BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139600.2 + phase: 0
(98 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b bindi... 194 3e-51
TC7794 homologue to UP|Q9M600 (Q9M600) Chlorophyll a/b binding p... 191 1e-50
TC14091 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding ... 176 4e-46
TC7803 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyl... 141 2e-35
BP048304 140 3e-35
TC12237 homologue to UP|CB23_LYCES (P27489) Chlorophyll a-b bind... 134 2e-33
AV773542 72 2e-28
AV774181 95 2e-21
TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein,... 91 4e-20
TC8043 similar to PIR|S00443|S00443 chlorophyll a/b-binding prot... 81 3e-17
AV779517 81 3e-17
TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding pro... 79 1e-16
AV772907 75 8e-16
TC13818 similar to UP|Q9C639 (Q9C639) Light-harvesting complex p... 74 4e-15
AV774664 60 1e-13
TC10031 similar to UP|Q43382 (Q43382) PSI type II chlorophyll a/... 67 4e-13
TC8263 homologue to UP|Q41038 (Q41038) Type II chlorophyll a/b b... 67 7e-13
TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding ... 66 9e-13
TC7801 similar to UP|Q8VX01 (Q8VX01) Casein kinase II alpha subu... 64 3e-12
BP053824 62 2e-11
>TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b binding protein
3C, chloroplast precursor (LHCII type I CAB-3C) (LHCP),
partial (97%)
Length = 1058
Score = 194 bits (492), Expect = 3e-51
Identities = 93/98 (94%), Positives = 95/98 (96%)
Frame = +2
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 557 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 736
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWAFATNFVPGK
Sbjct: 737 FVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 850
>TC7794 homologue to UP|Q9M600 (Q9M600) Chlorophyll a/b binding protein
precursor, partial (97%)
Length = 2581
Score = 191 bits (486), Expect = 1e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = +1
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 898 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 1077
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH++DPVN+NAWA+ATNFVPGK
Sbjct: 1078FVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 1191
Score = 107 bits (266), Expect = 4e-25
Identities = 53/86 (61%), Positives = 64/86 (73%)
Frame = +1
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
+G E YRI +G + D L+PGG FDPLGLA DP+ A LKVKE+KNGRLAMFSM GF
Sbjct: 2065 LGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGF 2238
Query: 61 FVQAIVTEKGPLENLADHIADPVNSN 86
F+QA VT GP+ENLA H++DP +N
Sbjct: 2239 FIQAYVTGDGPVENLAKHLSDPFGNN 2316
>TC14091 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein
type II, complete
Length = 1116
Score = 176 bits (447), Expect = 4e-46
Identities = 81/98 (82%), Positives = 91/98 (92%)
Frame = +2
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MG +EGYR+ GPLGE +DPLYPGG+FDPLGLADDP+AFAELKVKELKNGRLAMFSMFGF
Sbjct: 560 MGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGF 739
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGP++NL DH+ADPV +NAWAFATNFVPG+
Sbjct: 740 FVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 853
>TC7803 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyll a/b
binding protein, complete
Length = 1178
Score = 141 bits (355), Expect = 2e-35
Identities = 72/98 (73%), Positives = 78/98 (79%), Gaps = 1/98 (1%)
Frame = +1
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 59
MG VEG+RI P + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFG
Sbjct: 679 MGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFG 858
Query: 60 FFVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPG 97
FFVQAIVT KGPLENL DH+ DPV +NAW +AT FVPG
Sbjct: 859 FFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPG 972
Score = 33.1 bits (74), Expect = 0.008
Identities = 17/39 (43%), Positives = 24/39 (60%), Gaps = 1/39 (2%)
Frame = +1
Query: 22 YPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 59
+PG +D GL+ DPEAFA+ + E+ +GR AM G
Sbjct: 391 FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 507
>BP048304
Length = 398
Score = 140 bits (354), Expect = 3e-35
Identities = 67/83 (80%), Positives = 75/83 (89%)
Frame = -3
Query: 16 EVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPLENL 75
EV DPLYPGGSFDPLG ADDPEAFAEL VK L+NGRLA+FSMFGFFVQAIVT KGPLE+L
Sbjct: 396 EVTDPLYPGGSFDPLGPADDPEAFAEL*VKGLQNGRLALFSMFGFFVQAIVTRKGPLEDL 217
Query: 76 ADHIADPVNSNAWAFATNFVPGK 98
ADH++DPV +AWA+A +FVPGK
Sbjct: 216 ADHLSDPVYYHAWAYAPHFVPGK 148
>TC12237 homologue to UP|CB23_LYCES (P27489) Chlorophyll a-b binding protein
13, chloroplast precursor (LHCII type III CAB-13),
partial (43%)
Length = 615
Score = 134 bits (338), Expect = 2e-33
Identities = 70/98 (71%), Positives = 77/98 (78%), Gaps = 1/98 (1%)
Frame = +3
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 59
MG VEG+RI P + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFG
Sbjct: 48 MGLVEGFRINGLPGVGEGNNLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 227
Query: 60 FFVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPG 97
FFVQAIVT KGPLENL D + DPV ++AW +AT FVPG
Sbjct: 228 FFVQAIVTGKGPLENLLDPLDDPVANHAWVYATQFVPG 341
>AV773542
Length = 434
Score = 71.6 bits (174), Expect(3) = 2e-28
Identities = 33/43 (76%), Positives = 40/43 (92%)
Frame = -3
Query: 36 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPLENLADH 78
P+AFAELKVKEL +GRLAMFS+FGFFVQA+VT +GP++NL DH
Sbjct: 342 PDAFAELKVKEL*SGRLAMFSLFGFFVQALVTGQGPIQNLYDH 214
Score = 55.8 bits (133), Expect(3) = 2e-28
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -2
Query: 6 GYRIADGPLGEVVDPLYPGGSFDPLGLADDP 36
GYR+ GPL E +DPLYPGG+FDPL LADDP
Sbjct: 433 GYRLGGGPLAEGLDPLYPGGAFDPLALADDP 341
Score = 32.0 bits (71), Expect(3) = 2e-28
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -1
Query: 79 IADPVNSNAWAFATNFVPG 97
++DPV +AWAFA +FVPG
Sbjct: 212 VSDPVAHHAWAFAPHFVPG 156
>AV774181
Length = 441
Score = 95.1 bits (235), Expect = 2e-21
Identities = 47/54 (87%), Positives = 48/54 (88%)
Frame = -3
Query: 20 PLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPLE 73
P PGGSFDPL LADDPEAFAELKVK LKNGRLAMFS+FGFFV AIVT KGPLE
Sbjct: 430 PSTPGGSFDPLALADDPEAFAELKVKGLKNGRLAMFSIFGFFVPAIVTGKGPLE 269
Score = 24.6 bits (52), Expect = 2.9
Identities = 21/79 (26%), Positives = 31/79 (38%), Gaps = 2/79 (2%)
Frame = -2
Query: 17 VVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPL-ENL 75
V DPLYP PLG P F + + ++ + KG + L
Sbjct: 440 VTDPLYPRWQL*PLGPC**PRGFC*A*SEGTQEWKVGHVLYLWILCSSYCDRKGAFGDTL 261
Query: 76 ADHIADPV-NSNAWAFATN 93
D + P +AWA+AT+
Sbjct: 260 HDTLF*PTFTYHAWAYATH 204
>TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein, complete
Length = 1268
Score = 90.5 bits (223), Expect = 4e-20
Identities = 42/74 (56%), Positives = 55/74 (73%), Gaps = 1/74 (1%)
Frame = +1
Query: 14 LGEVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPL 72
LG DP YPGG F +PLG D ++ ELK+KE+KNGRLAM ++ G+F+Q +VT GP
Sbjct: 799 LGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPY 978
Query: 73 ENLADHIADPVNSN 86
+NL DH+ADPVN+N
Sbjct: 979 QNLLDHLADPVNNN 1020
Score = 28.5 bits (62), Expect = 0.20
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = +1
Query: 18 VDPLYPGG-SFDPLGLADDPE---AFAE---LKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+D PG FDPLGL+ DPE F E L E+ NGR AM G I+ + G
Sbjct: 421 LDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAG 597
>TC8043 similar to PIR|S00443|S00443 chlorophyll a/b-binding protein type I
precursor (cab-6A) - tomato {Lycopersicon
esculentum;}, partial (97%)
Length = 979
Score = 80.9 bits (198), Expect = 3e-17
Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Frame = +1
Query: 22 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTEKGPLENLADHIA 80
YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ GPLENLA H+A
Sbjct: 541 YPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 720
Query: 81 DPVNSN 86
DP ++N
Sbjct: 721 DPWHNN 738
>AV779517
Length = 514
Score = 80.9 bits (198), Expect = 3e-17
Identities = 47/82 (57%), Positives = 55/82 (66%)
Frame = -3
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
+G E YRI G LG D L+ GG FDP GLA DP+ A LKVK ++N RLAMFSM G
Sbjct: 455 LGGAEYYRITYG-LG-FEDQLHSGGPFDPCGLAKDPDPAALLKVKGIQNRRLAMFSMPGC 282
Query: 61 FVQAIVTEKGPLENLADHIADP 82
F+ A VT GP+ENLA H+ DP
Sbjct: 281 FIPA*VTGDGPVENLALHLRDP 216
>TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding protein CP29,
complete
Length = 1116
Score = 79.0 bits (193), Expect = 1e-16
Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Frame = +1
Query: 21 LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPLENLADHI 79
LYPGGSF DPLGLA DPE A L++ E+K+ RLAM + GF VQA T KGPL+N A H+
Sbjct: 700 LYPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLDNWATHL 879
Query: 80 ADPVNS 85
+DP+++
Sbjct: 880 SDPLHT 897
>AV772907
Length = 471
Score = 74.7 bits (182), Expect(2) = 8e-16
Identities = 40/52 (76%), Positives = 43/52 (81%), Gaps = 1/52 (1%)
Frame = -1
Query: 33 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPL-ENLADHIADPV 83
ADDPEAFAELKVKELKNGRLAMFS+ GFFV AIVT KGPL E ++DPV
Sbjct: 471 ADDPEAFAELKVKELKNGRLAMFSISGFFVLAIVTGKGPLDEPCTTTLSDPV 316
Score = 21.9 bits (45), Expect(2) = 8e-16
Identities = 7/9 (77%), Positives = 9/9 (99%)
Frame = -3
Query: 88 WAFATNFVP 96
WA+AT+FVP
Sbjct: 301 WAYATHFVP 275
>TC13818 similar to UP|Q9C639 (Q9C639) Light-harvesting complex protein
(At1g45474/F2G19.4), partial (38%)
Length = 510
Score = 73.9 bits (180), Expect = 4e-15
Identities = 36/68 (52%), Positives = 50/68 (72%), Gaps = 1/68 (1%)
Frame = +3
Query: 16 EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPLEN 74
E ++P YPGG +PLGLA D + E K+KE+KNGRLAM ++ G FVQA VT GP++N
Sbjct: 48 EGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGPIDN 227
Query: 75 LADHIADP 82
L +H+++P
Sbjct: 228 LVEHLSNP 251
>AV774664
Length = 405
Score = 60.5 bits (145), Expect(2) = 1e-13
Identities = 30/54 (55%), Positives = 37/54 (67%)
Frame = -3
Query: 45 KELKNGRLAMFSMFGFFVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
++ KNGRLAMFSM GFF+QA VT GP+ENLA HI+DP + +PGK
Sbjct: 322 RKSKNGRLAMFSMLGFFIQAYVTGDGPVENLAIHISDPFG----YYLLTVIPGK 173
Score = 28.9 bits (63), Expect(2) = 1e-13
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 19 DPLYPGGSFDPLGLADDP 36
D L+P G FDP+G A DP
Sbjct: 402 DKLHPAGPFDPVGRAKDP 349
>TC10031 similar to UP|Q43382 (Q43382) PSI type II chlorophyll a/b-binding
protein, partial (34%)
Length = 604
Score = 67.4 bits (163), Expect = 4e-13
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Frame = +1
Query: 22 YPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPLENLADHI 79
YPGG FDP+ PE L+ KE+KNGRLAM + GF+ QAI T +GP+ENL H+
Sbjct: 52 YPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHL 231
Query: 80 ADPVNSNAWAFATN 93
ADP + N ++ T+
Sbjct: 232 ADPGHCNIFSAFTS 273
>TC8263 homologue to UP|Q41038 (Q41038) Type II chlorophyll a/b binding
protein from photosystem I precursor, partial (98%)
Length = 1199
Score = 66.6 bits (161), Expect = 7e-13
Identities = 35/73 (47%), Positives = 47/73 (63%), Gaps = 2/73 (2%)
Frame = +3
Query: 22 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPLENLADHI 79
YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I T GP++NL H+
Sbjct: 660 YPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHL 839
Query: 80 ADPVNSNAWAFAT 92
ADP ++ +A T
Sbjct: 840 ADPGHATVFAAFT 878
Score = 35.8 bits (81), Expect = 0.001
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 18 VDPLYPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPL 72
+D PG FDPLGL+ DPE+ EL + R AM G F+ +T+ G L
Sbjct: 306 LDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGIL 473
>TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding protein
(cab-11), complete
Length = 1025
Score = 66.2 bits (160), Expect = 9e-13
Identities = 34/61 (55%), Positives = 39/61 (63%)
Frame = +2
Query: 22 YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPLENLADHIAD 81
YPGG F+PL A EA K KEL NGRLAM + GF VQ VT KGP +NL H++D
Sbjct: 599 YPGGIFNPLNFAPTEEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSD 766
Query: 82 P 82
P
Sbjct: 767 P 769
Score = 38.9 bits (89), Expect = 1e-04
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +2
Query: 17 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKG 70
+ P Y GS FDPL LA+DPE EL NGR AM + G + ++T G
Sbjct: 227 LASPNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVLTNIG 406
>TC7801 similar to UP|Q8VX01 (Q8VX01) Casein kinase II alpha subunit
precursor , partial (28%)
Length = 591
Score = 64.3 bits (155), Expect = 3e-12
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +1
Query: 13 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKV 44
P GEV DPLYPGGSFDPLGLADDP+AFAELKV
Sbjct: 496 PPGEVTDPLYPGGSFDPLGLADDPKAFAELKV 591
>BP053824
Length = 395
Score = 62.0 bits (149), Expect = 2e-11
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = -1
Query: 19 DPLYPGGSFDPLGLADDPEAFAELKVKEL 47
DPLYPGGSFDPLGLADDPEAF ELKVKEL
Sbjct: 392 DPLYPGGSFDPLGLADDPEAFPELKVKEL 306
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.141 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,170,806
Number of Sequences: 28460
Number of extensions: 9895
Number of successful extensions: 99
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of query: 98
length of database: 4,897,600
effective HSP length: 74
effective length of query: 24
effective length of database: 2,791,560
effective search space: 66997440
effective search space used: 66997440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)
Medicago: description of AC139600.2