TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139601.2 - phase: 0 
         (352 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14185 similar to UP|Q7Y256 (Q7Y256) Beta-cyanoalanine synthase...   639  0.0
TC8523 homologue to UP|Q8W1A0 (Q8W1A0) Cysteine synthase, complete    408  e-115
TC14692 similar to UP|CYSK_CITLA (Q43317) Cysteine synthase  (Be...   263  3e-71
BP071870                                                              180  4e-46
TC8232 similar to UP|AAQ57205 (AAQ57205) O-acetylserine (Thiol)l...   160  4e-40
TC14186 similar to UP|Q7Y256 (Q7Y256) Beta-cyanoalanine synthase...   151  1e-37
TC17110 similar to UP|Q9FS26 (Q9FS26) Plastidic cysteine synthas...   136  6e-33
TC12007 similar to UP|Q8W1A0 (Q8W1A0) Cysteine synthase, partial...   130  3e-31
BP067741                                                              104  2e-23
TC10541 similar to UP|CYSL_CAPAN (P31300) Cysteine synthase, chl...   103  3e-23
BP063059                                                               96  9e-21
BP067639                                                               79  1e-15
TC18952 similar to GB|AAD54324.1|5853119|AF177212 threonine dehy...    72  2e-13
BP052652                                                               65  2e-11
BP069011                                                               54  4e-08
BI420492                                                               27  4.0
TC9630 similar to UP|AAS48063 (AAS48063) NIP3, partial (18%)           27  5.2
BP040546                                                               27  5.2

>TC14185 similar to UP|Q7Y256 (Q7Y256) Beta-cyanoalanine synthase, partial
           (96%)
          Length = 1506

 Score =  639 bits (1648), Expect = 0.0
 Identities = 322/352 (91%), Positives = 338/352 (95%)
 Frame = +1

Query: 1   MRRLMTTTATSADSSSFAQRIRDLPKDLPGTNIKKHVSQLIGRTPLVYLNKVTEGCGAYI 60
           +RRL +T ATSADS S AQ+IRDLPKDLPG NIKKHVS+LIGRTPLVYLNKVTEGCGAYI
Sbjct: 145 LRRLFST-ATSADSPSLAQKIRDLPKDLPGNNIKKHVSELIGRTPLVYLNKVTEGCGAYI 321

Query: 61  AVKQEMMQPTASIKDRPALAMMEDAEKKNLITPGKTILIEPTSGNMGISLAFMAAMKGYK 120
           AVKQEMMQPTAS+KDRPALAM+ DAEKKNLITPGKTILIEPTSGNMGIS+AF+ A+KGYK
Sbjct: 322 AVKQEMMQPTASVKDRPALAMIADAEKKNLITPGKTILIEPTSGNMGISMAFIGALKGYK 501

Query: 121 MVLTMPSYTSLERRVCMRAFGAELILTDPTKGMGGTVKKAYDLLESTPNAFMLQQFSNPA 180
           +VLTMPSYTS+ERRV MRAFGAELILTDP KGMGGTVKKAYDLLESTPNAFMLQQFSNPA
Sbjct: 502 VVLTMPSYTSMERRVTMRAFGAELILTDPAKGMGGTVKKAYDLLESTPNAFMLQQFSNPA 681

Query: 181 NTKVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPSESNV 240
           NT+VHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKS+NPNVKIYGVEPSESNV
Sbjct: 682 NTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNV 861

Query: 241 LNGGKPGPHQITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARTLALKEGLMVGISSGA 300
           LNGGKPGPH ITGNGVGFKPDILDMDVM+KVLEVSSEDAV MAR LALKEGLMVGISSGA
Sbjct: 862 LNGGKPGPHHITGNGVGFKPDILDMDVMDKVLEVSSEDAVKMARILALKEGLMVGISSGA 1041

Query: 301 NTVAALRLASLPENKGKLIVTVHPSFGERYLSSVLFQDLRTEAENMQPVSVD 352
           NTVAALRLASLPENKGKLIVT+HPSFGERYLSSVLFQ+LR EAE MQPVSVD
Sbjct: 1042NTVAALRLASLPENKGKLIVTIHPSFGERYLSSVLFQELRDEAEKMQPVSVD 1197


>TC8523 homologue to UP|Q8W1A0 (Q8W1A0) Cysteine synthase, complete
          Length = 1361

 Score =  408 bits (1049), Expect = e-115
 Identities = 195/319 (61%), Positives = 255/319 (79%)
 Frame = +3

Query: 28  LPGTNIKKHVSQLIGRTPLVYLNKVTEGCGAYIAVKQEMMQPTASIKDRPALAMMEDAEK 87
           L  + I + V+QLIG+TPLVYLNK+ +GC A +A K E+M+P +S+KDR   +M+ DAE+
Sbjct: 84  LERSGIAEDVTQLIGKTPLVYLNKLADGCVARVAAKLELMEPCSSVKDRIGYSMIADAEE 263

Query: 88  KNLITPGKTILIEPTSGNMGISLAFMAAMKGYKMVLTMPSYTSLERRVCMRAFGAELILT 147
           K LITPGK++LIEPTSGN GI LAFMAA KGYK+++TMP+  SLERR  + AFGAEL+LT
Sbjct: 264 KGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRTILLAFGAELVLT 443

Query: 148 DPTKGMGGTVKKAYDLLESTPNAFMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVMG 207
           DP KGM G V+KA +++  TPN++MLQQF N AN KVH+ETTGPEIW+ T G+VD  V G
Sbjct: 444 DPAKGMKGAVQKAEEIVAKTPNSYMLQQFENAANPKVHYETTGPEIWKGTAGKVDALVSG 623

Query: 208 IGSGGTVSGVGQYLKSQNPNVKIYGVEPSESNVLNGGKPGPHQITGNGVGFKPDILDMDV 267
           +G+GGT++G G+YLK QN N+K+  VEP ES VL+GGKPGPH+I G G GF P +LD+++
Sbjct: 624 VGTGGTITGAGKYLKEQNSNIKMIAVEPVESPVLSGGKPGPHKIQGIGAGFVPGVLDVNL 803

Query: 268 MEKVLEVSSEDAVNMARTLALKEGLMVGISSGANTVAALRLASLPENKGKLIVTVHPSFG 327
           +++V+++SS++A+  A+ LALKEGL VGISSGA   AA+++A  PEN GKLIV V PSFG
Sbjct: 804 LDEVIQISSDEAIETAKLLALKEGLFVGISSGAAAAAAIKIAKRPENAGKLIVVVFPSFG 983

Query: 328 ERYLSSVLFQDLRTEAENM 346
           ERYLSSVLF+ +R EAE+M
Sbjct: 984 ERYLSSVLFESVRREAESM 1040


>TC14692 similar to UP|CYSK_CITLA (Q43317) Cysteine synthase
           (Beta-pyrazolylalanine synthase) (Beta-PA/CSase)
           (L-mimosine synthase)  (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) ,
           partial (62%)
          Length = 834

 Score =  263 bits (672), Expect = 3e-71
 Identities = 123/198 (62%), Positives = 157/198 (79%)
 Frame = +3

Query: 31  TNIKKHVSQLIGRTPLVYLNKVTEGCGAYIAVKQEMMQPTASIKDRPALAMMEDAEKKNL 90
           T I   V++LIG TPLVYLN++ +GC   IA K EMM+P +S+KDR   +M+ DAE+K L
Sbjct: 240 TTIANDVTELIGNTPLVYLNRIVDGCVGRIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 419

Query: 91  ITPGKTILIEPTSGNMGISLAFMAAMKGYKMVLTMPSYTSLERRVCMRAFGAELILTDPT 150
           I PG+++LIE TSGN GI LAFMAA KGYK+++TMPS  SLERR  +RAFGAEL+LTDP 
Sbjct: 420 IKPGESVLIEATSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRTILRAFGAELVLTDPA 599

Query: 151 KGMGGTVKKAYDLLESTPNAFMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVMGIGS 210
           +GM G V+KA ++ E TPN+++LQQF NPAN KVH+ETTGPEIW+ +NG+VD  V GIG+
Sbjct: 600 RGMKGAVQKAEEIREKTPNSYILQQFENPANPKVHYETTGPEIWKSSNGKVDALVSGIGT 779

Query: 211 GGTVSGVGQYLKSQNPNV 228
           GGT++G G+YLK QNP V
Sbjct: 780 GGTITGAGKYLKEQNPGV 833


>BP071870 
          Length = 430

 Score =  180 bits (456), Expect = 4e-46
 Identities = 85/133 (63%), Positives = 107/133 (79%)
 Frame = +2

Query: 60  IAVKQEMMQPTASIKDRPALAMMEDAEKKNLITPGKTILIEPTSGNMGISLAFMAAMKGY 119
           IAVK E MQ   S+KDR AL+M+EDAE K LIT GKTIL+EPTSGN GI LAF+AA +GY
Sbjct: 32  IAVKLEYMQACGSVKDRIALSMIEDAENKGLITRGKTILVEPTSGNTGIGLAFIAAWRGY 211

Query: 120 KMVLTMPSYTSLERRVCMRAFGAELILTDPTKGMGGTVKKAYDLLESTPNAFMLQQFSNP 179
           K+++ MPSY SLER++ +RAFGAE+ LTDP KG+ G  +KA +++  TP ++MLQQF NP
Sbjct: 212 KVIVVMPSYVSLERKIILRAFGAEVYLTDPAKGVDGVFQKAEEIVAETPGSYMLQQFENP 391

Query: 180 ANTKVHFETTGPE 192
           AN K+H+ETTGPE
Sbjct: 392 ANPKIHYETTGPE 430


>TC8232 similar to UP|AAQ57205 (AAQ57205) O-acetylserine (Thiol)lyase
           (Fragment), partial (42%)
          Length = 646

 Score =  160 bits (404), Expect = 4e-40
 Identities = 79/118 (66%), Positives = 98/118 (82%)
 Frame = +2

Query: 229 KIYGVEPSESNVLNGGKPGPHQITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARTLAL 288
           K+YGVEPSES +L+GGKPGPH+I G G GF P ILD+D++++V++VSSE+AV  A+ LAL
Sbjct: 2   KLYGVEPSESAILSGGKPGPHKIQGIGAGFIPGILDVDILDEVVQVSSEEAVETAKLLAL 181

Query: 289 KEGLMVGISSGANTVAALRLASLPENKGKLIVTVHPSFGERYLSSVLFQDLRTEAENM 346
           KEGL+VGISSGA   AA++LA  PEN GKLIV V PSFGERYLSSVLF+  + EAE+M
Sbjct: 182 KEGLLVGISSGAAAAAAIKLARRPENDGKLIVVVFPSFGERYLSSVLFEATQREAESM 355


>TC14186 similar to UP|Q7Y256 (Q7Y256) Beta-cyanoalanine synthase, partial
           (24%)
          Length = 621

 Score =  151 bits (382), Expect = 1e-37
 Identities = 79/86 (91%), Positives = 82/86 (94%)
 Frame = +2

Query: 267 VMEKVLEVSSEDAVNMARTLALKEGLMVGISSGANTVAALRLASLPENKGKLIVTVHPSF 326
           VM+KVLEVSSEDAV MAR LALKEGLMVGISSGANTVAALRLASLPENKGKLIVT+HPSF
Sbjct: 2   VMDKVLEVSSEDAVKMARILALKEGLMVGISSGANTVAALRLASLPENKGKLIVTIHPSF 181

Query: 327 GERYLSSVLFQDLRTEAENMQPVSVD 352
           GERYLSSVLFQ+LR EAE MQPVSVD
Sbjct: 182 GERYLSSVLFQELRDEAEKMQPVSVD 259


>TC17110 similar to UP|Q9FS26 (Q9FS26) Plastidic cysteine synthase 1,
           partial (28%)
          Length = 657

 Score =  136 bits (342), Expect = 6e-33
 Identities = 65/109 (59%), Positives = 84/109 (76%)
 Frame = +1

Query: 240 VLNGGKPGPHQITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARTLALKEGLMVGISSG 299
           +L GGKPGPH+I G G GF P  LD +V+++V+ +SS++AV  A+ +AL+EGL+VGISSG
Sbjct: 1   ILTGGKPGPHKIQGIGAGFVPGNLDEEVVDEVIAISSDEAVETAKQVALQEGLLVGISSG 180

Query: 300 ANTVAALRLASLPENKGKLIVTVHPSFGERYLSSVLFQDLRTEAENMQP 348
           A   AAL++   PEN GKLI  V PSFGERYLS++LFQ +R E ENMQP
Sbjct: 181 AAAAAALQVGKRPENAGKLIAVVFPSFGERYLSTILFQSIREECENMQP 327


>TC12007 similar to UP|Q8W1A0 (Q8W1A0) Cysteine synthase, partial (34%)
          Length = 592

 Score =  130 bits (328), Expect = 3e-31
 Identities = 65/107 (60%), Positives = 82/107 (75%)
 Frame = +3

Query: 240 VLNGGKPGPHQITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARTLALKEGLMVGISSG 299
           VLNGGKPG H I G G G  P ILD++++++V++VSSE+A+  A+ LALKEGL++GISSG
Sbjct: 3   VLNGGKPGKHLIQGIGAGVIPPILDVNLIDEVIQVSSEEAIETAKMLALKEGLLMGISSG 182

Query: 300 ANTVAALRLASLPENKGKLIVTVHPSFGERYLSSVLFQDLRTEAENM 346
           A   AA+ L   PEN GKLIV + PSFGERYLSS LF+ +R EAE M
Sbjct: 183 AAAAAAITLGKRPENAGKLIVAIFPSFGERYLSSPLFESIRHEAEQM 323


>BP067741 
          Length = 517

 Score =  104 bits (260), Expect = 2e-23
 Identities = 54/93 (58%), Positives = 71/93 (76%)
 Frame = -2

Query: 251 ITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARTLALKEGLMVGISSGANTVAALRLAS 310
           I G G GF P  +D+D++++V++VSSE+AV+ A  LALKEGL+VGISS A   AA++LA 
Sbjct: 516 IQGIGAGFIPGTVDVDILDEVVQVSSEEAVDTATLLALKEGLLVGISSAAAAAAAIKLAR 337

Query: 311 LPENKGKLIVTVHPSFGERYLSSVLFQDLRTEA 343
            P+N GKLI+ V PS GERYLSSVLF+  + EA
Sbjct: 336 RPDNDGKLILVVFPSPGERYLSSVLFEATQREA 238


>TC10541 similar to UP|CYSL_CAPAN (P31300) Cysteine synthase, chloroplast
           precursor  (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL
           B) , partial (25%)
          Length = 568

 Score =  103 bits (258), Expect = 3e-23
 Identities = 54/108 (50%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
 Frame = +3

Query: 2   RRLMTTTATSADSSSFAQRIR-DLPKDLPGTNIKKHVSQLIGRTPLVYLNKVTEGCGAYI 60
           R L TTT  S+ SS   + +    P ++ G NI   V+QLIG+TP+VYLN + +G  A I
Sbjct: 243 RPLSTTTRVSSPSSVVCKAVSVKPPTEIEGLNIADDVTQLIGKTPMVYLNNIVKGSVANI 422

Query: 61  AVKQEMMQPTASIKDRPALAMMEDAEKKNLITPGKTILIEPTSGNMGI 108
           A K E+M+P  S+KDR   +M+ DAE++  ITPGK+IL+EPTSGN GI
Sbjct: 423 AAKLEIMEPCCSVKDRIGYSMITDAEQRGAITPGKSILVEPTSGNTGI 566


>BP063059 
          Length = 480

 Score = 95.9 bits (237), Expect = 9e-21
 Identities = 48/75 (64%), Positives = 59/75 (78%)
 Frame = -3

Query: 272 LEVSSEDAVNMARTLALKEGLMVGISSGANTVAALRLASLPENKGKLIVTVHPSFGERYL 331
           L+VSSE+A+  A+ LALKEGL++GISSGA   AA++L   PEN GKLIV + PSFGERYL
Sbjct: 421 LQVSSEEAIETAKMLALKEGLLMGISSGAAAAAAIKLGKRPENAGKLIVAIFPSFGERYL 242

Query: 332 SSVLFQDLRTEAENM 346
           SS LF+ +R EAE M
Sbjct: 241 SSPLFESIRHEAEPM 197


>BP067639 
          Length = 448

 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 43/71 (60%), Positives = 54/71 (75%)
 Frame = -2

Query: 276 SEDAVNMARTLALKEGLMVGISSGANTVAALRLASLPENKGKLIVTVHPSFGERYLSSVL 335
           SE+AV+ A+ LALKEGL+VGISSGA   AA++LA  P+  G LI+ V PS GER LSSVL
Sbjct: 447 SEEAVDTAKLLALKEGLLVGISSGAAAAAAIKLARRPDPDGGLILVVFPSPGERDLSSVL 268

Query: 336 FQDLRTEAENM 346
           F+  + EAE+M
Sbjct: 267 FEATQREAESM 235


>TC18952 similar to GB|AAD54324.1|5853119|AF177212 threonine
           dehydratase/deaminase {Arabidopsis thaliana;} , partial
           (49%)
          Length = 951

 Score = 71.6 bits (174), Expect = 2e-13
 Identities = 60/198 (30%), Positives = 92/198 (46%)
 Frame = +1

Query: 44  TPLVYLNKVTEGCGAYIAVKQEMMQPTASIKDRPALAMMEDAEKKNLITPGKTILIEPTS 103
           +PL    K++E  G  I +K+E +QP  S K R A  MM    K+ L+  G   +I  ++
Sbjct: 139 SPLQMATKLSERLGVNIWLKREDLQPVFSFKLRGAYNMMAKLPKE-LLEKG---VICSSA 306

Query: 104 GNMGISLAFMAAMKGYKMVLTMPSYTSLERRVCMRAFGAELILTDPTKGMGGTVKKAYDL 163
           GN    +A  A       V+ MP  T   +   +   GA ++L   +     T  K    
Sbjct: 307 GNHAQGVALAAKRLNCSAVIVMPVTTPDIKWKSVEKMGATVVLIGDSYDEAQTYAKKRGK 486

Query: 164 LESTPNAFMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKS 223
            E    AF +  F +P +  +   T G EI     G V    + +G GG ++G+  Y+K 
Sbjct: 487 EEG--RAF-IPPFDHP-DVIMGQGTVGMEIVRQMQGPVHAIFVPVGGGGLIAGIAAYVKR 654

Query: 224 QNPNVKIYGVEPSESNVL 241
            +P VKI GVEPS++N +
Sbjct: 655 VSPQVKIIGVEPSDANAM 708


>BP052652 
          Length = 538

 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 32/55 (58%), Positives = 38/55 (68%)
 Frame = -2

Query: 292 LMVGISSGANTVAALRLASLPENKGKLIVTVHPSFGERYLSSVLFQDLRTEAENM 346
           L+ GISSGA   AAL LA  PEN GKLIV + PSFGERY+S+ LF  +  E + M
Sbjct: 534 LLFGISSGAAAAAALSLARRPENSGKLIVVIFPSFGERYISTPLFNSIYEEVQKM 370


>BP069011 
          Length = 403

 Score = 53.9 bits (128), Expect = 4e-08
 Identities = 31/53 (58%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = -3

Query: 286 LALKEGLMVGISSGANTVAALRLASLPEN-KGKLIVTVHPSFGERYLSSVLFQ 337
           LALKEGL+VGISSGA   AA+      +    KLI+ V P+ GERYLSSVLF+
Sbjct: 401 LALKEGLLVGISSGAAAAAAINACQESQTMMEKLILVVFPAPGERYLSSVLFE 243


>BI420492 
          Length = 579

 Score = 27.3 bits (59), Expect = 4.0
 Identities = 22/59 (37%), Positives = 26/59 (43%), Gaps = 4/59 (6%)
 Frame = +1

Query: 6   TTTATSADSSSFAQRIRDLPK----DLPGTNIKKHVSQLIGRTPLVYLNKVTEGCGAYI 60
           TT AT A +S  A  I         D P T      S LIGR   VY+N   +G G Y+
Sbjct: 157 TTAATVAGNSGTASSILRFGTVAVVDDPVTEGPSIDSALIGRAQGVYINSQLDGKGLYM 333


>TC9630 similar to UP|AAS48063 (AAS48063) NIP3, partial (18%)
          Length = 971

 Score = 26.9 bits (58), Expect = 5.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 293 MVGISSGANTVAALRLASLPENKGKLIVTVHPSF 326
           ++G  SGA    A++L    E+  K++ + HPSF
Sbjct: 288 VLGALSGAGIYTAVKLPDEDEDSAKVVGSNHPSF 389


>BP040546 
          Length = 577

 Score = 26.9 bits (58), Expect = 5.2
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +3

Query: 281 NMARTLALKEGLMVGISSGANTVAALRLASLPENKGKLIVTVHPSFGERYLSSVL 335
           N+    +L  G +V  +    +VAA+ +  L  +K KL V +HPS  ++   SVL
Sbjct: 27  NLVPPPSLPNGNLVAAAPRRYSVAAI-MEGLKVSKSKLTVYLHPSKSKQVSESVL 188


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,459,634
Number of Sequences: 28460
Number of extensions: 48709
Number of successful extensions: 200
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of query: 352
length of database: 4,897,600
effective HSP length: 91
effective length of query: 261
effective length of database: 2,307,740
effective search space: 602320140
effective search space used: 602320140
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)