BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139745.5 + phase: 0 /pseudo
(2129 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG662087 136 4e-32
BI417841 74 2e-13
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 63 6e-10
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ... 61 2e-09
TC18698 57 2e-08
AV427422 55 1e-07
AV410603 53 6e-07
BF177840 48 1e-05
>BG662087
Length = 373
Score = 136 bits (342), Expect = 4e-32
Identities = 64/119 (53%), Positives = 85/119 (70%)
Frame = +1
Query: 1138 GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 1197
GK RM VD+ DLNKA PKD++PLP ID LVD + +++ S MD +SGY+QIKM P D +K
Sbjct: 16 GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195
Query: 1198 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQH 1256
T+F+T +CY+ +PFGL NAGATYQ M +F D + + +EVY+D+MIVKS H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>BI417841
Length = 617
Score = 73.9 bits (180), Expect = 2e-13
Identities = 42/136 (30%), Positives = 67/136 (48%), Gaps = 2/136 (1%)
Frame = +1
Query: 1545 NSKWGLVFDGAV--NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEA 1602
N L FDG+ N G GAV+ + G + + + TNN AEY I G++ A
Sbjct: 127 NRSCTLEFDGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLILGLKHA 303
Query: 1603 IDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQ 1662
+ +H+++ GDS LV Q++G W+ + N+ + A+ L + F +++H+PR N
Sbjct: 304 HEQGYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNS 483
Query: 1663 MADALATLSSMFRVNH 1678
AD A L H
Sbjct: 484 EADVQANLGVNLPAGH 531
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 62.8 bits (151), Expect = 6e-10
Identities = 36/96 (37%), Positives = 49/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 1912 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-KRIVQKMVTTYKDWHE 1970
+NG + Q C+ I+ SS PQ NG EAANK I K I +++ W +
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187
Query: 1971 MLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2006
LP L Y T +SS TPF L YG + +LP+E+
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEI 295
>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
Length = 632
Score = 60.8 bits (146), Expect = 2e-09
Identities = 30/91 (32%), Positives = 45/91 (48%)
Frame = +2
Query: 1592 YEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKV 1651
Y I G++ AI KH+ + GDS LV NQ++G W+ + N+ A+ L F
Sbjct: 2 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181
Query: 1652 ELHHIPRDENQMADALATLSSMFRVNHWNDV 1682
+++HIPR+ N AD A R +V
Sbjct: 182 KINHIPREYNSEADVQANFGISLRAGQVEEV 274
>TC18698
Length = 808
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = -2
Query: 1195 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEE 1254
++KT+ + Y+VMP GL N TYQR M +FH I K VEVYV+DMIVKS+ E
Sbjct: 807 KKKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE* 628
Query: 1255 QH 1256
H
Sbjct: 627 FH 622
>AV427422
Length = 417
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/133 (24%), Positives = 63/133 (46%), Gaps = 2/133 (1%)
Frame = +1
Query: 1861 SNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNN 1919
S G+ +LV +D +K+ + T +V+A ++ +GVP I++D +
Sbjct: 19 SKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMS 198
Query: 1920 NVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHG 1978
N + L + + S+ Y P+ +G E N+ ++ ++ + K W +P+A +
Sbjct: 199 NFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYW 378
Query: 1979 YRTTVRSSTGATP 1991
Y T+ STG TP
Sbjct: 379 YNTSYHVSTGQTP 417
>AV410603
Length = 162
Score = 52.8 bits (125), Expect = 6e-07
Identities = 26/51 (50%), Positives = 34/51 (65%)
Frame = +1
Query: 1155 KDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWG 1205
KD+FP+P +D L+D S+ FS +D SGY+QI + PEDR KT F T G
Sbjct: 10 KDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>BF177840
Length = 410
Score = 48.1 bits (113), Expect = 1e-05
Identities = 26/101 (25%), Positives = 49/101 (47%), Gaps = 1/101 (0%)
Frame = +2
Query: 1907 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVT-TY 1965
+ I++D T ++ + L + + S+ PQ +G E NK + +++ ++
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 1966 KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2006
K W LP+ Y V S+T +PF +VYG + PL++
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.340 0.149 0.494
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,654,073
Number of Sequences: 28460
Number of extensions: 578043
Number of successful extensions: 4499
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4496
length of query: 2129
length of database: 4,897,600
effective HSP length: 104
effective length of query: 2025
effective length of database: 1,937,760
effective search space: 3923964000
effective search space used: 3923964000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC139745.5