BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139745.7 + phase: 0
(240 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP036382 69 9e-13
TC9193 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P... 63 4e-11
TC9411 similar to UP|Q41102 (Q41102) Phaseolin G-box binding pro... 61 1e-10
TC18919 similar to GB|AAN73298.1|25141207|BT002301 At4g16430/dl4... 59 1e-09
TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium t... 56 6e-09
CB827320 55 1e-08
CB828026 54 2e-08
TC16664 similar to UP|BAD09830 (BAD09830) DNA-binding protein-li... 54 2e-08
AW428702 50 3e-07
TC18748 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10... 50 3e-07
BP036451 50 4e-07
TC17162 similar to UP|Q8H5F1 (Q8H5F1) OJ1165_F02.16 protein, par... 45 1e-05
TC15321 similar to UP|BAD09664 (BAD09664) BHLH protein family-li... 44 3e-05
TC17246 similar to UP|Q8S490 (Q8S490) Transcription factor RAU1 ... 44 3e-05
TC16132 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10... 43 5e-05
AV772495 40 4e-04
TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1 (AT3g1... 37 0.002
AV424133 35 0.011
TC12218 30 0.48
TC18995 weakly similar to UP|Q8PB28 (Q8PB28) Serine protease, pa... 30 0.48
>BP036382
Length = 511
Score = 68.6 bits (166), Expect = 9e-13
Identities = 30/51 (58%), Positives = 45/51 (87%)
Frame = +3
Query: 166 HNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
H+++ER RR++I E+++AL+EL+PN NK DKASMLD+ IDY+K L+LQ++V
Sbjct: 135 HSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 287
>TC9193 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P11_13
{Arabidopsis thaliana;}, partial (59%)
Length = 1474
Score = 63.2 bits (152), Expect = 4e-11
Identities = 27/51 (52%), Positives = 44/51 (85%)
Frame = +1
Query: 166 HNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
H+++ER RR++I E+IRA +EL+P+ NK D+A+MLD+ +DY+K L+LQ++V
Sbjct: 466 HSIAERLRRERIAERIRA*QELVPSVNKTDRAAMLDEIVDYVKFLRLQVKV 618
>TC9411 similar to UP|Q41102 (Q41102) Phaseolin G-box binding protein PG2
(Fragment), partial (30%)
Length = 705
Score = 61.2 bits (147), Expect = 1e-10
Identities = 28/70 (40%), Positives = 46/70 (65%)
Frame = +2
Query: 146 KEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAID 205
+++P + G + H +ER+RR+K+N++ AL+ ++PN +KMDKAS+L DAI
Sbjct: 131 EKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIS 310
Query: 206 YLKTLKLQLQ 215
Y+ LK +LQ
Sbjct: 311 YITELKTKLQ 340
>TC18919 similar to GB|AAN73298.1|25141207|BT002301 At4g16430/dl4240w
{Arabidopsis thaliana;}, partial (29%)
Length = 604
Score = 58.5 bits (140), Expect = 1e-09
Identities = 26/81 (32%), Positives = 51/81 (62%)
Frame = +3
Query: 136 NDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMD 195
N++ + ++ KP + G + H +ER+RR+K+N++ AL+ ++PN +KMD
Sbjct: 324 NEDASSPHLDDRKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMD 503
Query: 196 KASMLDDAIDYLKTLKLQLQV 216
KAS+L DAI ++ L+ ++++
Sbjct: 504 KASLLGDAITHITDLQKKIKL 566
>TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium
transporter, partial (34%)
Length = 1007
Score = 55.8 bits (133), Expect = 6e-09
Identities = 26/51 (50%), Positives = 39/51 (75%)
Frame = +1
Query: 166 HNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
H ++ER+RR+K+++ + AL LIP KMDKAS+L DAI Y+K LK +L++
Sbjct: 31 HIIAERRRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKVLKERLRL 183
>CB827320
Length = 522
Score = 55.1 bits (131), Expect = 1e-08
Identities = 24/49 (48%), Positives = 39/49 (78%)
Frame = +1
Query: 168 LSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
+SER RR K+NE++ AL+ ++PN +KMDKAS++ DAI+Y++ L Q ++
Sbjct: 238 VSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIEHLHEQEKI 384
>CB828026
Length = 542
Score = 54.3 bits (129), Expect = 2e-08
Identities = 28/69 (40%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Frame = +2
Query: 166 HNLSERKRRDKINEKIRALKELIPNCNKM-DKASMLDDAIDYLKTLKLQLQVKFYVLQFS 224
H+L+ER RR+KI+E+++ L++L+P C+K+ KA MLD+ I+Y+++ LQ QV+F ++ +
Sbjct: 149 HSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQS--LQRQVEFLSMKLA 322
Query: 225 VTLFKLRFH 233
+L F+
Sbjct: 323 TVNPRLDFN 349
>TC16664 similar to UP|BAD09830 (BAD09830) DNA-binding protein-like, partial
(22%)
Length = 1067
Score = 53.9 bits (128), Expect = 2e-08
Identities = 27/61 (44%), Positives = 40/61 (65%)
Frame = +1
Query: 151 REGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTL 210
R+G +RS + H+ +ER+RR +IN + L+ +IP NKMDKAS+L + I +LK L
Sbjct: 247 RKGVSPERSIEALRNHSEAERRRRARINAHLDTLRTVIPGANKMDKASLLAEVITHLKEL 426
Query: 211 K 211
K
Sbjct: 427 K 429
>AW428702
Length = 387
Score = 50.4 bits (119), Expect = 3e-07
Identities = 27/69 (39%), Positives = 49/69 (70%), Gaps = 1/69 (1%)
Frame = +3
Query: 172 KRRDKINEKIRALKELIPNCNKM-DKASMLDDAIDYLKTLKLQLQVKFYVLQFSVTLFKL 230
+RR+KI+E+++ L++L+P CNK+ KA MLD+ I+Y+++ LQ QV+F ++ + +L
Sbjct: 12 ERREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQS--LQRQVEFLSMKLAAVNPRL 185
Query: 231 RFHYIILFL 239
F+ LF+
Sbjct: 186 DFNIDELFV 212
>TC18748 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P11_13
{Arabidopsis thaliana;}, partial (36%)
Length = 803
Score = 50.1 bits (118), Expect = 3e-07
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +1
Query: 149 PVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLD 201
P+R R +R + H+++ER RR++I E+IRAL+EL+P+ NK D+A MLD
Sbjct: 448 PMRPRVRARRG-QATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAVMLD 603
>BP036451
Length = 511
Score = 49.7 bits (117), Expect = 4e-07
Identities = 23/57 (40%), Positives = 39/57 (68%)
Frame = +2
Query: 154 NRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTL 210
NRV S + +E++RR+++N K + L+ LIP+ K+D+AS++ DAIDY++ L
Sbjct: 287 NRVTASVGKGREGKGTEKERREQLNGKYKILRSLIPSPTKIDRASVVGDAIDYIREL 457
>TC17162 similar to UP|Q8H5F1 (Q8H5F1) OJ1165_F02.16 protein, partial (40%)
Length = 784
Score = 44.7 bits (104), Expect = 1e-05
Identities = 19/61 (31%), Positives = 36/61 (58%)
Frame = +3
Query: 155 RVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQL 214
+VKR+ + + RKR + +K R L L+P C K+ ++L++A DY+ L++Q+
Sbjct: 381 KVKRAASGLRRAAIGRRKRLPAVQKKARVLGRLVPGCRKVSFPNLLEEATDYISALEMQV 560
Query: 215 Q 215
+
Sbjct: 561 R 563
>TC15321 similar to UP|BAD09664 (BAD09664) BHLH protein family-like, partial
(23%)
Length = 1593
Score = 43.5 bits (101), Expect = 3e-05
Identities = 20/51 (39%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = +2
Query: 166 HNLSERKRRDKINEKIRALKELIPNC-NKMDKASMLDDAIDYLKTLKLQLQ 215
H+++E++RR KINE+ + L+++IP+ K D AS L + I+Y++ L+ ++Q
Sbjct: 392 HSVTEQRRRSKINERFQILRDIIPHSEQKRDTASFLLEVIEYVQYLQEKVQ 544
>TC17246 similar to UP|Q8S490 (Q8S490) Transcription factor RAU1 (Fragment),
partial (39%)
Length = 606
Score = 43.5 bits (101), Expect = 3e-05
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Frame = +2
Query: 158 RSYRNAKVH--NLSERKRRDKINEKIRALKELIPNCNK-MDKASMLDDAIDYLKTL 210
R+ R H +L+ER RR KI+E++R L +L+PN ++ + A MLD A+DY++ L
Sbjct: 5 RAQRGFATHPRSLAERVRRTKISERMRKLPDLVPNMDQPTNPADMLDLAVDYIQDL 172
>TC16132 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P11_13
{Arabidopsis thaliana;}, partial (32%)
Length = 802
Score = 42.7 bits (99), Expect = 5e-05
Identities = 17/31 (54%), Positives = 27/31 (86%)
Frame = +1
Query: 186 ELIPNCNKMDKASMLDDAIDYLKTLKLQLQV 216
EL+P+ NK D+A+MLD+ +DY+K L+LQ++V
Sbjct: 1 ELVPSINKSDRAAMLDEIVDYVKFLRLQVKV 93
>AV772495
Length = 572
Score = 40.0 bits (92), Expect = 4e-04
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = -3
Query: 129 DSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELI 188
D Y D D + ++ VR G H+L+ER RR+KIN +++ L+EL+
Sbjct: 513 DDRYGGDGDGDGEKLPYVHVRVRRGQATDS-------HSLAERARREKINARMKLLQELV 355
Query: 189 PNCNKM 194
P C K+
Sbjct: 354 PGCYKL 337
>TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1
(AT3g17100/K14A17_22_), partial (43%)
Length = 1108
Score = 37.4 bits (85), Expect = 0.002
Identities = 18/78 (23%), Positives = 41/78 (52%)
Frame = +3
Query: 138 EETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKA 197
++ ++ ++++KP G K + ++ K + K+R L L+P C K
Sbjct: 654 QQQRKRLLQQKPAGPGRSKKARFSVLRLKG----KTLPAVQRKVRFLGRLVPGCWKEPLP 821
Query: 198 SMLDDAIDYLKTLKLQLQ 215
++++AIDY+ L++Q++
Sbjct: 822 VIVEEAIDYIPALEMQVR 875
>AV424133
Length = 307
Score = 35.0 bits (79), Expect = 0.011
Identities = 15/38 (39%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Frame = +3
Query: 179 EKIRALKELIPNCNKM-DKASMLDDAIDYLKTLKLQLQ 215
E+++ L+ L+P C+K+ KA MLD+ I+Y+++L+ Q++
Sbjct: 3 ERMKRLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVE 116
>TC12218
Length = 737
Score = 29.6 bits (65), Expect = 0.48
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 170 ERKRRDKINEKIRALKELIP--NCNKMDKASMLDDAIDYLKTLK 211
E+ RRDK+NE+ L ++ K DKA+++ DA+ + L+
Sbjct: 290 EKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLR 421
>TC18995 weakly similar to UP|Q8PB28 (Q8PB28) Serine protease, partial (4%)
Length = 473
Score = 29.6 bits (65), Expect = 0.48
Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Frame = +1
Query: 69 PTVDEHSEAAASHTNAPRIRGKRKASAINLCNAQKPSSVCSLEASNDLNFGVRKSHED-- 126
PT ++S+ ++S I+ +RK AI+LC + PSS ++N +S+ +
Sbjct: 1 PTRPKNSDRSSSFI----IKKERKKEAISLCVLRLPSSSSPSLHFREMNSNYGRSNSNPQ 168
Query: 127 --TDDSPYLSDND----------EETQENIVKEKPVREGNRVKRSYRNAKVHNLSERKRR 174
SPY+S N+ ++++ +K + SY + ++ ++ K+
Sbjct: 169 KTASSSPYVSLNNFNFDFDLGIGSNRPKSLIDQKTPTSNSNSNPSYSYSNPNSSTQSKKP 348
Query: 175 DKINEKIRALKELIP 189
++ + A +P
Sbjct: 349 SWTHQPVPAQTAALP 393
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.130 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,532,542
Number of Sequences: 28460
Number of extensions: 40329
Number of successful extensions: 301
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of query: 240
length of database: 4,897,600
effective HSP length: 88
effective length of query: 152
effective length of database: 2,393,120
effective search space: 363754240
effective search space used: 363754240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC139745.7