TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139601.8 - phase: 0 
         (268 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP051762                                                              301  1e-82
TC8136 similar to GB|AAB60729.1|2160166|F21M12 F21M12.13 {Arabid...    29  0.95
TC15665 similar to PIR|T02543|T02543 aldehyde dehydrogenase homo...    28  2.1
BP055644                                                               27  3.6
AV769441                                                               26  6.2

>BP051762 
          Length = 557

 Score =  301 bits (770), Expect = 1e-82
 Identities = 143/181 (79%), Positives = 163/181 (90%)
 Frame = +3

Query: 1   MGHLYALDFDGVLCDTCGETAISALKAAKLRWPDLFGSVDSSTEDWIVEQMIKVRPVVET 60
           MG LYALDFDGV+CD+CGE+++SALKAAK+RWP LF  V+S+T+DWIV+QM  VRPVVET
Sbjct: 15  MGELYALDFDGVICDSCGESSLSALKAAKVRWPGLFDGVNSATQDWIVDQMHAVRPVVET 194

Query: 61  GYETLLLVRLLLETRVPSIRKSSVAEGLTVEGILEDWFKLKPIVMEEWNENRDDLIDLFG 120
           GYE LLLVRLLLETR PSIRKSSVAEGLTV+GILE W KLKP++MEEW ENRD LIDLFG
Sbjct: 195 GYENLLLVRLLLETRAPSIRKSSVAEGLTVDGILEKWSKLKPVIMEEWGENRDALIDLFG 374

Query: 121 KVRDDWLENDFAGWIQGNRFYPGVADALRFASSKVYIVTTKQGRFADALLRELAGITIPP 180
           KVRD+WLE +FA WI  NR YPGV+DAL+FASS+VYIVTTKQ RFADA+LRELAG+TIPP
Sbjct: 375 KVRDEWLEQNFATWIGANRIYPGVSDALKFASSRVYIVTTKQSRFADAILRELAGVTIPP 554

Query: 181 E 181
           E
Sbjct: 555 E 557


>TC8136 similar to GB|AAB60729.1|2160166|F21M12 F21M12.13 {Arabidopsis
           thaliana;}, partial (70%)
          Length = 1659

 Score = 28.9 bits (63), Expect = 0.95
 Identities = 12/53 (22%), Positives = 24/53 (44%)
 Frame = +1

Query: 138 NRFYPGVADALRFASSKVYIVTTKQGRFADALLRELAGITIPPERIYGLGTGP 190
           N+ Y G   +       + + T     ++   +  ++G T+P + + GLG GP
Sbjct: 592 NQSYAGSTFSATLVQDSLSLATDAVPNYSFGCINAISGATVPAQGLLGLGRGP 750


>TC15665 similar to PIR|T02543|T02543 aldehyde dehydrogenase homolog
           At2g37770 - Arabidopsis                thaliana
           {Arabidopsis thaliana;}, partial (59%)
          Length = 582

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 12/35 (34%), Positives = 20/35 (56%)
 Frame = +1

Query: 210 HFVEDRIAALKNVIKEPELDNWNLYLVNWGFNTQK 244
           H  ED   A    +++ +LD  +LYL++W   T+K
Sbjct: 316 HAPEDVPIAFDRTLQDLQLDYIDLYLIHWPIRTKK 420


>BP055644 
          Length = 569

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 45  DWIVEQMIKVRPVVETGYETLLLVRLLLETRVPSIRKSSV 84
           +WI  Q+IK+RP   T Y+   L RLLL   +  I K  +
Sbjct: 447 NWIHNQLIKLRP---TWYKVRELPRLLLLKPICQITKQQI 557


>AV769441 
          Length = 594

 Score = 26.2 bits (56), Expect = 6.2
 Identities = 11/31 (35%), Positives = 18/31 (57%)
 Frame = +3

Query: 208 TLHFVEDRIAALKNVIKEPELDNWNLYLVNW 238
           T H  ED   A    +++ +LD  +LYL++W
Sbjct: 306 TDHLPEDVPKAFDRTLRDLQLDYLDLYLIHW 398


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,371,120
Number of Sequences: 28460
Number of extensions: 53538
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of query: 268
length of database: 4,897,600
effective HSP length: 89
effective length of query: 179
effective length of database: 2,364,660
effective search space: 423274140
effective search space used: 423274140
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)