BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139355.5 - phase: 0
(672 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7944 homologue to UP|Q9ASR1 (Q9ASR1) At1g56070/T6H22_13 (Elong... 106 1e-23
AV780663 91 8e-19
BP067424 78 4e-15
AV407536 75 3e-14
TC8094 homologue to UP|EFTU_PEA (O24310) Elongation factor Tu, c... 65 5e-11
TC19678 similar to UP|Q8RWP3 (Q8RWP3) GTP-binding protein LepA-l... 63 1e-10
TC14056 homologue to UP|P93769 (P93769) Elongation factor-1 alph... 62 4e-10
AV428261 60 1e-09
TC8093 homologue to UP|EFTU_TOBAC (P41342) Elongation factor Tu,... 59 3e-09
TC14038 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (47%) 57 1e-08
TC14046 homologue to UP|P93769 (P93769) Elongation factor-1 alph... 55 4e-08
TC14050 homologue to UP|EF1A_TOBAC (P43643) Elongation factor 1-... 52 4e-07
AV417779 47 1e-05
BP044091 44 6e-05
BP070882 44 6e-05
TC12156 homologue to UP|Q93Y02 (Q93Y02) GTP-binding protein typA... 44 1e-04
AV408944 42 4e-04
AV409888 39 0.004
AV407270 34 0.087
TC19746 31 0.74
>TC7944 homologue to UP|Q9ASR1 (Q9ASR1) At1g56070/T6H22_13 (Elongation
factor EF-2), complete
Length = 2971
Score = 106 bits (264), Expect = 1e-23
Identities = 59/144 (40%), Positives = 85/144 (58%), Gaps = 2/144 (1%)
Frame = +1
Query: 67 VRNFSIIAHVDHGKSTLADRLLELTGTIKKGL-GQPQYLDKLQVERERGITVKAQTATMF 125
+RN S+IAHVDHGKSTL D L+ G I + + G + D E ERGIT+K+ +++
Sbjct: 262 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLY 441
Query: 126 YKNI-INGDDFKDGKESSNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQ 184
Y+ + FK + + YL+NLID+PGHVDFS EV+ +L G L+VVD +GV Q
Sbjct: 442 YEMTDVALKSFKGERMGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQ 621
Query: 185 TVANFYLAFESNLAIIPVINKIDQ 208
T A + + +NK+D+
Sbjct: 622 TETVLRQALGERIKPVLTVNKMDR 693
>AV780663
Length = 568
Score = 90.5 bits (223), Expect = 8e-19
Identities = 53/147 (36%), Positives = 79/147 (53%)
Frame = +1
Query: 64 PELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGLGQPQYLDKLQVERERGITVKAQTAT 123
P +RN ++IAHVDHGK+TL DR+L G + + +D +ERERGIT+ ++ T
Sbjct: 157 PNRLRNVAVIAHVDHGKTTLMDRILRQCGA---DIPHERAMDSNSLERERGITIASKVTT 327
Query: 124 MFYKNIINGDDFKDGKESSNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQA 183
+ +K LN++DTPGH D EV R + +G + VVDA +G A
Sbjct: 328 VSWKE---------------NELNMVDTPGHADLGGEVERVVGMVEGAV*VVDAGEGPLA 462
Query: 184 QTVANFYLAFESNLAIIPVINKIDQPT 210
QT A + L + + NK+D+P+
Sbjct: 463 QTKLVLAKALKYGLRPLLLKNKVDRPS 543
>BP067424
Length = 473
Score = 78.2 bits (191), Expect = 4e-15
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Frame = +1
Query: 67 VRNFSIIAHVDHGKSTLADRLLELTG---TIKKGLGQPQYLDKLQVERERGITVKAQTAT 123
+RN I+AHVDHGK+TLAD+L+ + K G+ +++D L E+ R IT+K+ +
Sbjct: 169 IRNICILAHVDHGKTTLADQLIAVASGGMVHPKVAGRVRFMDYLDEEQRRAITMKSSSIA 348
Query: 124 MFYKNIINGDDFKDGKESSNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQ 179
+ Y +++ +NLID+PGH+DF EVS + G LL+VDA +
Sbjct: 349 LRY---------------NHHTVNLIDSPGHIDFCGEVSTAARLSDGALLLVDAVE 471
>AV407536
Length = 382
Score = 75.1 bits (183), Expect = 3e-14
Identities = 50/143 (34%), Positives = 79/143 (54%), Gaps = 8/143 (5%)
Frame = +2
Query: 74 AHVDHGKSTLADRLLELTGTI--------KKGLGQPQYLDKLQVERERGITVKAQTATMF 125
AH+D GK+TL +R+L G I + G+G +D + +ERE+GIT+ Q+A +
Sbjct: 5 AHIDSGKTTLTERVLFYAGRIHEIHEVRGRDGVGAK--MDSMDLEREKGITI--QSAATY 172
Query: 126 YKNIINGDDFKDGKESSNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQT 185
+KD K +N+IDTPGHVDF+ EV R+L G +LV+ + GVQ+Q+
Sbjct: 173 CS-------WKDCK------INIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQS 313
Query: 186 VANFYLAFESNLAIIPVINKIDQ 208
+ ++ + INK+D+
Sbjct: 314 ITVDRQMRRYDVPRLAFINKLDR 382
>TC8094 homologue to UP|EFTU_PEA (O24310) Elongation factor Tu, chloroplast
precursor (EF-Tu), partial (60%)
Length = 1092
Score = 64.7 bits (156), Expect = 5e-11
Identities = 74/299 (24%), Positives = 123/299 (40%), Gaps = 29/299 (9%)
Frame = +1
Query: 27 SSRITHERFSITRALFCTQSRQNYTKEKAIIDLSQYPPELVRNFSIIAHVDHGKSTLADR 86
SS I H +T + ++R ++T A + P + N I HVDHGK+TL
Sbjct: 223 SSTILH----VTPSSSARRNRSSFTVRAARGKFERKKPHV--NIGTIGHVDHGKTTLTAA 384
Query: 87 LLELTGTIKKGLGQPQYLDKLQV---ERERGITVKAQTATMFYKNIINGDDFKDGKESSN 143
L ++ G P+ D++ ER RGIT+ TAT+ Y+ E+ +
Sbjct: 385 LTMALASL--GNSAPKKYDEIDAAPEERARGITIN--TATVEYET-----------ETRH 519
Query: 144 YLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLA-IIPV 202
Y +D PGH D+ + A G +LVV A G QT + LA + + ++
Sbjct: 520 YAH--VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNVVVF 693
Query: 203 INKIDQPTADP-----DRVKGQLKSMFDLDPSDALLTSAKTGVGLEHVL--PA------- 248
+NK DQ + + +L S ++ D +TS + LE ++ PA
Sbjct: 694 LNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPITSGSALLALEALMANPAIKRGEND 873
Query: 249 -----------VIERIPPPPGKSESSLRMLLLDSYFDEYRGVICHVAVVDGALRKGDKI 296
V IP P +++ + + D + RG + + G ++ GD +
Sbjct: 874 WVDKIYQLMDNVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRIERGTIKVGDVV 1050
>TC19678 similar to UP|Q8RWP3 (Q8RWP3) GTP-binding protein LepA-like
protein, partial (6%)
Length = 635
Score = 63.2 bits (152), Expect = 1e-10
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +2
Query: 632 GGDITRKKKLLEKQKEGKKRMKRVGSVDVPQEAFHELLKV 671
GGDITRKKKLL+KQ EGKKRMK +G VDVP EAF +LK+
Sbjct: 224 GGDITRKKKLLKKQAEGKKRMKSIGKVDVPPEAFMAVLKL 343
>TC14056 homologue to UP|P93769 (P93769) Elongation factor-1 alpha, complete
Length = 1897
Score = 61.6 bits (148), Expect = 4e-10
Identities = 74/297 (24%), Positives = 109/297 (35%), Gaps = 47/297 (15%)
Frame = +1
Query: 69 NFSIIAHVDHGKSTLADRLLELTGTI----------------KKGLGQPQYLDKLQVERE 112
N +I HVD GKST L+ G I K+ LDKL+ ERE
Sbjct: 133 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 312
Query: 113 RGITVKAQTATMFYKNIINGDDFKDGKESSNYLLNLIDTPGHVDFSYEVSRSLAACQGVL 172
RGIT+ E++ Y +ID PGH DF + + +
Sbjct: 313 RGITIDIALWKF---------------ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAV 447
Query: 173 LVVDAAQG-------VQAQTVANFYLAFESNL-AIIPVINKIDQPTA------------- 211
L++D+ G QT + LAF + +I NK+D T
Sbjct: 448 LIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKE 627
Query: 212 ----------DPDRVKGQLKSMFDLDPSDALLTSAKTGVGLEHVLPAVIERIPPPPGKSE 261
+PD++ S F+ D T+ G L +++I P S+
Sbjct: 628 VSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG--PTLLEALDQINEPKRPSD 801
Query: 262 SSLRMLLLDSYFDEYRGVICHVAVVDGALRKGDKISSAATGKSYEAMDIGIMHPELT 318
LR+ L D Y G + V G L+ G ++ A TG + E + + H LT
Sbjct: 802 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGFVVTFAPTGLTTEVKSVEMHHESLT 972
>AV428261
Length = 210
Score = 60.1 bits (144), Expect = 1e-09
Identities = 28/65 (43%), Positives = 42/65 (64%)
Frame = +2
Query: 489 EYVGPVITLLSERRGEQLEYSFIDSQRVFMKYRLPLREIVIDFYNELKSITSGYASFDYE 548
E+VGP++ L RRGE ++ F+ R + Y LPL E+V DF++ +KS + GYAS +Y
Sbjct: 8 EFVGPIMELSQSRRGEFVDMRFLVQGRTTLVYELPLAELVTDFFDCIKSRSKGYASMEYS 187
Query: 549 DSDYQ 553
S Y+
Sbjct: 188 LSGYR 202
>TC8093 homologue to UP|EFTU_TOBAC (P41342) Elongation factor Tu,
chloroplast precursor (EF-Tu), partial (58%)
Length = 1146
Score = 58.9 bits (141), Expect = 3e-09
Identities = 46/144 (31%), Positives = 65/144 (44%), Gaps = 4/144 (2%)
Frame = +1
Query: 69 NFSIIAHVDHGKSTLADRLLELTGTIKKGLGQPQYLDKLQV---ERERGITVKAQTATMF 125
N I HVDHGK+TL L ++ G P+ D++ ER RGIT+ TAT+
Sbjct: 358 NIGTIGHVDHGKTTLTAALTMALASL--GNSAPKKYDEIDAAPEERARGITIN--TATVE 525
Query: 126 YKNIINGDDFKDGKESSNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQT 185
Y E+ N +D PGH D+ + A G +LVV A G QT
Sbjct: 526 Y-------------ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT 666
Query: 186 VANFYLAFESNLA-IIPVINKIDQ 208
+ LA + + ++ +NK DQ
Sbjct: 667 KEHILLAKQVGVPNMVVFLNKQDQ 738
>TC14038 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (47%)
Length = 1844
Score = 56.6 bits (135), Expect = 1e-08
Identities = 71/296 (23%), Positives = 107/296 (35%), Gaps = 47/296 (15%)
Frame = +3
Query: 69 NFSIIAHVDHGKSTLADRLLELTGTI----------------KKGLGQPQYLDKLQVERE 112
N +I HVD GKST L+ G I K+ LDKL+ ERE
Sbjct: 114 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 293
Query: 113 RGITVKAQTATMFYKNIINGDDFKDGKESSNYLLNLIDTPGHVDFSYEVSRSLAACQGVL 172
RGIT+ E++ Y +ID PGH DF + + +
Sbjct: 294 RGITIDIALWKF---------------ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAV 428
Query: 173 LVVDAAQG-------VQAQTVANFYLAFESNL-AIIPVINKIDQPTA------------- 211
L++D+ G QT + LAF + +I NK+D T
Sbjct: 429 LIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYEEIVKE 608
Query: 212 ----------DPDRVKGQLKSMFDLDPSDALLTSAKTGVGLEHVLPAVIERIPPPPGKSE 261
+PD++ S F+ D T+ G L +++I P S+
Sbjct: 609 VSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG--PTLLEALDQINEPKRPSD 782
Query: 262 SSLRMLLLDSYFDEYRGVICHVAVVDGALRKGDKISSAATGKSYEAMDIGIMHPEL 317
LR+ L D Y G + V G ++ G ++ TG + E + + H L
Sbjct: 783 KPLRLPLQDVYKIGGIGTVPVGRVETGLIKPGMVVTFGPTGLTTEVKSVEMHHEAL 950
>TC14046 homologue to UP|P93769 (P93769) Elongation factor-1 alpha, partial
(84%)
Length = 1506
Score = 55.1 bits (131), Expect = 4e-08
Identities = 71/296 (23%), Positives = 106/296 (34%), Gaps = 47/296 (15%)
Frame = +1
Query: 69 NFSIIAHVDHGKSTLADRLLELTGTI----------------KKGLGQPQYLDKLQVERE 112
N +I HVD GKST L+ G I K+ LDKL+ ERE
Sbjct: 106 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 285
Query: 113 RGITVKAQTATMFYKNIINGDDFKDGKESSNYLLNLIDTPGHVDFSYEVSRSLAACQGVL 172
RGIT+ E++ Y +ID PGH DF + + +
Sbjct: 286 RGITIDIALWKF---------------ETNKYYCTVIDAPGHRDFIKNMITGTSQADCAV 420
Query: 173 LVVDAAQG-------VQAQTVANFYLAFESNL-AIIPVINKIDQPTA------------- 211
L++D+ G QT + LAF + +I NK+D T
Sbjct: 421 LIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEILKE 600
Query: 212 ----------DPDRVKGQLKSMFDLDPSDALLTSAKTGVGLEHVLPAVIERIPPPPGKSE 261
+PD++ S F+ D T+ G L +++I P ++
Sbjct: 601 VSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG--PTLLEALDQINKPKRPTD 774
Query: 262 SSLRMLLLDSYFDEYRGVICHVAVVDGALRKGDKISSAATGKSYEAMDIGIMHPEL 317
LR+ L D Y G + V G L+ G +S G + E + + H L
Sbjct: 775 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGVLVSFGPNGLTTEVKSMEMHHEAL 942
>TC14050 homologue to UP|EF1A_TOBAC (P43643) Elongation factor 1-alpha
(EF-1-alpha) (Vitronectin-like adhesion protein 1)
(PVN1), partial (38%)
Length = 583
Score = 51.6 bits (122), Expect = 4e-07
Identities = 46/166 (27%), Positives = 64/166 (37%), Gaps = 24/166 (14%)
Frame = +2
Query: 69 NFSIIAHVDHGKSTLADRLLELTGTI----------------KKGLGQPQYLDKLQVERE 112
N +I HVD GKST L+ G I K+ LDKL+ ERE
Sbjct: 95 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 274
Query: 113 RGITVKAQTATMFYKNIINGDDFKDGKESSNYLLNLIDTPGHVDFSYEVSRSLAACQGVL 172
RGIT+ E++ Y +ID PGH DF + + +
Sbjct: 275 RGITIDIALWKF---------------ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAV 409
Query: 173 LVVDAAQG-------VQAQTVANFYLAFESNL-AIIPVINKIDQPT 210
L++D+ G QT + LAF + +I NK+D T
Sbjct: 410 LIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 547
>AV417779
Length = 401
Score = 47.0 bits (110), Expect = 1e-05
Identities = 35/102 (34%), Positives = 43/102 (41%), Gaps = 16/102 (15%)
Frame = +1
Query: 72 IIAHVDHGKSTLADRLLELTGTIKK-------------GLGQPQY---LDKLQVERERGI 115
+I HVD GKST L+ G I+K G G +Y LDKL+ ERERGI
Sbjct: 112 VIGHVDSGKSTTTGHLIYKCGGIEKRAIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGI 291
Query: 116 TVKAQTATMFYKNIINGDDFKDGKESSNYLLNLIDTPGHVDF 157
T+ E+ Y +ID PGH DF
Sbjct: 292 TIDIALWKF---------------ETEKYSFTIIDAPGHRDF 372
>BP044091
Length = 543
Score = 44.3 bits (103), Expect = 6e-05
Identities = 21/39 (53%), Positives = 26/39 (65%)
Frame = -3
Query: 384 LSHAIEKLTCNDASVSVTKETSTALGLGFRCGFLGLLHM 422
L A+EKL ND ++ ETS A+G FRCGFLGL H+
Sbjct: 541 LRDALEKL*LNDVALKFEPETSGAMGFDFRCGFLGLHHI 425
>BP070882
Length = 496
Score = 44.3 bits (103), Expect = 6e-05
Identities = 47/181 (25%), Positives = 78/181 (42%), Gaps = 7/181 (3%)
Frame = +2
Query: 4 LRKASKTLKQSNYVSLLFNFNPLSSRITHER------FSITRALFCTQSRQNYTKEKAII 57
LR +S T ++ ++ P SS I H F+ T + F + S N +++
Sbjct: 23 LRNSSSTCRRH------LSYLPFSSHILHSSLSSSPLFNDTPSSFSSPSSSN-PWWRSMA 181
Query: 58 DLSQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGLGQP-QYLDKLQVERERGIT 116
++ P + N + HVDHGK+TL + ++ K +DK E++RGIT
Sbjct: 182 TFTRTKPHV--NVGTMGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKKRGIT 355
Query: 117 VKAQTATMFYKNIINGDDFKDGKESSNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVD 176
+ TA + Y+ + +Y +D PGH D+ + A G +LVV
Sbjct: 356 IA--TAHVEYETV-----------KRHYAH--VDCPGHADYVKNMITGAAQMDGGILVVS 490
Query: 177 A 177
A
Sbjct: 491 A 493
>TC12156 homologue to UP|Q93Y02 (Q93Y02) GTP-binding protein typA (Tyrosine
phosphorylated protein A), partial (30%)
Length = 359
Score = 43.5 bits (101), Expect = 1e-04
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +3
Query: 452 DGSKLEVQNPAALPSNPKQRVVACWEPTVIATIVMPSEYVGPVITLLSERRGEQLEYSFI 511
+G + V P + ++++ EP IAT+ +P ++G V+ LL +RRG+ + +
Sbjct: 39 EGYEFMVGPPKVINKTVNEKLL---EPFEIATVEVPEVHMGAVVELLGKRRGQMFDMQGV 209
Query: 512 DSQ-RVFMKYRLPLREIVIDFYNELKSITSGYASFDYEDSDYQP 554
S+ F+KY++P R + + N + + + G A + Y P
Sbjct: 210 GSEGTTFLKYKIPTRGL-LGLRNAILTASRGTAILNTIFDSYGP 338
>AV408944
Length = 295
Score = 41.6 bits (96), Expect = 4e-04
Identities = 18/28 (64%), Positives = 21/28 (74%)
Frame = +1
Query: 67 VRNFSIIAHVDHGKSTLADRLLELTGTI 94
+RN S+IAHVDHGKSTL D L+ G I
Sbjct: 208 IRNMSVIAHVDHGKSTLTDSLVAAAGII 291
>AV409888
Length = 426
Score = 38.5 bits (88), Expect = 0.004
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +2
Query: 67 VRNFSIIAHVDHGKSTLADRLLELT 91
VRN +I+AHVDHGK+TL D +L T
Sbjct: 335 VRNIAIVAHVDHGKTTLVDAMLRQT 409
>AV407270
Length = 348
Score = 33.9 bits (76), Expect = 0.087
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Frame = +3
Query: 177 AAQGVQAQTVANFYLAFESNLAIIPVINKIDQPTADPDRVKGQLKSMF-DLDPSD----- 230
+ +G QT A E +++ V+NKID+P+A P+ V +F +L+ +D
Sbjct: 3 SVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPEFVVNSTFELFIELNATDEQCDF 182
Query: 231 ----ALLTSAKTGVGLEH-------VLPAVIERIPPPPGKSESSLRMLLLDSYFD 274
A K G+ E+ + +I IP P + +L+ML+ + +D
Sbjct: 183 QVIYASGIKGKAGLSAENLAEDLGPLFETIIRCIPGPRIVKDGALQMLVTNIEYD 347
>TC19746
Length = 532
Score = 30.8 bits (68), Expect = 0.74
Identities = 18/57 (31%), Positives = 31/57 (53%)
Frame = -3
Query: 404 TSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIYEYSDGSKLEVQN 460
TS AL LGF FLGL+ + ++R + + ++ P + ++ E + S L +QN
Sbjct: 245 TSLALFLGFLLPFLGLMMLKNLNRRCRRPHYPILVELKPLL*WVLEDTLESSLPLQN 75
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,430,880
Number of Sequences: 28460
Number of extensions: 113812
Number of successful extensions: 542
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of query: 672
length of database: 4,897,600
effective HSP length: 96
effective length of query: 576
effective length of database: 2,165,440
effective search space: 1247293440
effective search space used: 1247293440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC139355.5