TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139708.7 + phase: 0 
         (159 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16437 similar to UP|Q8WF46 (Q8WF46) NADH dehydrogenase subunit...    62  4e-11
TC9652 weakly similar to UP|AAP46157 (AAP46157) Latex abundant p...    27  1.3
TC14634 similar to UP|Q7X998 (Q7X998) mRNA-binding protein (Frag...    27  2.2
CN825309                                                               26  2.8
TC12614                                                                26  3.7
AV780371                                                               26  3.7
TC9345 homologue to UP|RRP3_SPIOL (P82412) Plastid-specific 30S ...    26  3.7
AV429256                                                               25  6.3
TC15152 similar to UP|Q8RZY3 (Q8RZY3) RING zinc finger protein-l...    25  6.3
TC16497                                                                25  6.3
BG662281                                                               25  6.3
AV409008                                                               25  6.3
BP042916                                                               25  6.3
TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPas...    25  8.2
AU089373                                                               25  8.2
AV408566                                                               25  8.2
TC17747 homologue to UP|Q8WML4 (Q8WML4) MUC1 protein precursor, ...    25  8.2
TC7949                                                                 25  8.2

>TC16437 similar to UP|Q8WF46 (Q8WF46) NADH dehydrogenase subunit 1
           (NADH-ubiquinone oxidoreductase chain 1) , partial (5%)
          Length = 548

 Score = 62.4 bits (150), Expect = 4e-11
 Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
 Frame = +1

Query: 56  PPRFTMRVASKQ----AYICRDCGYIYNERTAFDKLPDKYFCPVCGAPKRRFKPYATDVN 111
           PPRF  ++   Q     +IC DCG+IY  +  F++ P+ Y CP C APK+RF PY  DVN
Sbjct: 76  PPRFGRKLTDAQKARATHICLDCGFIYTLQKPFEEQPESYICPQCQAPKKRFSPY--DVN 249

Query: 112 KKANETDVRKARKAELQRDEAVGKAL-PIAVAVGVVVLAG 150
                               A+G  L PI V +G+V   G
Sbjct: 250 -----------------TGRAIGGGLPPIGVIIGLVAGLG 318


>TC9652 weakly similar to UP|AAP46157 (AAP46157) Latex abundant protein 1,
           partial (62%)
          Length = 576

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 21/58 (36%), Positives = 29/58 (49%), Gaps = 8/58 (13%)
 Frame = +1

Query: 3   LQVQASLYTTRLSPTATPTL--LRPLS------NPSTLKTSFFSRSLNLLLHPNQLQL 52
           +Q   +  TT  SPTA P L   RP++      NPST        +L+LLL P +L +
Sbjct: 100 IQPPTAAATTSTSPTAAPFLPPTRPVTRSEDQMNPSTTIVLSTPLTLSLLLMPMKLSM 273


>TC14634 similar to UP|Q7X998 (Q7X998) mRNA-binding protein (Fragment),
           partial (43%)
          Length = 799

 Score = 26.6 bits (57), Expect = 2.2
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
 Frame = +2

Query: 1   MALQVQASLYTTRL-SPTATPTLLRPLSNPSTLK----TSFFSRSLNL----LLHPNQLQ 51
           MA+   AS   + L SPT++  L  PLS+ STL+    +SF S SL++    L HP+ + 
Sbjct: 59  MAMATLASSSPSLLCSPTSSKLL--PLSHSSTLRLSFSSSFHSSSLSVSPTFLAHPSSVS 232

Query: 52  LAYGPPRFTMRVASKQA 68
             +G       +++  A
Sbjct: 233 GRFGKHAAAFSISASAA 283


>CN825309 
          Length = 692

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 21/70 (30%), Positives = 27/70 (38%)
 Frame = +3

Query: 90  KYFCPVCGAPKRRFKPYATDVNKKANETDVRKARKAELQRDEAVGKALPIAVAVGVVVLA 149
           K+F P  G P    KPY              K RK E+ R +   K   + V   V  L 
Sbjct: 450 KHFGPAPGVPHSHTKPYVRS-----------KGRKFEMARGKRNSKGFRV*VDYVVPFLC 596

Query: 150 GLYFYLNSTF 159
             Y++ N TF
Sbjct: 597 --YYF*NPTF 620


>TC12614 
          Length = 577

 Score = 25.8 bits (55), Expect = 3.7
 Identities = 40/152 (26%), Positives = 58/152 (37%), Gaps = 13/152 (8%)
 Frame = +1

Query: 12  TRLSPTATPTLLRPLSNPSTLKTSFFSR-------SLNLLLHP-----NQLQLAYGPPRF 59
           T   P+  P    PLS P TL     ++        +N LL P     +Q  LA+ P   
Sbjct: 106 TEFDPSKPP----PLSQPKTLIPPIQNQWRPLKKPKMNNLLLPLTEPQHQHSLAFEPD-- 267

Query: 60  TMRVASKQAYICRDCGYIYNERTAFDKLPDKYFCPVCGAPKRRFKPYATDVNKKANETDV 119
           T   A   +    D  Y  N R    +  D        AP+RRF+P A  + K  ++ + 
Sbjct: 268 TAAAAEPDS----DISYGLNLRRDAKQTEDNAHDDDAAAPRRRFQPEAMMLQKLKDDLE- 432

Query: 120 RKARKAELQRDEAVGKALPIAV-AVGVVVLAG 150
                 +L  D+   +   I V   G  +LAG
Sbjct: 433 ------KLPDDQGFDEFKDIPVEGFGAALLAG 510


>AV780371 
          Length = 503

 Score = 25.8 bits (55), Expect = 3.7
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +3

Query: 20  PTLLRPLSNPSTLKTSFFSRSLNLLLHPNQLQ 51
           P ++R   N    + S+     N+LLHPN+LQ
Sbjct: 315 PKVIRAERNGVGARYSWVKCKANVLLHPNELQ 410


>TC9345 homologue to UP|RRP3_SPIOL (P82412) Plastid-specific 30S ribosomal
           protein 3, chloroplast precursor (PSRP-3), partial (51%)
          Length = 807

 Score = 25.8 bits (55), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 20  PTLLRPLSNPSTLKTSFFSRSLNLLLHPNQLQ 51
           P ++R   + +  + S    + N+LLHPN+LQ
Sbjct: 489 PKVIRAERDGAVARYSLVKCNANVLLHPNELQ 394


>AV429256 
          Length = 337

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 14/30 (46%), Positives = 19/30 (62%)
 Frame = +3

Query: 15 SPTATPTLLRPLSNPSTLKTSFFSRSLNLL 44
          +P +T TLLRP+S P +      + SLNLL
Sbjct: 6  APPSTSTLLRPVSLPESSLPPPPTCSLNLL 95


>TC15152 similar to UP|Q8RZY3 (Q8RZY3) RING zinc finger protein-like,
           partial (11%)
          Length = 779

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 9/24 (37%), Positives = 14/24 (57%)
 Frame = +3

Query: 73  DCGYIYNERTAFDKLPDKYFCPVC 96
           +CG+ Y+ +     +  K FCPVC
Sbjct: 387 NCGHSYHYQCIQQWVEQKNFCPVC 458


>TC16497 
          Length = 436

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 13/29 (44%), Positives = 15/29 (50%)
 Frame = -1

Query: 8   SLYTTRLSPTATPTLLRPLSNPSTLKTSF 36
           SL T  LSP  +  L+ PLS    L T F
Sbjct: 157 SLLTNNLSPPPSIFLITPLSESPLLSTKF 71


>BG662281 
          Length = 399

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 11/29 (37%), Positives = 14/29 (47%)
 Frame = +1

Query: 64  ASKQAYICRDCGYIYNERTAFDKLPDKYF 92
           +S   Y C +CG   N   A+   PD YF
Sbjct: 190 SSSSIYCCTECGTDLNLNPAYAFPPDFYF 276


>AV409008 
          Length = 418

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 12  TRLSPTATPTLLRPLSNPSTLKTSFFSRSLNLLLHPNQLQL 52
           T  + TAT   + P   P+ +   F +  L  L +PN + L
Sbjct: 176 TTATATATAAEIVPRKGPAAILQGFVNDCLRRLFYPNDVHL 298


>BP042916 
          Length = 490

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (52%)
 Frame = +2

Query: 78  YNERTAFDKLPDKYFCPVCGAPKRRFKP 105
           +NE + FDK+  K+ C     P + F P
Sbjct: 140 FNEESCFDKIEYKFCCRFIERPLQLFYP 223


>TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPase subunit
           RPT4a, partial (49%)
          Length = 648

 Score = 24.6 bits (52), Expect = 8.2
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 1   MALQVQASLYT-TRLSPTATPTLLRPLSNPSTLKTSFF 37
           +AL ++ SL    R SP   PTL R   + S L  SFF
Sbjct: 282 LALTIKRSLSRGLRTSPIICPTL*RDFKSSSVLLYSFF 169


>AU089373 
          Length = 717

 Score = 24.6 bits (52), Expect = 8.2
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = -1

Query: 20  PTLLRPLSNPSTLKTSFFSRSLNLLLHPNQLQ 51
           P ++R   N    + S    + N+ LHPN+LQ
Sbjct: 390 PKVIRAERNGVVARYSLVKCNANVXLHPNELQ 295


>AV408566 
          Length = 423

 Score = 24.6 bits (52), Expect = 8.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = -3

Query: 20  PTLLRPLSNPSTLKTSFFSRS-----LNLLLHPNQL 50
           P +LRPLSNP TL   + +R      L LLL  + L
Sbjct: 202 PGMLRPLSNP*TLLRVWLNRESKIPMLGLLLLSSSL 95


>TC17747 homologue to UP|Q8WML4 (Q8WML4) MUC1 protein precursor, partial
           (4%)
          Length = 507

 Score = 24.6 bits (52), Expect = 8.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 116 ETDVRKARKAELQRDEAVGKALPIAVAVGVVVLAGLYF 153
           ++D   +   E+   + V   + + VAV VVVLAG+ F
Sbjct: 287 DSDSSSSGSGEMTGRKKVAIVIGVVVAVTVVVLAGMGF 400


>TC7949 
          Length = 1183

 Score = 24.6 bits (52), Expect = 8.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 11  TTRLSPTATPTLLRP 25
           T  LSPTATP LL P
Sbjct: 791 TAPLSPTATPLLLAP 747


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,546,392
Number of Sequences: 28460
Number of extensions: 33164
Number of successful extensions: 233
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of query: 159
length of database: 4,897,600
effective HSP length: 83
effective length of query: 76
effective length of database: 2,535,420
effective search space: 192691920
effective search space used: 192691920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)