TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139601.1 - phase: 0 /pseudo
         (2139 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP043794                                                              211  7e-55
TC12492 weakly similar to UP|AAS53933 (AAS53933) AFR562Cp, parti...   128  1e-29
TC11839 similar to UP|STH1_YEAST (P32597) Nuclear protein STH1/N...    79  1e-14
TC18062 similar to UP|Q7Y244 (Q7Y244) Fiber protein Fb22 (Fragme...    77  4e-14
BU494199                                                               51  4e-10
BP044543                                                               57  3e-08
TC12145 similar to UP|Q9ZVP6 (Q9ZVP6) T7A14.1 protein (Fragment)...    57  3e-08
BP047121                                                               43  6e-04
TC12209 similar to UP|O60177 (O60177) DEAD box helicase, partial...    42  0.001
TC12051                                                                34  0.21
TC15353 weakly similar to UP|AAQ81937 (AAQ81937) SCC3, partial (7%)    34  0.27
TC9788 similar to PIR|T47605|T47605 RING finger-like protein - A...    34  0.27
TC10209 similar to UP|Q9SJQ5 (Q9SJQ5) At2g36500 protein, partial...    33  0.46
TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacety...    32  1.0
TC13011 similar to UP|Q9JM93 (Q9JM93) SRp25 nuclear protein, par...    32  1.0
TC8003 homologue to PIR|S52023|S52023 translation initiation fac...    32  1.0
AV427645                                                               32  1.4
TC19505 weakly similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, par...    31  1.8
TC14037 similar to UP|O81698 (O81698) Proline-rich protein, part...    31  1.8
TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eI...    31  2.3

>BP043794 
          Length = 490

 Score =  211 bits (538), Expect = 7e-55
 Identities = 110/161 (68%), Positives = 125/161 (77%)
 Frame = +2

Query: 1829 NLRGSSAHVTNMTEIIQRRCKSVISKLQRRIDKEGHQIVPLLTDLWKRIENSGFAGGSGN 1888
            NL GSS   T MTEIIQR CK+VISKLQRRIDK+G Q+VPLLT   KRIENSG+  GSG 
Sbjct: 2    NLSGSSTRTTKMTEIIQRGCKNVISKLQRRIDKDGQQVVPLLTAFLKRIENSGYTAGSGK 181

Query: 1889 NLLDLRKIDQRINRLEYSGVMEFVFDVQFMLKSAMQFYGYSYEVRTEARKVHDLFFDILK 1948
             LLDLRKIDQRI+RLEY+GVME V DVQFML+SAM  YGYS EV  EA +VH+LFFDILK
Sbjct: 182  TLLDLRKIDQRIDRLEYNGVMELVSDVQFMLRSAMHSYGYSEEVNNEADRVHNLFFDILK 361

Query: 1949 TTFSDIDFGEAKSALSFTSQISANAGASSKQATVFPSKRKR 1989
              F ++DF EA++ LS   Q+SA+A AS  Q TV PSKR R
Sbjct: 362  IAFPNVDFREARNGLSSPPQVSASAVASPXQVTVGPSKRNR 484


>TC12492 weakly similar to UP|AAS53933 (AAS53933) AFR562Cp, partial (7%)
          Length = 922

 Score =  128 bits (321), Expect = 1e-29
 Identities = 59/94 (62%), Positives = 74/94 (77%)
 Frame = +1

Query: 877 KYYNLAHAVNEKVLRQPSMLRAGTLREYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 936
           +Y +  H++ EKV  QPS+L+ G LR YQ+ GLQWMLSL+NN LNGILADEMGLGKT+Q 
Sbjct: 586 QYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQT 765

Query: 937 MALIAYLMEFKGNYGPHLIIVPNAVLVNWKCAFN 970
           ++LIA+LME+KG  GPHLI+ P AVL NW   F+
Sbjct: 766 ISLIAHLMEYKGVTGPHLIVAPKAVLPNWMNEFS 867


>TC11839 similar to UP|STH1_YEAST (P32597) Nuclear protein STH1/NPS1, partial
            (4%)
          Length = 519

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 37/79 (46%), Positives = 56/79 (70%)
 Frame = +2

Query: 1038 QNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEDPNQNAENDWLETEKKVIIIHRLH 1097
            +N L+ELW+LLN LLP +F++ + F+ WF+KPF+    N +A+   L  E+ ++II+RLH
Sbjct: 212  KNSLEELWALLNFLLPNIFNSSEDFSQWFNKPFESSGDN-SADEALLSEEENLLIINRLH 388

Query: 1098 QILEPFMLRRRVEEVEGSL 1116
            Q+L PF+LRR   +V  SL
Sbjct: 389  QVLRPFVLRRLKHKVLISL 445


>TC18062 similar to UP|Q7Y244 (Q7Y244) Fiber protein Fb22 (Fragment), partial
            (29%)
          Length = 621

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 45/88 (51%), Positives = 52/88 (58%), Gaps = 15/88 (17%)
 Frame = -3

Query: 2067 KSSVKHRIGSAGPVSPPKIVVHTVLAERSPTPGSGSTPR-----------AGH----AHT 2111
            KS VK R GS+GPVSPP       +     +P SGS PR           AG     +  
Sbjct: 619  KSLVKTRTGSSGPVSPPS------MGPAIKSPRSGSNPRDSRPVQQAAQAAGRVGQPSQQ 458

Query: 2112 SNGSGGSVGWANPVKRMRTDSGKRRPSH 2139
             NGSGGS+GWANPVKR+R+DSGKRRPSH
Sbjct: 457  PNGSGGSLGWANPVKRLRSDSGKRRPSH 374


>BU494199 
          Length = 570

 Score = 50.8 bits (120), Expect(2) = 4e-10
 Identities = 33/80 (41%), Positives = 44/80 (54%), Gaps = 4/80 (5%)
 Frame = +1

Query: 1221 HRVLLFSTMTKLLDILEEYL---QWRRLVYRRIDGTTALEDRESAIVDFNS-PNSDCFIF 1276
            HRVL+F+     LDI+E  L     + + Y R+DG+   E R   +  FNS P  D  + 
Sbjct: 190  HRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFEIVKAFNSDPTID--VL 363

Query: 1277 LLSIRAAGRGLNLQSADTVV 1296
            LL+    G GLNL SADT+V
Sbjct: 364  LLTTHVGGLGLNLTSADTLV 423



 Score = 32.3 bits (72), Expect(2) = 4e-10
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 1301 DPNPKNEEQAVARAHRIGQKREVKV 1325
            D NP  + QA+ RAHR+GQK+ V V
Sbjct: 437  DWNPMRDHQAMDRAHRLGQKKVVNV 511


>BP044543 
          Length = 418

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 25/34 (73%), Positives = 26/34 (75%)
 Frame = -3

Query: 2106 AGHAHTSNGSGGSVGWANPVKRMRTDSGKRRPSH 2139
            AG     NGSGG VGW  PVKR+RTDSGKRRPSH
Sbjct: 347  AGRQSQPNGSGGPVGWQTPVKRLRTDSGKRRPSH 246


>TC12145 similar to UP|Q9ZVP6 (Q9ZVP6) T7A14.1 protein (Fragment), partial
            (76%)
          Length = 664

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 40/93 (43%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
 Frame = +2

Query: 1261 SAIVDFNSPNSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQK 1320
            +AI  FN  + DC  FLLS++AAG  LNL  A  V + +P  NP  E+QA  R HRIGQ 
Sbjct: 8    AAIKRFND-DPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQN 184

Query: 1321 ---REVKVIYMEAVVDKISSHQKEDEMRIGGTI 1350
               R VK I    V ++I   Q++ E    G I
Sbjct: 185  KPIRVVKFITENTVEERILELQQKKEAVSEGLI 283


>BP047121 
          Length = 525

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
 Frame = -1

Query: 1095 RLHQILEPFMLRRRVEEVEGSLPPKVS-----IVLRCRMSAFQSAIYDWIKSTGTLRLNP 1149
            R+  IL PF+LRR   +V   L PK+      ++ + + SA++ AI ++ ++    R+  
Sbjct: 525  RMKSILGPFILRRLKSDVMQQLVPKIQQVEYVVMEKQQESAYKEAIEEY-RAVSQARM-- 355

Query: 1150 EEEQSRMEKSPLYQAKQYKTLNNRCMELRKTCNHPLLNYPFFSD 1193
              + S +  + + +    + +NN  ++ RK  NHPLL    +SD
Sbjct: 354  -AKCSELNSNNVLEVLPRRQINNYFVQFRKIANHPLLIRRIYSD 226


>TC12209 similar to UP|O60177 (O60177) DEAD box helicase, partial (6%)
          Length = 550

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/80 (31%), Positives = 43/80 (53%)
 Frame = +1

Query: 1003 IIFSTQRMKDRESVLARDLDRYRCHRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAF 1062
            I+   Q +K++ +  AR     +   R  LTGTP+ N++ EL+SL++ L  + ++  K F
Sbjct: 289  ILDEAQCIKNKSTGAARACCTLQAIYRFCLTGTPMMNNVGELYSLIHFLRIKPYNEWKRF 468

Query: 1063 NDWFSKPFQKEDPNQNAEND 1082
             D F     K DP+++   D
Sbjct: 469  QDSFG-CLTKPDPSRSRRRD 525


>TC12051 
          Length = 629

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +3

Query: 1698 EGEEEQVLQKPKIKRK--RSLRVRPRHTMEKPEDKSGSEMASLQRGQSFLLPDKKYPLQS 1755
            E +   V ++ K +RK  +++  RP +T EKP+D SG++        +  LPD    +Q 
Sbjct: 159  ENKARVVREEKKRRRKWAQNITPRPSNTREKPQDISGTKPQQEPNTAAGFLPDN--IVQM 332

Query: 1756 RINQESKTFGDSSSNKHDKNEPILKNKR 1783
               QE + F   S  + D  +P    K+
Sbjct: 333  LAAQEKQVFLSDSDEEKDGVKPTNSKKK 416


>TC15353 weakly similar to UP|AAQ81937 (AAQ81937) SCC3, partial (7%)
          Length = 528

 Score = 33.9 bits (76), Expect = 0.27
 Identities = 21/54 (38%), Positives = 28/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 1496 DSTEIGSERRRGRPKGKKN-PSYKELEDSSEEISEDRNEDSAHDEGEIGEFEDD 1548
            D  E  S RRRGRP+ ++N P+ K  +D S    ED    S  D G   E ++D
Sbjct: 64   DEKEGVSIRRRGRPRKRQNIPAKKLFDDQSSSEDEDSISASEQDGGRQEEDDED 225


>TC9788 similar to PIR|T47605|T47605 RING finger-like protein - Arabidopsis
            thaliana {Arabidopsis thaliana;}, partial (6%)
          Length = 696

 Score = 33.9 bits (76), Expect = 0.27
 Identities = 27/97 (27%), Positives = 47/97 (47%), Gaps = 7/97 (7%)
 Frame = +2

Query: 1270 NSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKR--EVKVIY 1327
            +S C + L+   AA   L+L     V + +P  +   EEQ ++RAHR+G  R   V+ + 
Sbjct: 20   DSSCMVLLMDGSAA-LVLDLSFVSHVFLMEPIWDRSLEEQVISRAHRMGASRPIHVETLA 196

Query: 1328 MEAVVDK--ISSHQKEDEMR---IGGTIDMEDELAGK 1359
            M   +++  +   Q  D+ R   I   +  ED+  G+
Sbjct: 197  MRGTIEEQMLEFLQDADKCRRSPIKDAVKSEDDSGGR 307


>TC10209 similar to UP|Q9SJQ5 (Q9SJQ5) At2g36500 protein, partial (26%)
          Length = 659

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +1

Query: 308 QQSSANKSLGADSSLNAKASSSRSDPEPAKMQYVR--QLSQHASLDGGST 355
           QQ S+ KSL A++  NAKASS  S P+    + V+  +LS+  ++  G+T
Sbjct: 178 QQRSSKKSLPAENGTNAKASSPPSQPDEGGERTVKKLRLSKALTIPEGTT 327


>TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacetylase 1 (HD1),
            partial (5%)
          Length = 636

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 17/57 (29%), Positives = 30/57 (51%)
 Frame = +3

Query: 1410 DEERCQETVHDVPSLQEVNRMIARNEEEVELFDQMDEEEDWLEEMTRYDQVPDWIRA 1466
            +EE+  E   + P  +E  +   + EEE +  D+  EEE   E+  + D V +W++A
Sbjct: 69   EEEKKDEPKSEEPQKEEAKKEEPKKEEEKK--DEKKEEEKKKEQPAQIDPVLEWVKA 233


>TC13011 similar to UP|Q9JM93 (Q9JM93) SRp25 nuclear protein, partial (10%)
          Length = 593

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 40/158 (25%), Positives = 59/158 (37%), Gaps = 1/158 (0%)
 Frame = -3

Query: 1480 KRPSKKNALSGGNVVLDSTEIGSERRRGRPKGKKNPSYKELEDSSEEISEDRNEDSAHDE 1539
            K+P+KK A                 ++G    KK    KE  DS EE  ED  E+S H E
Sbjct: 585  KKPAKKGA-----------------KKGADHSKKRKKAKEPSDSEEEEEEDA-EESDHSE 460

Query: 1540 GEI-GEFEDDGYSGAGIAQPVDKDKLDDVTPSDAEYECPRSSSESARNNNVVEGGSSASS 1598
             E+ GE E     G               T      + P+ S    + +    GG++A++
Sbjct: 459  DEVNGEAEVKRSRGG-------------KTSGKGRGKAPKKSGAEVKGSGRGRGGAAAAA 319

Query: 1599 AGVQRLTQAVSPSVSSQKFASLSALDAKPSSISKKMVH 1636
                   +  SP  SS     L  L + P   S+ ++H
Sbjct: 318  NKSGSSGKRGSPRKSS*LSFLLEILFSTPRE-SQHVIH 208


>TC8003 homologue to PIR|S52023|S52023 translation initiation factor
            eIF-4A.14 - common tobacco {Nicotiana tabacum;} , partial
            (34%)
          Length = 708

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 22/97 (22%), Positives = 43/97 (43%)
 Frame = +1

Query: 1224 LLFSTMTKLLDILEEYLQWRRLVYRRIDGTTALEDRESAIVDFNSPNSDCFIFLLSIRAA 1283
            ++F    + +D L + ++ R        G      R+  + +F S +S     L++    
Sbjct: 25   VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV---LITTDLL 195

Query: 1284 GRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQK 1320
             RG+++Q    V+ YD    P+N    + R+ R G+K
Sbjct: 196  ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK 306


>AV427645 
          Length = 403

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 19/56 (33%), Positives = 24/56 (41%), Gaps = 7/56 (12%)
 Frame = +1

Query: 1532 NEDSAHDEGEIGEFEDDGYSGAGIAQPVD-----KDKLDDVTPSD--AEYECPRSS 1580
            +ED  HD  ++  F+DD YSG     P+D      D  DD        E  CP  S
Sbjct: 202  SEDDMHDANDVESFDDDFYSGDAEEAPLDYYSDYDDDADDYFDDSDRIESRCPEVS 369


>TC19505 weakly similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, partial (12%)
          Length = 723

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 40/137 (29%), Positives = 52/137 (37%), Gaps = 17/137 (12%)
 Frame = +1

Query: 315 SLGADSSLNAKASSSRSDPE-PAKMQYVRQLSQHASLDG------------GSTKEVGSG 361
           S  A SS  ++ASS  S+PE P ++      S   SL              GS       
Sbjct: 265 SAAATSSPTSEASSQSSNPEKPLRLPMFLCSSSSLSLFS*LFPLLLTLHLPGSPTSSPPP 444

Query: 362 NYAKPQGGPSQMPQKLNGF----TKNQLHVLKAQILAFRRLKKGDGILPQELLEAISPPP 417
               P   P  +P  LN      T +   +L  QIL  RR    D  L   LL  + P P
Sbjct: 445 PPPPPPPPPPPVPLNLNCLPFSPTFSLTPLLHPQILHRRRATVLD--LAMLLLHLLIPKP 618

Query: 418 LDLHVQQPIHSAGAQNQ 434
              H QQP+H    ++Q
Sbjct: 619 AQKHWQQPLHKTKLRDQ 669


>TC14037 similar to UP|O81698 (O81698) Proline-rich protein, partial (25%)
          Length = 465

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +2

Query: 298 GVNGMPSMHPQQSSANKSLGADSSLNAKASSSRSDPEPAKMQYVRQLSQHASLDGGSTKE 357
           GVNG P  + ++S+    +  + S   ++++S +DP P    YV Q +   +   G+   
Sbjct: 50  GVNGEPRRNVKESALRYHVSDEESHRTESTTSEADPHPE--PYVNQSAFPGTNYAGNGAI 223

Query: 358 VGSGNYAKPQGGPSQ 372
             SG+ +   G   Q
Sbjct: 224 TSSGSKSSADGSTEQ 268


>TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eIF4A-15,
            complete
          Length = 1563

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 29/127 (22%), Positives = 53/127 (40%), Gaps = 2/127 (1%)
 Frame = +2

Query: 1196 KDFMVKCCGKLWMLDRI--LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGT 1253
            K F V    + W L+ +  L +       V+  +T  K+ D L + ++          G 
Sbjct: 848  KQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV-DWLTDKMRSNDHTVSATHGD 1024

Query: 1254 TALEDRESAIVDFNSPNSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVAR 1313
                 R+  + +F S +S     L++     RG+++Q    V+ YD    P+N    + R
Sbjct: 1025 MDQNTRDIIMREFRSGSSRV---LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 1195

Query: 1314 AHRIGQK 1320
            + R G+K
Sbjct: 1196 SGRFGRK 1216


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,973,753
Number of Sequences: 28460
Number of extensions: 403913
Number of successful extensions: 1904
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 1853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1892
length of query: 2139
length of database: 4,897,600
effective HSP length: 105
effective length of query: 2034
effective length of database: 1,909,300
effective search space: 3883516200
effective search space used: 3883516200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)