BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139744.2 - phase: 0 /pseudo
(1366 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14737 similar to UP|Q9LEB3 (Q9LEB3) RNA binding protein 47, pa... 50 3e-06
AV779571 47 3e-05
TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fra... 46 3e-05
AW720417 44 2e-04
AV408212 42 5e-04
AV422734 42 7e-04
AV418552 40 0.002
BF177814 39 0.006
TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pro... 39 0.006
TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, part... 39 0.007
TC16093 weakly similar to UP|PF21_ARATH (Q04088) Possible transc... 37 0.021
TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial ... 36 0.047
AW719943 36 0.047
AV415922 35 0.062
TC9649 similar to UP|Q95TP4 (Q95TP4) LD33277p, partial (4%) 35 0.062
CB826726 35 0.11
TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structura... 35 0.11
BP029370 34 0.14
TC9032 similar to GB|AAP21369.1|30102902|BT006561 At4g19200 {Ara... 34 0.14
CB828017 34 0.14
>TC14737 similar to UP|Q9LEB3 (Q9LEB3) RNA binding protein 47, partial (32%)
Length = 803
Score = 49.7 bits (117), Expect = 3e-06
Identities = 34/99 (34%), Positives = 43/99 (43%)
Frame = +3
Query: 398 GAAGMGHARPPQAQPQQPPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQ 457
G+A + PPQ Q QP + QQQ +QY + + + +QQM + HY
Sbjct: 141 GSADLNQNAPPQQQ--QPQQWAAQQQQWMAMQYPATAMAMM----QQQMMMYPQHYMPYV 302
Query: 458 QHQQQLRMQQQQQQQLHAGVSPVQQPGQVARPPQQSLQQ 496
H Q QQQQ AG P QQ Q QQ QQ
Sbjct: 303 HHHYQPHHQQQQAAAAAAGAVPQQQHQQHHHQQQQKQQQ 419
>AV779571
Length = 538
Score = 46.6 bits (109), Expect = 3e-05
Identities = 39/98 (39%), Positives = 47/98 (47%)
Frame = +1
Query: 409 QAQPQQPPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQQQLRMQQQ 468
Q+QPQQ + NQ+ QLLQ QSH++ Q Q Q+H QQ QQQ QQQ
Sbjct: 133 QSQPQQV--FQNNQENQQLLQS-QSHLQQHLQHQHSFNGQTQNHNHNQQQQQQQ---QQQ 294
Query: 469 QQQQLHAGVSPVQQPGQVARPPQQSLQQPSVKSCPPQA 506
QQQ V QQ G Q + P +S P QA
Sbjct: 295 TQQQ----VVDNQQIGNAGSTMSQFVSAPQPQSSPTQA 396
>TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fragment),
partial (6%)
Length = 806
Score = 46.2 bits (108), Expect = 3e-05
Identities = 36/93 (38%), Positives = 43/93 (45%), Gaps = 2/93 (2%)
Frame = +2
Query: 406 RPPQ-AQPQQPPPYYLNQ-QQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQQQL 463
+PPQ Q QQ L Q QQ QL Q Q + L QQ Q+Q Q +L Q QQL
Sbjct: 44 QPPQLTQLQQQQQQQLPQVQQQQLSQMQQQQLPQLQQQQLSQLQPQQQLPQLQQLQHQQL 223
Query: 464 RMQQQQQQQLHAGVSPVQQPGQVARPPQQSLQQ 496
QQQQ G + VQ PG+ Q + Q
Sbjct: 224 PQQQQQMVGAGMGQAYVQGPGRSQMVSQGQVSQ 322
Score = 39.3 bits (90), Expect = 0.004
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +2
Query: 444 QQMQQFQHHYRLMQQHQQQLRMQQQQQQQLHAGVSPVQQPGQVARPPQQ---SLQQPSVK 500
QQ+ Q Q +L QQ Q ++QQQQQQQL P Q Q+++ QQ LQQ +
Sbjct: 2 QQLPQLQQQQQLQQQPPQLTQLQQQQQQQL-----PQVQQQQLSQMQQQQLPQLQQQQLS 166
Query: 501 SCPPQ 505
PQ
Sbjct: 167 QLQPQ 181
Score = 38.1 bits (87), Expect = 0.010
Identities = 35/89 (39%), Positives = 42/89 (46%)
Frame = +2
Query: 408 PQAQPQQPPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQQQLRMQQ 467
PQ Q QQ L QQ QL Q Q + L Q+QQ+ Q MQQ QQ ++QQ
Sbjct: 11 PQLQQQQQ----LQQQPPQLTQLQQQQQQQLPQVQQQQLSQ-------MQQ-QQLPQLQQ 154
Query: 468 QQQQQLHAGVSPVQQPGQVARPPQQSLQQ 496
QQ QL P QQ Q+ + Q L Q
Sbjct: 155 QQLSQL----QPQQQLPQLQQLQHQQLPQ 229
Score = 33.9 bits (76), Expect = 0.18
Identities = 27/65 (41%), Positives = 36/65 (54%)
Frame = +2
Query: 441 QQRQQMQQFQHHYRLMQQHQQQLRMQQQQQQQLHAGVSPVQQPGQVARPPQQSLQQPSVK 500
QQ+QQ+QQ +QQ QQQ ++ Q QQQQL S +QQ Q+ + QQ L Q +
Sbjct: 20 QQQQQLQQQPPQLTQLQQQQQQ-QLPQVQQQQL----SQMQQQ-QLPQLQQQQLSQLQPQ 181
Query: 501 SCPPQ 505
PQ
Sbjct: 182 QQLPQ 196
>AW720417
Length = 554
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/59 (42%), Positives = 32/59 (53%)
Frame = +3
Query: 414 QPPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQQQLRMQQQQQQQ 472
QP P+ QQQ Q +Q + + QQ+ Q Q Q+H QQHQ + QQQQQQQ
Sbjct: 18 QPRPHQQQQQQHQYVQRHMMPNQQQYHQQQHQQNQPQYH----QQHQHNQQQQQQQQQQ 182
>AV408212
Length = 362
Score = 42.4 bits (98), Expect = 5e-04
Identities = 24/64 (37%), Positives = 31/64 (47%)
Frame = +3
Query: 411 QPQQPPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQQQLRMQQQQQ 470
QPQQ P QQQ +Q + QQ+QQ QQ Q + Q QQQ + QQQ +
Sbjct: 3 QPQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQSQQQQPQSQQQSR 182
Query: 471 QQLH 474
+ H
Sbjct: 183 DRAH 194
Score = 36.6 bits (83), Expect = 0.028
Identities = 20/55 (36%), Positives = 27/55 (48%)
Frame = +3
Query: 439 NPQQRQQMQQFQHHYRLMQQHQQQLRMQQQQQQQLHAGVSPVQQPGQVARPPQQS 493
+P Q+QQ QQ +++ Q L+ QQQQQQQ Q Q + QQS
Sbjct: 15 SPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQSQQQQPQSQQQS 179
Score = 35.4 bits (80), Expect = 0.062
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +3
Query: 440 PQQR-QQMQQFQHHYR----LMQQH---QQQLRMQQQQQQQLHAGVSPVQQP 483
PQQ Q QQ Q H + L+Q+H QQQ + QQQQQQQ S QQP
Sbjct: 6 PQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQSQQQQP 161
>AV422734
Length = 448
Score = 42.0 bits (97), Expect = 7e-04
Identities = 19/28 (67%), Positives = 21/28 (74%)
Frame = +1
Query: 447 QQFQHHYRLMQQHQQQLRMQQQQQQQLH 474
QQ QH + QQHQQQL +QQQQQQQ H
Sbjct: 94 QQHQHQQQQHQQHQQQLMLQQQQQQQQH 177
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +1
Query: 420 LNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQQQLRMQQQQQQQLHA 475
L+QQ Q +Q H + L QQ+QQ QQ H+ L+Q QL+ QQQQQQQ A
Sbjct: 88 LHQQHQHQQQQHQQHQQQLMLQQQQQQQQ---HFLLLQ----QLQKQQQQQQQAAA 234
Score = 33.1 bits (74), Expect = 0.31
Identities = 28/97 (28%), Positives = 40/97 (40%), Gaps = 26/97 (26%)
Frame = +1
Query: 411 QPQQPPPYYLNQQQLQLLQYYQ--------------SHVESLNPQQRQQ----------- 445
Q QQ ++L QQLQ Q Q +H+ + P QQ
Sbjct: 154 QQQQQQQHFLLLQQLQKQQQQQQQAAAISRFPSSIDAHLRPIRPINLQQNPNPNPNNPIL 333
Query: 446 -MQQFQHHYRLMQQHQQQLRMQQQQQQQLHAGVSPVQ 481
+ Q + L QQ QQQ QQQQQQ++ +P++
Sbjct: 334 NLHQNPNSNHLQQQQQQQQPQQQQQQQKMVRPGNPME 444
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/57 (36%), Positives = 26/57 (44%), Gaps = 4/57 (7%)
Frame = +1
Query: 455 LMQQHQQQLRMQQQQQQQLHAGVSPVQQPG----QVARPPQQSLQQPSVKSCPPQAV 507
L QQHQ Q + QQ QQQL QQ Q + QQ QQ + S P ++
Sbjct: 88 LHQQHQHQQQQHQQHQQQLMLQQQQQQQQHFLLLQQLQKQQQQQQQAAAISRFPSSI 258
>AV418552
Length = 386
Score = 40.4 bits (93), Expect = 0.002
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Frame = +2
Query: 408 PQAQPQQPPPYYLNQQQLQLLQYYQ------SHVESLNPQQRQQMQQFQHHYRLMQ---- 457
P +Q QQ L QQ Q+L Y+Q H++ Q+QQ+ Q Q +Q
Sbjct: 44 PSSQEQQ-----LMQQHQQMLSYFQPQQQLLPHLQLQQQLQQQQLAQLQQQLSQLQLTLL 208
Query: 458 QHQQQLRMQQQQQQQLHAGVSPVQ----QPGQVARP--PQQSLQQ 496
Q QQ ++QQQQ QL ++ +Q Q Q+ + PQQ QQ
Sbjct: 209 QQQQLTQLQQQQLAQLQQQLAQLQLTQHQHTQLQQQLLPQQQFQQ 343
Score = 33.5 bits (75), Expect = 0.23
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Frame = +2
Query: 427 LLQYYQSHVESLNPQQRQQM-------QQFQHHYRLMQQ-HQQQLRMQQQQQQQLHAGVS 478
L + S E QQ QQM QQ H +L QQ QQQL QQQ QL +
Sbjct: 29 LAAFEPSSQEQQLMQQHQQMLSYFQPQQQLLPHLQLQQQLQQQQLAQLQQQLSQLQLTLL 208
Query: 479 PVQQPGQVARPPQQSLQQ 496
QQ Q+ + LQQ
Sbjct: 209 QQQQLTQLQQQQLAQLQQ 262
>BF177814
Length = 453
Score = 38.9 bits (89), Expect = 0.006
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = -1
Query: 412 PQQPPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQQQLRMQQQQQQ 471
P PPP+ L+ QLQL Q++ H+ QQ QQ QHH H+++LR+ ++
Sbjct: 264 PPSPPPFPLSSIQLQLEQHHHRHL------PEQQTQQRQHH------HRKELRITSPYRR 121
Query: 472 Q 472
Q
Sbjct: 120 Q 118
>TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (33%)
Length = 1002
Score = 38.9 bits (89), Expect = 0.006
Identities = 39/137 (28%), Positives = 55/137 (39%), Gaps = 31/137 (22%)
Frame = +1
Query: 406 RPPQAQPQQPPP----------YYLNQQQLQ-----LLQYYQSHVESLNPQQRQQMQQFQ 450
+P AQPQ P P YY+ L + Q Q+ + L P Q+ + Q Q
Sbjct: 598 QPAAAQPQAPAPNVTQAPQQPAYYIPSTPLPGNTQTVAQLPQN--QYLPPDQQYRTPQMQ 771
Query: 451 HHYRL----------------MQQHQQQLRMQQQQQQQLHAGVSPVQQPGQVARPPQQSL 494
R+ +QQ+ Q + QQQQQQQ P Q P QV S+
Sbjct: 772 DMSRVAPQPCTNXSGXSPPPPVQQYPQYQQPQQQQQQQQQQQQWPQQLPQQVQPTQPPSM 951
Query: 495 QQPSVKSCPPQAVHIPF 511
Q P ++ P V+ P+
Sbjct: 952 QSPQIRP-PSSPVYPPY 999
Score = 32.3 bits (72), Expect = 0.52
Identities = 47/187 (25%), Positives = 63/187 (33%), Gaps = 4/187 (2%)
Frame = +1
Query: 310 PSITSKAELPTIEEAWNTPVVSDWNSKHQPQQKRHPGMAQQGGPKPNHYVNGVNGGA--V 367
PS T + +A N + ++ PQ + P AQ P PN A +
Sbjct: 502 PSTTDSKKADNASDASNQQLALALPNQIAPQPQ--PAAAQPQAPAPN-VTQAPQQPAYYI 672
Query: 368 PPPPYPGAVPGAG--PNAKRFKPNGEVDNGMVGAAGMGHARPPQAQPQQPPPYYLNQQQL 425
P P PG P + P+ + + +P PP + Q
Sbjct: 673 PSTPLPGNTQTVAQLPQNQYLPPDQQYRTPQMQDMSRVAPQPCTNXSGXSPPPPVQQYP- 849
Query: 426 QLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQQQLRMQQQQQQQLHAGVSPVQQPGQ 485
QY Q PQQ+QQ QQ Q QQ QQL Q Q Q ++ P
Sbjct: 850 ---QYQQ-------PQQQQQQQQQQ------QQWPQQLPQQVQPTQPPSMQSPQIRPPSS 981
Query: 486 VARPPQQ 492
PP Q
Sbjct: 982 PVYPPYQ 1002
>TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, partial (4%)
Length = 622
Score = 38.5 bits (88), Expect = 0.007
Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Frame = +3
Query: 439 NPQQRQQMQQFQHHYRLMQQHQQQLRMQQQQQQQLHAGVSPVQQPGQVARPPQQ-----S 493
N Q QQ QH QQHQ Q + QQQ Q H P G PPQQ
Sbjct: 99 NDPHNPQHQQHQH-----QQHQHQFQQQQQPQHFHHQQPGPEFHRGPPPPPPQQPHPPPM 263
Query: 494 LQQPSVKS--CPPQAVHIPFSFLSTPFFDMTTD 524
++QPS S P+ H P +D+ +D
Sbjct: 264 MRQPSASSTNLAPEFHHPGPGGPPPPHYDVHSD 362
Score = 27.3 bits (59), Expect(2) = 1.1
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Frame = +3
Query: 327 TPVVSDWNSKHQP-------QQKRHPGMAQQGGPKPNHYVNGVNGGAVPPPPYP 373
TP+ +N H P QQ +H QQ +H G PPPP P
Sbjct: 78 TPIAMMYNDPHNPQHQQHQHQQHQHQFQQQQQPQHFHHQQPGPEFHRGPPPPPP 239
Score = 22.3 bits (46), Expect(2) = 1.1
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +3
Query: 404 HARPPQAQPQQP-PPYYLNQ---QQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQH 459
H PP PQQP PP + Q L + P + H + M++H
Sbjct: 213 HRGPPPPPPQQPHPPPMMRQPSASSTNLAPEFHHPGPGGPPPPHYDVHSDSHGAKRMRKH 392
Query: 460 QQQ 462
Q+
Sbjct: 393 TQR 401
>TC16093 weakly similar to UP|PF21_ARATH (Q04088) Possible transcription
factor PosF21 (AtbZIP59), partial (17%)
Length = 570
Score = 37.0 bits (84), Expect = 0.021
Identities = 22/54 (40%), Positives = 31/54 (56%), Gaps = 1/54 (1%)
Frame = +1
Query: 420 LNQQQLQLLQYY-QSHVESLNPQQRQQMQQFQHHYRLMQQHQQQLRMQQQQQQQ 472
L QQ Q LQ + Q H + + Q+ QQ Q + +QQ QQQ++ QQQ+Q Q
Sbjct: 76 LAAQQFQQLQIHPQKHQQHQHQFQQPIQQQQQQQQQPIQQPQQQMQQQQQEQHQ 237
Score = 35.0 bits (79), Expect = 0.081
Identities = 29/87 (33%), Positives = 35/87 (39%), Gaps = 1/87 (1%)
Frame = +1
Query: 418 YYLNQQQLQLLQYYQSHVESLNPQQRQQMQ-QFQHHYRLMQQHQQQLRMQQQQQQQLHAG 476
Y N LL Q ++PQ+ QQ Q QFQ + QQ QQQ +QQ QQQ
Sbjct: 46 YPHNHSMHTLLAAQQFQQLQIHPQKHQQHQHQFQQPIQ-QQQQQQQQPIQQPQQQMQQQQ 222
Query: 477 VSPVQQPGQVARPPQQSLQQPSVKSCP 503
QQ G + S P P
Sbjct: 223 QEQHQQSGDLKMRSATSSPSPKDNDSP 303
>TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial (7%)
Length = 841
Score = 35.8 bits (81), Expect = 0.047
Identities = 26/82 (31%), Positives = 32/82 (38%)
Frame = +1
Query: 409 QAQPQQPPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQQQLRMQQQ 468
Q QPQ P + + Q Q H++ PQ + Q Q Q Q Q QL+ QQ
Sbjct: 61 QHQPQHHPHFQPHPQPQLQSQPQPQHIQQSQPQPQSQPQHIQ-----QPQPQPQLQHIQQ 225
Query: 469 QQQQLHAGVSPVQQPGQVARPP 490
Q Q Q PG PP
Sbjct: 226 SQPQPQFQNQHFQYPGTYPPPP 291
>AW719943
Length = 508
Score = 35.8 bits (81), Expect = 0.047
Identities = 21/46 (45%), Positives = 25/46 (53%), Gaps = 11/46 (23%)
Frame = +2
Query: 440 PQQRQQMQQFQHHYRLMQQ-----------HQQQLRMQQQQQQQLH 474
PQQ+QQ QQ Q ++ QQ QQQ + QQQQQQQ H
Sbjct: 83 PQQQQQPQQQQQLFQPQQQSPFQQNSLFNSQQQQFQQQQQQQQQQH 220
Score = 32.7 bits (73), Expect = 0.40
Identities = 25/61 (40%), Positives = 27/61 (43%)
Frame = +2
Query: 411 QPQQPPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQQQLRMQQQQQ 470
Q QQP QQQ QL Q PQQ+ QQ QQ QQQ + QQQQ
Sbjct: 89 QQQQP------QQQQQLFQ----------PQQQSPFQQNSLFNSQQQQFQQQQQQQQQQH 220
Query: 471 Q 471
Q
Sbjct: 221 Q 223
Score = 29.3 bits (64), Expect = 4.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 409 QAQPQQPPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQH 451
Q QPQQ + QQQ Q + + QQ+QQ QQ QH
Sbjct: 92 QQQPQQQQQLFQPQQQSPFQQNSLFNSQQQQFQQQQQQQQQQH 220
>AV415922
Length = 422
Score = 35.4 bits (80), Expect = 0.062
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +3
Query: 445 QMQQFQHHYRLMQQHQQQLRMQQQQQQQLHAGVSPVQQP 483
Q Q QH R QQ QQQ + QQQQQQ ++ SP+ P
Sbjct: 153 QFQGNQHQQR*QQQQQQQQQQQQQQQQPSNSQ*SPLLLP 269
>TC9649 similar to UP|Q95TP4 (Q95TP4) LD33277p, partial (4%)
Length = 754
Score = 35.4 bits (80), Expect = 0.062
Identities = 27/76 (35%), Positives = 33/76 (42%), Gaps = 3/76 (3%)
Frame = +2
Query: 439 NPQQRQQMQQFQHHYRLMQQHQQQLRMQQQQQQQLHAGVSP--VQQPGQVARPPQQ-SLQ 495
NP Q+Q QQ Q MQQ Q M QQ+ G +QQP ARPP +
Sbjct: 131 NPYQQQLQQQQQQ----MQQQQYMAAMMNQQRAMAAGGGGGGGIQQPMMYARPPPAVNYM 298
Query: 496 QPSVKSCPPQAVHIPF 511
P + PPQ + F
Sbjct: 299 YPPPYTYPPQDPYTHF 346
>CB826726
Length = 505
Score = 34.7 bits (78), Expect = 0.11
Identities = 35/110 (31%), Positives = 43/110 (38%), Gaps = 1/110 (0%)
Frame = +2
Query: 347 MAQQGGPKPNHYVNGVNGGAV-PPPPYPGAVPGAGPNAKRFKPNGEVDNGMVGAAGMGHA 405
+AQ N+ VN N + PPPP G G GPN PN + G
Sbjct: 227 IAQMNNNNNNNNVNRANRYPLHPPPPGIGYGRGGGPN-----PNPNPNQGF--------- 364
Query: 406 RPPQAQPQQPPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRL 455
QP+ P Y QQQ Q Q H N Q+QQ QQ+ +L
Sbjct: 365 -----QPRLP---YQQQQQQQ-----QQHYVQRNLAQQQQQQQWLRRAQL 475
>TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structural protein
pp78/81, partial (5%)
Length = 710
Score = 34.7 bits (78), Expect = 0.11
Identities = 28/101 (27%), Positives = 37/101 (35%), Gaps = 6/101 (5%)
Frame = +3
Query: 407 PPQAQPQQ------PPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQ 460
PPQ PQQ PPP +Q Q+ + + Q QQ+Q Q
Sbjct: 132 PPQLPPQQGLPPSFPPPNQFSQTQIPAVPQRDPYFPPPVQSQETPNQQYQQPLAPQPHPQ 311
Query: 461 QQLRMQQQQQQQLHAGVSPVQQPGQVARPPQQSLQQPSVKS 501
QQ QQ H S P +PP S+ P ++S
Sbjct: 312 PGAPPHQQYQQTPHPQYSQPAPPQH--QPPIPSINPPQLQS 428
Score = 32.3 bits (72), Expect = 0.52
Identities = 31/104 (29%), Positives = 39/104 (36%), Gaps = 5/104 (4%)
Frame = +3
Query: 407 PPQAQPQQPPPYYLNQQQLQLLQYYQSHVESLNPQQRQQMQQFQHHYRLMQQHQQQLRMQ 466
PP A PQ PP L Q+ Q+ + ++ + Q QQ+QQ L Q
Sbjct: 120 PPNAPPQLPPQQGLPPSFPPPNQFSQTQIPAVPQRDPYFPPPVQSQETPNQQYQQPLAPQ 299
Query: 467 QQQQQQLHAGVSPVQQPGQVARP----PQQSLQQPSVKSC-PPQ 505
Q G P QQ Q P P QP + S PPQ
Sbjct: 300 PHPQ----PGAPPHQQYQQTPHPQYSQPAPPQHQPPIPSINPPQ 419
>BP029370
Length = 364
Score = 34.3 bits (77), Expect = 0.14
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 437 SLNPQQRQQMQQ-FQHHYRLMQQHQQQLRMQQQQQQQLH 474
++N Q +Q+ F HH + QQ QQQ QQQQQQ H
Sbjct: 114 TVNLQYHNLLQKNFTHHIDIQQQQQQQQEQQQQQQQ*HH 230
>TC9032 similar to GB|AAP21369.1|30102902|BT006561 At4g19200 {Arabidopsis
thaliana;}, partial (50%)
Length = 502
Score = 34.3 bits (77), Expect = 0.14
Identities = 26/75 (34%), Positives = 30/75 (39%), Gaps = 11/75 (14%)
Frame = +2
Query: 356 NHYVNGVNG-------GAVPPPPYPGAVPGAGPNAKRFKPNGEVDNGMVGAAGMGHARPP 408
+H +G+ G GA PPPP PGA PG P +P GH PP
Sbjct: 104 SHLAHGIAGASHGYPPGAYPPPP-PGAYPGYPPQGYPPQP--------------GHGYPP 238
Query: 409 Q----AQPQQPPPYY 419
Q QP PP Y
Sbjct: 239 QHGYPPQPGYPPQGY 283
>CB828017
Length = 494
Score = 34.3 bits (77), Expect = 0.14
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Frame = +1
Query: 344 HPGMAQQGGPKPNHYVNGVNGGAVPPPPYPGAVPGAGPNAKRFKPNGEVDNG-----MVG 398
HP + GG PNH G G PPP P P P+ +G
Sbjct: 139 HPSIVGSGGAPPNH---GAPRGHS*PPPSPPTSPPQSPSTSP*NSSGAAAPSR*APFRQS 309
Query: 399 AAGMGHARPPQAQPQQ---PPPYY 419
A H+ PP + P + PPP +
Sbjct: 310 TASPCHSSPPPSSPARSSLPPPKF 381
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,354,626
Number of Sequences: 28460
Number of extensions: 471132
Number of successful extensions: 7935
Number of sequences better than 10.0: 179
Number of HSP's better than 10.0 without gapping: 5005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6822
length of query: 1366
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1265
effective length of database: 2,023,140
effective search space: 2559272100
effective search space used: 2559272100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC139744.2