 272


>BP049972 
          Length = 496

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 286 KEKMVRTDEKNFQYKGVQCHECEGYGHIKIECAS 319
           ++K VR +++    + V C  C   GH +  CA+
Sbjct: 289 RKKRVRAEDRGRVKRVVHCSRCNQTGHFRTTCAA 188


>CB828195 
          Length = 551

 Score = 26.9 bits (58), Expect = 6.7
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
 Frame = +3

Query: 335 DDGSKGDG-ERESIKHVAALIGRVFSDAESCSEDLAYDELVVSYKRLNDKNTDICKQLEE 393
           ++ SK +G +R+ +K V A +G        CS++    E     K L++   D    LEE
Sbjct: 246 ENESKSEGIQRDEVKKVMAELGFF------CSKESEELEEKYGSKELSELFEDQEPSLEE 407

Query: 394 QKNITNNLEEERVGYLEKNSELNSEVRMLNSQLSNVMKQVKMMAARTD 441
            K   +  +E R G+++   EL+  + +L  +    +++ K+M    D
Sbjct: 408 VKQAFDVFDENRDGFIDAR-ELHRVLCVLGLKEEAGIEKCKIMIRNFD 548


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,691,021
Number of Sequences: 28460
Number of extensions: 62926
Number of successful extensions: 283
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of query: 441
length of database: 4,897,600
effective HSP length: 93
effective length of query: 348
effective length of database: 2,250,820
effective search space: 783285360
effective search space used: 783285360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)