TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139708.14 - phase: 0 
         (992 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15966 similar to UP|Q8L5C2 (Q8L5C2) 110 kDa 4SNc-tudor protein...   421  e-118
AV407003                                                              125  4e-29
TC8406 similar to UP|Q8L5C2 (Q8L5C2) 110 kDa 4SNc-tudor protein,...   121  5e-28
BP085388                                                              103  2e-22
TC17305 weakly similar to UP|Q9FLT0 (Q9FLT0) Transcription facto...   100  1e-21
TC16463 similar to UP|AAR87242 (AAR87242) Expressed protein, par...    30  1.9
AV418230                                                               30  1.9
TC10292 homologue to UP|Q8GSM8 (Q8GSM8) Squalene monooxygenase 1...    30  2.5
TC16343 similar to UP|Q8LB75 (Q8LB75) Galactose-1-phosphate urid...    29  3.2
TC14593 similar to UP|Q8H1U3 (Q8H1U3) CDC26, partial (31%)             28  9.3

>TC15966 similar to UP|Q8L5C2 (Q8L5C2) 110 kDa 4SNc-tudor protein, partial
           (25%)
          Length = 891

 Score =  421 bits (1083), Expect = e-118
 Identities = 211/249 (84%), Positives = 224/249 (89%)
 Frame = +1

Query: 742 EVLGGGKFYVQTVGDQKIASIQNQLASLNLKDAPVIGAFNPKKGDIVLCYFHADSSWYRA 801
           EVLGG KFYVQTVGDQKIASIQ QLASLNLK+APV+GAF+PKKGD VLCYFH D SWYRA
Sbjct: 1   EVLGGDKFYVQTVGDQKIASIQQQLASLNLKEAPVLGAFSPKKGDTVLCYFHGDKSWYRA 180

Query: 802 MVVNTPRGPVESSKDAFEVFYIDYGNQEVVPYSQLRPLDPSVSAAPGLAQLCSLAYIKLP 861
           MVVNTPRGPVES +D FEVFYIDYGNQE V YSQLRPLD SVSAAPGLAQLCSLAYIK P
Sbjct: 181 MVVNTPRGPVESPQDIFEVFYIDYGNQEQVAYSQLRPLDQSVSAAPGLAQLCSLAYIKSP 360

Query: 862 NLEEDFGQEAAEYLSELTLSSGKEFRAMVEEKDTTGGKVKGQGTGPIIAVTLVAVDSEIS 921
           +LEEDFGQEAAEYLSELTLSSGKEFRA VEE+DT+GGK KGQGTG I+AVTLVAVD+EIS
Sbjct: 361 SLEEDFGQEAAEYLSELTLSSGKEFRAQVEERDTSGGKAKGQGTGTILAVTLVAVDAEIS 540

Query: 922 VNAAMLQEGLARMEKRNRWDRTARKQALDNLEMFQGEARTARRGMWQYGDIQSDDEDTAP 981
           VNAAMLQEGLARMEKRNRWDR  RK  LD+LE FQ EART RRGMWQYGD++SD+ED  P
Sbjct: 541 VNAAMLQEGLARMEKRNRWDRKERKAGLDSLEKFQDEARTKRRGMWQYGDVESDEED-GP 717

Query: 982 PQRKAGGGR 990
           P RKAG GR
Sbjct: 718 PARKAGTGR 744


>AV407003 
          Length = 222

 Score =  125 bits (313), Expect = 4e-29
 Identities = 58/68 (85%), Positives = 64/68 (93%)
 Frame = +1

Query: 62  EPFAWESREFLRKLLIGKEITFRIDYTVPSINREFGTVFLGDKNVALLVVSQGWAKVREQ 121
           EPFAWESRE+LRKL IGKE+TFR+DY+V SINR+FGTVFLGDKNV +LVVSQGWAKVREQ
Sbjct: 19  EPFAWESREYLRKLCIGKEVTFRVDYSVASINRDFGTVFLGDKNVGVLVVSQGWAKVREQ 198

Query: 122 GQQKGEAS 129
           GQQKGE S
Sbjct: 199 GQQKGEVS 222



 Score = 30.4 bits (67), Expect = 1.4
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 434 PYAREAKEFLRTRLIGRQVNVQMEYSRKVGPVDGSAVPPGAVDSRVMDFGSVFV 487
           P+A E++E+LR   IG++V  +++YS               V S   DFG+VF+
Sbjct: 22  PFAWESREYLRKLCIGKEVTFRVDYS---------------VASINRDFGTVFL 138


>TC8406 similar to UP|Q8L5C2 (Q8L5C2) 110 kDa 4SNc-tudor protein, partial
           (7%)
          Length = 562

 Score =  121 bits (304), Expect = 5e-28
 Identities = 57/72 (79%), Positives = 62/72 (85%)
 Frame = +1

Query: 919 EISVNAAMLQEGLARMEKRNRWDRTARKQALDNLEMFQGEARTARRGMWQYGDIQSDDED 978
           EISVNAAMLQEGLARMEKRNRWDR  RK  LD+L+ FQ +AR  RRGMWQYGD++SDDED
Sbjct: 1   EISVNAAMLQEGLARMEKRNRWDRKERKVGLDSLQKFQDDARKERRGMWQYGDVESDDED 180

Query: 979 TAPPQRKAGGGR 990
           TAPP RKAG GR
Sbjct: 181 TAPPARKAGAGR 216


>BP085388 
          Length = 465

 Score =  103 bits (256), Expect = 2e-22
 Identities = 47/62 (75%), Positives = 51/62 (81%)
 Frame = -3

Query: 929 EGLARMEKRNRWDRTARKQALDNLEMFQGEARTARRGMWQYGDIQSDDEDTAPPQRKAGG 988
           EGLARMEKRNRWDR  RK  LD+LE FQ +AR  RRGMWQYGD++SDDED APP RKAG 
Sbjct: 463 EGLARMEKRNRWDRKERKVGLDSLEKFQDDARKERRGMWQYGDVESDDEDDAPPARKAGA 284

Query: 989 GR 990
           GR
Sbjct: 283 GR 278


>TC17305 weakly similar to UP|Q9FLT0 (Q9FLT0) Transcription factor-like
           protein (100 kDa coactivator-like protein), partial (5%)
          Length = 616

 Score =  100 bits (249), Expect = 1e-21
 Identities = 48/67 (71%), Positives = 58/67 (85%)
 Frame = -3

Query: 1   MAATAAGNSAWYKAKVKAVPSGDCIVVVSVAANAKLGVLPEKSITLSSLIAPRLARRGGV 60
           MA+ A G + WY+ +VKAVPSGDC+V+V+VA++ K G LPEKSITL+SLI PRLARRGGV
Sbjct: 200 MASAATGATGWYRGRVKAVPSGDCLVIVAVASS-KPGPLPEKSITLASLITPRLARRGGV 24

Query: 61  DEPFAWE 67
           DEPFAWE
Sbjct: 23  DEPFAWE 3



 Score = 32.0 bits (71), Expect = 0.49
 Identities = 17/57 (29%), Positives = 30/57 (51%)
 Frame = -3

Query: 382 FTGKVVEVVSGDCVIVADDSIPYGSPQAERRVNLSSIRCPKMGNPRRDEKPAPYARE 438
           + G+V  V SGDC+++   +     P  E+ + L+S+  P++   RR     P+A E
Sbjct: 167 YRGRVKAVPSGDCLVIVAVASSKPGPLPEKSITLASLITPRLA--RRGGVDEPFAWE 3


>TC16463 similar to UP|AAR87242 (AAR87242) Expressed protein, partial (92%)
          Length = 640

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 14/32 (43%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
 Frame = +3

Query: 659 TFLGSLWESRANGAVPLLEAGLA-KLQTSFGS 689
           T++G LW  R   A P+L+ GL   +  SFGS
Sbjct: 93  TWIGHLWRPRLQAAKPILQRGLVYSISLSFGS 188


>AV418230 
          Length = 405

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 20/47 (42%), Positives = 25/47 (52%)
 Frame = +2

Query: 163 NLPPSALGDASNFDAMGLLAKNKGVPMEALVEQVRDGSTLRIYLLPE 209
           NLPP  LGD S+  A+ L+A   G+P  AL  +  DG    I   PE
Sbjct: 8   NLPPRPLGDRSHPTAVVLVASPGGLP-PALFCRWGDGGLAEIRAAPE 145


>TC10292 homologue to UP|Q8GSM8 (Q8GSM8) Squalene monooxygenase 1  , partial
           (33%)
          Length = 663

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = -1

Query: 413 VNLSSIRCPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVNVQMEYSRKVGPVDGSAVPP 472
           +NLS I         R ++P PY   AK++ RT+L GR  N +   S++ GP +    PP
Sbjct: 402 INLSPIHMRLGEGNGRSKRPTPYIATAKKW-RTKLKGRGFNPE---SKETGPSENK--PP 241


>TC16343 similar to UP|Q8LB75 (Q8LB75) Galactose-1-phosphate uridyl
           transferase-like protein, partial (28%)
          Length = 466

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 19/45 (42%), Positives = 23/45 (50%), Gaps = 9/45 (20%)
 Frame = +2

Query: 249 PAEPRAPLTSAQR---------LAVSASAAETSADPFGADAKFFT 284
           P EP APL S+Q          LA SASA  TSA P  + ++  T
Sbjct: 116 PREPNAPLISSQNHPPTRTRTPLAPSASATSTSAHPRSSGSRPMT 250


>TC14593 similar to UP|Q8H1U3 (Q8H1U3) CDC26, partial (31%)
          Length = 1112

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
 Frame = -2

Query: 897 GGKVKGQGTGPIIAVTLVAVDSEISVNAAMLQ------EGLARMEKRNR----WDRTARK 946
           GG V+G   G  +AV+    ++E+ ++  + +      +G   ME+R +    W R  R+
Sbjct: 337 GGDVEGGEQGGDLAVSFGVGEAELDLDLHIGRGERKGADGEGFMERRGQCDALWKRDPRR 158

Query: 947 QALDNLEMFQGEARTARRGMWQYG 970
              D  E  +      RR  W+YG
Sbjct: 157 DRTDE*EWRRQWWLLRRRWRWRYG 86


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,801,928
Number of Sequences: 28460
Number of extensions: 161977
Number of successful extensions: 766
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of query: 992
length of database: 4,897,600
effective HSP length: 99
effective length of query: 893
effective length of database: 2,080,060
effective search space: 1857493580
effective search space used: 1857493580
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)