TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139744.1 + phase: 0 
         (48 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18621                                                                25  3.3
TC15659                                                                24  7.3
AV766835                                                               24  7.3
BP037245                                                               23  9.6
TC8614                                                                 23  9.6
TC20034 weakly similar to UP|Q9LM34 (Q9LM34) T10O22.11, partial ...    23  9.6

>TC18621 
          Length = 351

 Score = 25.0 bits (53), Expect = 3.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 1   MFFHASFFSLLQSSNLLSA 19
           ++ H++FF L+ SSNL+ +
Sbjct: 112 LYLHSNFFPLMSSSNLIES 56


>TC15659 
          Length = 574

 Score = 23.9 bits (50), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 22  CLVKELDYPSLEVV-EMAVKC 41
           CL+K +DYP   +V E AV+C
Sbjct: 103 CLIKLVDYPHKTLVRETAVQC 165


>AV766835 
          Length = 328

 Score = 23.9 bits (50), Expect = 7.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 13  SSNLLSAVLCLVKELDYPS 31
           + NLL  +LC++K+L YP+
Sbjct: 179 TQNLL*CLLCVIKKLLYPN 123


>BP037245 
          Length = 388

 Score = 23.5 bits (49), Expect = 9.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 5   ASFFSLLQSSNLLSAVLCLVKELDYPSLEVVE 36
           ASF ++  S+NLLS    ++K LD+ +  +++
Sbjct: 226 ASFHAVFDSTNLLSK---MIKNLDFTNHYIID 312


>TC8614 
          Length = 560

 Score = 23.5 bits (49), Expect = 9.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 10 LLQSSNLLSAVLCLVKELDYPSLEVVEMAVKCRMDEL 46
          ++ S   L+++LCL  + + P+   +   +K RMD +
Sbjct: 23 IIWSRRCLTSLLCLTPDHNDPNYNKLVFELKTRMDTI 133


>TC20034 weakly similar to UP|Q9LM34 (Q9LM34) T10O22.11, partial (15%)
          Length = 457

 Score = 23.5 bits (49), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 2   FFHASFFSLLQSSNLLSAVLCLVKEL 27
           FFH+  FS    S +LS  LC   E+
Sbjct: 311 FFHSIVFSCFIISFILSKTLCYQNEI 388


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 910,774
Number of Sequences: 28460
Number of extensions: 8501
Number of successful extensions: 69
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of query: 48
length of database: 4,897,600
effective HSP length: 24
effective length of query: 24
effective length of database: 4,214,560
effective search space: 101149440
effective search space used: 101149440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)