BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139600.10 + phase: 0
(81 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10876 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22... 120 4e-29
TC10364 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, pa... 80 9e-17
BP039880 74 4e-15
TC16562 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22... 72 2e-14
BP039415 70 5e-14
BP067144 65 3e-12
TC19970 similar to UP|Q8W508 (Q8W508) Histone deacetylase, parti... 28 0.23
TC13676 weakly similar to UP|O80500 (O80500) At2g44600 protein (... 27 0.52
BP031854 27 0.88
TC19937 weakly similar to GB|AAL87371.1|19548015|AY081718 AT4g33... 25 2.0
AV415837 25 2.6
TC20112 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 25 2.6
BP032030 25 3.3
TC12205 25 3.3
TC16991 similar to GB|AAN73306.1|25141223|BT002309 At3g51670/T18... 24 4.4
TC15261 weakly similar to UP|Q9ZQ55 (Q9ZQ55) At2g22570 protein, ... 24 5.7
AU251865 24 5.7
BP052710 23 7.4
TC10938 weakly similar to GB|AAB60293.1|887785|ATU23794 ILR1 {Ar... 23 7.4
AV772687 23 7.4
>TC10876 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22K18_140
{Arabidopsis thaliana;}, partial (23%)
Length = 689
Score = 120 bits (301), Expect = 4e-29
Identities = 65/83 (78%), Positives = 69/83 (82%), Gaps = 9/83 (10%)
Frame = +2
Query: 2 RKRQVVVRRSEDPQRSV--VKYGECQKNHAANVGGYAVDGCREFMPS----TNGSLTCAA 55
RKRQVVVRR EDPQR+V VKYGECQKNHAANVGGYAVDGCREFM S T+ SL CAA
Sbjct: 17 RKRQVVVRR-EDPQRNVRSVKYGECQKNHAANVGGYAVDGCREFMASGEEGTSDSLACAA 193
Query: 56 CGCHRNFHKREVEV---VSESSS 75
CGCHRNFHK+EV+ VSESSS
Sbjct: 194CGCHRNFHKKEVQTEGSVSESSS 262
>TC10364 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, partial (14%)
Length = 1117
Score = 79.7 bits (195), Expect = 9e-17
Identities = 34/67 (50%), Positives = 44/67 (64%), Gaps = 2/67 (2%)
Frame = +1
Query: 4 RQVVVRRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPST--NGSLTCAACGCHRN 61
R ++ P V Y EC +NHAA++G +A+DGC EFMPS LTCAACGCHRN
Sbjct: 49 RHLITATPSPPSTVAVSYKECLRNHAASLGAHALDGCGEFMPSAEPRSQLTCAACGCHRN 228
Query: 62 FHKREVE 68
FH+R+ +
Sbjct: 229 FHRRDTK 249
>BP039880
Length = 576
Score = 74.3 bits (181), Expect = 4e-15
Identities = 32/55 (58%), Positives = 42/55 (76%), Gaps = 4/55 (7%)
Frame = +3
Query: 18 VVKYGECQKNHAANVGGYAVDGCREFMPS----TNGSLTCAACGCHRNFHKREVE 68
VV+Y ECQKNHA + GG+AVDGC EFM + T ++ CAAC CHRNFH++E++
Sbjct: 249 VVRYRECQKNHAVSFGGHAVDGCCEFMAAGDEGTLEAVICAACNCHRNFHRKEID 413
>TC16562 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22K18_140
{Arabidopsis thaliana;}, partial (29%)
Length = 621
Score = 71.6 bits (174), Expect = 2e-14
Identities = 33/64 (51%), Positives = 43/64 (66%), Gaps = 6/64 (9%)
Frame = +3
Query: 19 VKYGECQKNHAANVGGYAVDGCREFMPS----TNGSLTCAACGCHRNFHKREV--EVVSE 72
V+Y ECQKNHA +GG+AVDGC EF+ + T ++ CAAC CHRNFH++E E+ S
Sbjct: 348 VRYRECQKNHAVGIGGHAVDGCCEFLAAGQEGTLEAVICAACNCHRNFHRKETGGEITSY 527
Query: 73 SSSP 76
P
Sbjct: 528 QPRP 539
>BP039415
Length = 449
Score = 70.5 bits (171), Expect = 5e-14
Identities = 34/65 (52%), Positives = 43/65 (65%), Gaps = 4/65 (6%)
Frame = +2
Query: 20 KYGECQKNHAANVGGYAVDGCREFMPS----TNGSLTCAACGCHRNFHKREVEVVSESSS 75
+Y EC KNHA +GG+A+DGC EFMP+ T +L CAAC HRNFH+RE + S+S
Sbjct: 242 RYRECLKNHAVGIGGHALDGCGEFMPAGSEGTLDALKCAACNWHRNFHRREND---SSNS 412
Query: 76 PHSNG 80
P G
Sbjct: 413 PGDGG 427
>BP067144
Length = 492
Score = 64.7 bits (156), Expect = 3e-12
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Frame = -2
Query: 1 MRKRQVVVRRSED---PQRSVVKYGECQKNHAANVGGYAVDGCREFMPSTNG--SLTCAA 55
MRK +V R ++ R++V+Y CQKN++ + G DGC+ FMPS G ++TCAA
Sbjct: 464 MRKNKVXETRRQELAIVSRTIVQYLVCQKNYSVDQGPPIFDGCQ*FMPSGEGVVAMTCAA 285
Query: 56 CGCHRNFHKREVEV---VSESSSPHSNGT 81
CGC +HK+ V V + ++ H + T
Sbjct: 284 CGCQMEYHKKHVHVEVNLGDNGCSHESST 198
>TC19970 similar to UP|Q8W508 (Q8W508) Histone deacetylase, partial (17%)
Length = 508
Score = 28.5 bits (62), Expect = 0.23
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 47 TNGSLTCAACGCHRNFHKREVEVV 70
T+GS T ACG HR F K + +V
Sbjct: 97 TSGSCTLGACGMHRRFSKTCILIV 26
>TC13676 weakly similar to UP|O80500 (O80500) At2g44600 protein
(At2g44600/F16B22.9), partial (9%)
Length = 698
Score = 27.3 bits (59), Expect = 0.52
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 51 LTCAACGCHRNFHKREVEVVSE 72
L+C +C C NF+ RE E+ E
Sbjct: 130 LSCCSCSCFENFNGREREIGRE 65
>BP031854
Length = 477
Score = 26.6 bits (57), Expect = 0.88
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 52 TCAACGCHRNFHKREVEVVSESSSPHSNGT 81
T ACGCH N+ + E SS + GT
Sbjct: 275 TSIACGCHYNYFLEVWNIGDEHSSLATTGT 186
>TC19937 weakly similar to GB|AAL87371.1|19548015|AY081718
AT4g33920/F17I5_110 {Arabidopsis thaliana;}, partial
(30%)
Length = 593
Score = 25.4 bits (54), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 46 STNGSLTCAACGCHR-NFHKREVEVVSESSSPHS 78
S S CA GCHR + H+R V+ ++P S
Sbjct: 248 SDGASSPCATEGCHRCHHHRRSTCPVASGTAPTS 147
>AV415837
Length = 422
Score = 25.0 bits (53), Expect = 2.6
Identities = 14/37 (37%), Positives = 18/37 (47%), Gaps = 2/37 (5%)
Frame = +3
Query: 41 REFMPSTNGSLTCAA--CGCHRNFHKREVEVVSESSS 75
R P N LT A+ C C +FH + +V ES S
Sbjct: 30 RSCYPKQNSPLTLASFLCRCPPHFHPTLLSIVLESPS 140
>TC20112 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (11%)
Length = 523
Score = 25.0 bits (53), Expect = 2.6
Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
Frame = +1
Query: 35 YAVDGCREFMPSTNGSLTCAACG-CHRNFHKR 65
YA C+ P +GSL C+ CG C + F R
Sbjct: 217 YAATRCQ---PRRSGSLRCSICGPCTQRFRTR 303
>BP032030
Length = 454
Score = 24.6 bits (52), Expect = 3.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +3
Query: 46 STNGSLTCAACGCHRNFHKREVEVVSESSSPHSNGT 81
S S C H+ FH + S + HSNG+
Sbjct: 264 SDQSSAISVGCHLHQYFHNHQRH*QSSMAQKHSNGS 371
>TC12205
Length = 493
Score = 24.6 bits (52), Expect = 3.3
Identities = 16/52 (30%), Positives = 21/52 (39%), Gaps = 5/52 (9%)
Frame = +3
Query: 11 SEDPQRSVVKYGECQKNHAANVGGYAVD-----GCREFMPSTNGSLTCAACG 57
S R + + Q N G AV+ G R +PS NGS + CG
Sbjct: 168 SSHAARMLYDVSQSQTGRTGNSNGAAVNCPQSKGYRSCLPSANGSGSRQRCG 323
>TC16991 similar to GB|AAN73306.1|25141223|BT002309 At3g51670/T18N14_50
{Arabidopsis thaliana;}, partial (38%)
Length = 681
Score = 24.3 bits (51), Expect = 4.4
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = +3
Query: 32 VGGYAVDGCREFMPSTNGSLTCA 54
VGG+ ++ EF+P+ GS T A
Sbjct: 252 VGGWDLEYSAEFVPNAEGSYTIA 320
>TC15261 weakly similar to UP|Q9ZQ55 (Q9ZQ55) At2g22570 protein, partial
(75%)
Length = 1031
Score = 23.9 bits (50), Expect = 5.7
Identities = 13/46 (28%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Frame = -3
Query: 7 VVRRSEDPQRSVVKYGECQKNHAA--NVGGYAVDGCREFMPSTNGS 50
V+R E R ++ +K H ++G + + CR + STNG+
Sbjct: 288 VMRIKESENRPILLSKLFRKTHRFLYHLGNFLIGFCRSHIASTNGA 151
>AU251865
Length = 161
Score = 23.9 bits (50), Expect = 5.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 23 ECQKNHAANVGGYA 36
+C +NHAA +G YA
Sbjct: 118 KCLRNHAATLGSYA 159
>BP052710
Length = 508
Score = 23.5 bits (49), Expect = 7.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 45 PSTNGSLTCAACGCHRNFHKREVEVVSESS 74
P NG+ A GC++N +E+EV E+S
Sbjct: 294 PLNNGADNSA--GCNKNKRGKEIEVGGENS 377
>TC10938 weakly similar to GB|AAB60293.1|887785|ATU23794 ILR1 {Arabidopsis
thaliana;} , partial (6%)
Length = 518
Score = 23.5 bits (49), Expect = 7.4
Identities = 7/13 (53%), Positives = 11/13 (83%)
Frame = -3
Query: 14 PQRSVVKYGECQK 26
P S+++YGEC+K
Sbjct: 261 PSSSIMRYGECKK 223
>AV772687
Length = 495
Score = 23.5 bits (49), Expect = 7.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -2
Query: 48 NGSLTCAACGCHRNFHK 64
NG+L C CH N K
Sbjct: 476 NGNLACTGSQCHLNLEK 426
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.129 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,716,370
Number of Sequences: 28460
Number of extensions: 23733
Number of successful extensions: 132
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of query: 81
length of database: 4,897,600
effective HSP length: 57
effective length of query: 24
effective length of database: 3,275,380
effective search space: 78609120
effective search space used: 78609120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)
Medicago: description of AC139600.10