TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139708.3 + phase: 0 
         (150 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15953 similar to UP|B2_DAUCA (P37707) B2 protein, partial (71%)      55  4e-11
TC7925 homologue to UP|RPE_SPIOL (Q43157) Ribulose-phosphate 3-e...    28  0.88
TC11719                                                                27  1.1
AV414850                                                               27  1.1
AV408408                                                               27  1.1
BP030995                                                               27  1.1
TC12936 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, pa...    27  1.5
TC9518 weakly similar to UP|Q7U4M5 (Q7U4M5) Cell division protei...    27  2.0
TC8875                                                                 26  2.5
BP074936                                                               26  2.5
TC9904 weakly similar to UP|Q8GU88 (Q8GU88) PDR-like ABC transpo...    26  3.3
TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, par...    26  3.3
BP068291                                                               25  5.7
TC15756 similar to UP|ERF2_ARATH (O80338) Ethylene responsive el...    25  5.7
TC13103                                                                25  7.4
AU088980                                                               24  9.7
AV411437                                                               24  9.7
TC18352 similar to UP|O23240 (O23240) Actin interacting protein,...    24  9.7

>TC15953 similar to UP|B2_DAUCA (P37707) B2 protein, partial (71%)
          Length = 919

 Score = 55.5 bits (132), Expect(2) = 4e-11
 Identities = 42/117 (35%), Positives = 56/117 (46%), Gaps = 10/117 (8%)
 Frame = +2

Query: 31  SYRVFALPAGRKHIVERINPGMHLFLFDTDVKLLYGIYLATSTGMLNIEPYAF------- 83
           +Y VF    G    V  I PG+ LFL++     L+GI+ A S G  NI+P A+       
Sbjct: 263 NYLVFLQGTGDS--VRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPSAWEDKKCPG 436

Query: 84  GGRFPAQVSFKILKDCLPLPENDFKHAIKDNYQKHY---KFNPELNIRQVSSAIVTF 137
             RFPAQV     K C PL E+ F+  +      HY   KF  ELN+ +  S +  F
Sbjct: 437 ESRFPAQVQVLTRKVCEPLEEDSFRPIL-----HHYDGPKFRLELNVPEALSLLDIF 592



 Score = 26.6 bits (57), Expect(2) = 4e-11
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 12  DKLAGFIFMCNRMTKPECFSYRVFALP 38
           + + G+IF+CN  T  E    ++F LP
Sbjct: 199 ETIGGYIFVCNNDTMAENLKRQLFGLP 279


>TC7925 homologue to UP|RPE_SPIOL (Q43157) Ribulose-phosphate 3-epimerase,
           chloroplast precursor  (Pentose-5-phosphate 3-epimerase)
           (PPE) (RPE) (R5P3E) , partial (94%)
          Length = 1387

 Score = 27.7 bits (60), Expect = 0.88
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 133 AIVTFRFCFCFLCFAFSF 150
           A ++F FCFCF CF F F
Sbjct: 154 AAISFCFCFCF-CFCFCF 104



 Score = 25.0 bits (53), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 128 RQVSSAIVTFRFCFCFLCFAF 148
           ++V++    F FCFCF CF F
Sbjct: 163 KEVAAISFCFCFCFCF-CFCF 104


>TC11719 
          Length = 376

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 134 IVTFRFCFCFLCFAFSF 150
           ++ F+ C CF+CF F F
Sbjct: 188 VIFFQSCICFVCFCFFF 238


>AV414850 
          Length = 291

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = -1

Query: 121 FNPELNIRQVSSA-IVTFRF---CFCFLCFAFSF 150
           F  EL++++ S A +V + F   CFCFL   FSF
Sbjct: 186 FTSELSLKEKSEACLVVWSFGCWCFCFLFLFFSF 85


>AV408408 
          Length = 429

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 11/19 (57%), Positives = 16/19 (83%)
 Frame = +3

Query: 5  VVGTDTPDKLAGFIFMCNR 23
          ++GT +PDK+AG I MC+R
Sbjct: 33 MMGTLSPDKVAGKIVMCDR 89


>BP030995 
          Length = 458

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 134 IVTFRFCFCFLCFAFSF 150
           ++ F+ C CF+CF F F
Sbjct: 187 VIFFQSCICFVCFCFFF 137


>TC12936 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, partial (48%)
          Length = 491

 Score = 26.9 bits (58), Expect = 1.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 104 ENDFKHAIKDNYQKHYKFNPELNIRQVSSAIVTFRFCFCFLCFAFS 149
           E  + +++ DNYQK    N +LNI    S         C +CF+ S
Sbjct: 468 ECSYTNSLTDNYQKKIWKNKQLNIMLTIS--------LCLICFSSS 355


>TC9518 weakly similar to UP|Q7U4M5 (Q7U4M5) Cell division protein possibly
           involved in shape determination precursor, partial (6%)
          Length = 586

 Score = 26.6 bits (57), Expect = 2.0
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 138 RFCFCFLCFAFS 149
           RFCFC++C AFS
Sbjct: 321 RFCFCWVCEAFS 356


>TC8875 
          Length = 579

 Score = 26.2 bits (56), Expect = 2.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +2

Query: 91  VSFKILKDCL----PLPENDFKHAIKDNYQ 116
           V   IL+ CL    PLP N FK  +K N+Q
Sbjct: 8   VGIAILRRCLASFQPLPPNWFKFELKGNWQ 97


>BP074936 
          Length = 161

 Score = 26.2 bits (56), Expect = 2.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 137 FRFCFCFLCFAF 148
           FRFCFCF  F+F
Sbjct: 53  FRFCFCFCPFSF 88


>TC9904 weakly similar to UP|Q8GU88 (Q8GU88) PDR-like ABC transporter,
           partial (6%)
          Length = 547

 Score = 25.8 bits (55), Expect = 3.3
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 100 LPLPENDFKHAIKDNYQKHYKFNPELNIRQVSSAIVTFRFCFCFLCFAFS 149
           L +P    + A+KD  + HY F  +  +  V+  +V F   F F+ FAF+
Sbjct: 121 LSVPGRSDQPALKDYIEDHYGFKSDF-MGPVACVLVAFPVFFAFV-FAFA 264


>TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (31%)
          Length = 502

 Score = 25.8 bits (55), Expect = 3.3
 Identities = 10/23 (43%), Positives = 12/23 (51%)
 Frame = +2

Query: 128 RQVSSAIVTFRFCFCFLCFAFSF 150
           R     ++ F FCFCFL F   F
Sbjct: 200 RVFHGVVLCFCFCFCFLSFCCCF 268


>BP068291 
          Length = 444

 Score = 25.0 bits (53), Expect = 5.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 132 SAIVTFRFCFCFLCF 146
           S I+T   CFC LCF
Sbjct: 285 SFIITLTDCFCLLCF 241


>TC15756 similar to UP|ERF2_ARATH (O80338) Ethylene responsive element
           binding factor 2 (AtERF2), partial (29%)
          Length = 688

 Score = 25.0 bits (53), Expect = 5.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 13  KLAGFIFMCNRMTKPECFSYRVFAL 37
           K+  F+F     T P CF + +F+L
Sbjct: 598 KITNFMFTNPNKTSPSCFFFHLFSL 524


>TC13103 
          Length = 730

 Score = 24.6 bits (52), Expect = 7.4
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = -2

Query: 111 IKDNYQKHYKFNPELNIRQVSSAIVTFRF 139
           I++ +QK+ K NP LN +Q+   I    F
Sbjct: 663 IRNKFQKN*KKNPRLNQKQIP*TIFLLHF 577


>AU088980 
          Length = 360

 Score = 24.3 bits (51), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (82%)
 Frame = -1

Query: 133 AIVTFRFCFCFL 144
           A+VTF+ C CFL
Sbjct: 51  ALVTFKICLCFL 16


>AV411437 
          Length = 417

 Score = 24.3 bits (51), Expect = 9.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 134 IVTFRFCFCFLC 145
           ++ F FC+CFLC
Sbjct: 73  LLLFFFCYCFLC 38


>TC18352 similar to UP|O23240 (O23240) Actin interacting protein, partial
           (18%)
          Length = 547

 Score = 24.3 bits (51), Expect = 9.7
 Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 115 YQKHYKFNPELNIRQVSSA-IVTFRFCFCFL 144
           Y  H KF   L++  +    ++ ++FCFC +
Sbjct: 261 YSTHIKFFLTLSLHNLLDPNLIVYKFCFCIV 353


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.331    0.146    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,070,396
Number of Sequences: 28460
Number of extensions: 43562
Number of successful extensions: 428
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of query: 150
length of database: 4,897,600
effective HSP length: 82
effective length of query: 68
effective length of database: 2,563,880
effective search space: 174343840
effective search space used: 174343840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)