TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139356.2 + phase: 0 
         (180 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18518 similar to UP|APKB_ARATH (P46573) Protein kinase APK1B  ...    28  1.2
TC9451 homologue to UP|O24457 (O24457) Pyruvate dehydrogenase E1...    27  1.6
TC11649 similar to UP|Q9M4G3 (Q9M4G3) CMP-KDO synthetase precurs...    27  2.7
TC19383                                                                27  2.7
TC10168 homologue to UP|Q8LK24 (Q8LK24) SOS2-like protein kinase...    27  2.7
BG662040                                                               26  4.6
TC12201                                                                25  6.0
TC10965                                                                25  6.0
TC17431 similar to UP|Q44395 (Q44395) Ti plasmid pTi15955 T-DNA ...    25  6.0
TC14765 homologue to UP|Q8T5T7 (Q8T5T7) Porin, partial (4%)            25  6.0
TC9256 homologue to UP|ERD2_PETHY (Q9ZTN2) ER lumen protein reta...    25  6.0
AI967644                                                               25  6.0
CB826761                                                               25  6.0
AV425286                                                               25  6.0
BP069935                                                               25  7.8
TC15476 similar to UP|THRC_SOLTU (Q9MT28) Threonine synthase, ch...    25  7.8
TC11475                                                                25  7.8
TC10548 similar to UP|Q940V0 (Q940V0) T23O15.3/T23O15.3, partial...    25  7.8
BP066479                                                               25  7.8

>TC18518 similar to UP|APKB_ARATH (P46573) Protein kinase APK1B  , partial
           (10%)
          Length = 623

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 11/19 (57%), Positives = 13/19 (67%)
 Frame = +3

Query: 133 LGCCKLEQLKYFCKYNNHH 151
           LGCCKLE   YFC+  + H
Sbjct: 423 LGCCKLESF-YFCRTESSH 476


>TC9451 homologue to UP|O24457 (O24457) Pyruvate dehydrogenase E1 alpha
           subunit  (At1g01090/T25K16_8) , partial (52%)
          Length = 1082

 Score = 27.3 bits (59), Expect = 1.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 129 LGQMLGCCKLEQLKYFCKYNNHHRT 153
           L Q+LG C  EQ + FC YN    T
Sbjct: 586 LTQLLGHCTSEQNQTFCPYNTSRHT 512


>TC11649 similar to UP|Q9M4G3 (Q9M4G3) CMP-KDO synthetase precursor  ,
           partial (33%)
          Length = 582

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 138 LEQLKYFCKYNNHHRTGAKNRVLYLTYF 165
           LEQ K+ C  N++H+T   +RV Y+ +F
Sbjct: 315 LEQ*KHLCIINHYHKTSQIDRV-YIPFF 395


>TC19383 
          Length = 558

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 118 KKKNINWLFLLLGQMLGCCKLEQLKYFCK 146
           K++  N L L + ++ GC KLE LK+ C+
Sbjct: 536 KQQQHNQLCLSMEKVKGC*KLENLKWACR 450


>TC10168 homologue to UP|Q8LK24 (Q8LK24) SOS2-like protein kinase, partial
           (21%)
          Length = 717

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 63  QMPFDLRTKFDVISQYLVTNMNTMHDRAPKILMN 96
           Q+P  L+TK     Q LVT    +H+R P+IL++
Sbjct: 290 QLPSKLKTK-----QALVTTSTRVHNRNPRILIS 376


>BG662040 
          Length = 393

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 118 KKKNINWLFLLLGQMLGCCKLEQLKYFCKYNNHHRTG-AKNRVLYLTY 164
           K  +IN  FL        C+L+ + YFC     HR G   ++VLY  Y
Sbjct: 152 KAPHINLNFLRFDSFP*LCRLQAVLYFC-----HRAG*GLHQVLYHNY 280


>TC12201 
          Length = 503

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 140 QLKYFCKYNNHHRTGAKNRVLYLTYFELCQQLD 172
           +LKYF  Y N +    K  +   +  +LCQQL+
Sbjct: 366 KLKYFINYENMNTITVKVPITLSSCRKLCQQLN 268


>TC10965 
          Length = 507

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 122 INWLFLLLGQMLGCCKLE 139
           IN LFLLLGQ+L C  ++
Sbjct: 55  INLLFLLLGQILRCIMVQ 108


>TC17431 similar to UP|Q44395 (Q44395) Ti plasmid pTi15955 T-DNA region,
           partial (12%)
          Length = 737

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 140 QLKYFCKYNNHHRTGAKNRVLYLTYFELCQQLD 172
           +LKYF  Y N +    K  +   +  +LCQQL+
Sbjct: 629 KLKYFINYENMNTITVKVPITLSSCRKLCQQLN 531


>TC14765 homologue to UP|Q8T5T7 (Q8T5T7) Porin, partial (4%)
          Length = 1114

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 137  KLEQLKYFCKYNNHHRTGAKNRV 159
            KL  +KY+CKY   H T  +N +
Sbjct: 1114 KL*TIKYYCKYQKIHYTEFQNYI 1046


>TC9256 homologue to UP|ERD2_PETHY (Q9ZTN2) ER lumen protein retaining
          receptor (HDEL receptor) (PGP169-12), complete
          Length = 1009

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 2  TANHTHVPPRRRSAPR 17
          TA HTH P  RRSA R
Sbjct: 41 TATHTHTPIGRRSAQR 88


>AI967644 
          Length = 244

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 27  WATNHRA--KIHNLNHLLQNKIFSITGDVQCKSCQTKFQ 63
           W T+ +A  KIHNL  +L   +   T  V   + +TKFQ
Sbjct: 159 WTTHCKAYPKIHNLRGVLGVSLRLKTNTVAAATTKTKFQ 43


>CB826761 
          Length = 417

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 5  HTHVPPRRRSAPRSGPIPIP 24
          H   PPRRRS   S P+P P
Sbjct: 33 HLDQPPRRRSPCVSSPLPDP 92


>AV425286 
          Length = 320

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 14/39 (35%), Positives = 19/39 (47%)
 Frame = -1

Query: 5   HTHVPPRRRSAPRSGPIPIPFIWATNHRAKIHNLNHLLQ 43
           H H  P + SA     +PI  ++      KIH L+H LQ
Sbjct: 278 HIHECPHKLSA-----VPIELLYLVG*HQKIHALDHHLQ 177


>BP069935 
          Length = 376

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 2   TANHT-HVPPRRRSAPRSGPIPIPF 25
           T NH  H  PRRR++PR G   + F
Sbjct: 296 TQNHDDHSGPRRRASPRIGAATVMF 222


>TC15476 similar to UP|THRC_SOLTU (Q9MT28) Threonine synthase, chloroplast
           precursor  (TS) , partial (19%)
          Length = 658

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 83  MNTMHDRAP-KILMNPRLPRCAHCNQEN 109
           M++ H  +P   L NPR+P+   C+Q N
Sbjct: 158 MSSAHHNSPISRLDNPRVPQLKQCSQSN 75


>TC11475 
          Length = 561

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 147 YNNHHRTGAKNRVLYLTYF 165
           Y   HRTG    VLY+ YF
Sbjct: 488 YVKFHRTGLTTLVLYIVYF 544


>TC10548 similar to UP|Q940V0 (Q940V0) T23O15.3/T23O15.3, partial (10%)
          Length = 760

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 4   NHTHVPPRRRSAPRSGPIPIPFIWATNHRA 33
           NH H+  R R   RS   PIP+ +  N  A
Sbjct: 642 NHIHLM*RVRWVERSNTFPIPYSYQRNRCA 731


>BP066479 
          Length = 445

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -3

Query: 36  HNLNHLLQNKIFSITGDVQCKSCQTKFQMPFDLRTKFDVISQYLVTNMNTMHDRAPKILM 95
           HN  HLL   + ++  ++  ++C    Q P  LR +F V S+ L +    +  + P + +
Sbjct: 395 HNFIHLLSL*VLALGLNIWPRTCIMVLQFPCHLREQF-VYSK*LNSWSKLVGQQTPCVNL 219

Query: 96  NPRLPRCAHCN 106
           N ++     CN
Sbjct: 218 NFQIRN*ELCN 186


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.138    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,385,567
Number of Sequences: 28460
Number of extensions: 71552
Number of successful extensions: 630
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of query: 180
length of database: 4,897,600
effective HSP length: 84
effective length of query: 96
effective length of database: 2,506,960
effective search space: 240668160
effective search space used: 240668160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)