TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139355.4 + phase: 0 
         (537 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8329 similar to UP|BAD06717 (BAD06717) WRKY transcription fact...   111  3e-25
TC14849 similar to UP|Q40090 (Q40090) SPF1 protein, partial (37%)     105  2e-23
BP076060                                                               92  3e-19
AV427157                                                               89  1e-18
TC8297 similar to UP|Q40828 (Q40828) WRKY3, partial (27%)              84  7e-17
TC7955 similar to UP|WR11_ARATH (Q9SV15) Probable WRKY transcrip...    82  2e-16
TC14909 similar to UP|WR21_ARATH (O04336) Probable WRKY transcri...    82  2e-16
TC7956 similar to GB|AAM61419.1|21537078|AY084855 putaive DNA-bi...    81  5e-16
TC9067 similar to UP|WR15_ARATH (O22176) Probable WRKY transcrip...    80  8e-16
AV420160                                                               80  1e-15
AV408330                                                               80  1e-15
BP046076                                                               78  3e-15
TC15775 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcri...    77  5e-15
TC11124 similar to UP|Q8H9D7 (Q8H9D7) WRKY-type DNA binding prot...    76  2e-14
AV423663                                                               75  3e-14
BI420856                                                               74  5e-14
TC11734 similar to UP|WR49_ARATH (Q9FHR7) Probable WRKY transcri...    74  8e-14
TC15932 similar to UP|WR61_ARATH (Q8VWV6) Probable WRKY transcri...    73  1e-13
TC8298 homologue to UP|Q9SXP4 (Q9SXP4) DNA-binding protein NtWRK...    57  1e-09
TC11031 homologue to UP|WR65_ARATH (Q9LP56) Probable WRKY transc...    54  6e-08

>TC8329 similar to UP|BAD06717 (BAD06717) WRKY transcription factor 1,
           partial (41%)
          Length = 1717

 Score =  111 bits (277), Expect = 3e-25
 Identities = 58/127 (45%), Positives = 78/127 (60%), Gaps = 2/127 (1%)
 Frame = +1

Query: 135 STNKSTKVINVNDEISELLPAKRVRVSVRAKC-DTP-TMNDGCQWRKYGQKIAKGNPCPR 192
           S + ST   +      E + AK  R  VR +  DT   + DG QWRKYGQK+ + NPCPR
Sbjct: 466 SESSSTDEDSFKKPREETIKAKISRAYVRTEATDTGFVVKDGYQWRKYGQKVTRDNPCPR 645

Query: 193 AYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQVTASAMAYTTSAAASMMVSG 252
           AY++C+ AP+CPV+K+VQR  DD S+L+ TYEG HNHP     S M  T+ +  ++ + G
Sbjct: 646 AYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHP---QPSQMEATSGSGRNVSLVG 816

Query: 253 SSTSSSS 259
           S  SS S
Sbjct: 817 SMPSSKS 837


>TC14849 similar to UP|Q40090 (Q40090) SPF1 protein, partial (37%)
          Length = 1389

 Score =  105 bits (262), Expect = 2e-23
 Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 7/166 (4%)
 Frame = +2

Query: 137 NKSTKVINVNDEISELLPAKRV----RVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPR 192
           +K  KV   N+ IS   P  R     RV V+   D   ++DG +WRKYGQK+ KGNP PR
Sbjct: 293 SKRWKVEGENEGISA--PGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 466

Query: 193 AYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQVTASAMAYTTSAAASMMVSG 252
           +YY+CT  P CPVRK V+R + D+  +ITTYEG HNH +     +  ++ +       + 
Sbjct: 467 SYYKCT-HPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGNHSVTRPLPNNTAN 643

Query: 253 SSTSSSSSHQNQNIHHNNSTSF---GNSPTQINGLNFNHHQFEQSR 295
           +   SS +HQ+ +  +NNS        +P Q+    F     +Q++
Sbjct: 644 AIRPSSVTHQHHHNTNNNSLQSLRPQQAPDQVQSSPFTLEMLQQNQ 781



 Score = 30.0 bits (66), Expect = 0.98
 Identities = 19/80 (23%), Positives = 34/80 (41%)
 Frame = +2

Query: 215 DMSILITTYEGTHNHPLQVTASAMAYTTSAAASMMVSGSSTSSSSSHQNQNIHHNNSTSF 274
           D  I    Y+GTHNHP      A    +S+++S+ +  S+  S+         H +    
Sbjct: 11  DGQITEIVYKGTHNHP---KPQATRRNSSSSSSLPIPHSNHISNDIQDQSYATHGSGQMD 181

Query: 275 GNSPTQINGLNFNHHQFEQS 294
             +  + + ++     FEQS
Sbjct: 182 SVATPENSSISIGDDDFEQS 241


>BP076060 
          Length = 483

 Score = 91.7 bits (226), Expect = 3e-19
 Identities = 53/85 (62%), Positives = 67/85 (78%), Gaps = 4/85 (4%)
 Frame = -1

Query: 457 LNLKLGEYP--QMVSNNLLNQN-GKGCLKGSYFKRLSPTTSSQAKNFMLLQPSLPFSVSK 513
           LNLKLG++   Q+VS+NLLNQN GKGC+ G YFKRL+ + +SQA+NFMLL+P+LPFSVS 
Sbjct: 483 LNLKLGQHHDHQLVSSNLLNQNNGKGCING-YFKRLT-SANSQARNFMLLKPTLPFSVSN 310

Query: 514 SSASKPPSIVNNI-NNFDLDKNKHN 537
           SS    PSIVN I +N+D D N H+
Sbjct: 309 SSTGTSPSIVNQIKHNYDPDMNTHH 235


>AV427157 
          Length = 379

 Score = 89.4 bits (220), Expect = 1e-18
 Identities = 46/96 (47%), Positives = 62/96 (63%), Gaps = 1/96 (1%)
 Frame = +3

Query: 135 STNKSTKVINVNDEISELLPAKRV-RVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRA 193
           S +K  K+ +   E+S    A R  RV V+   +   ++DG +WRKYGQK+ KGNP PR+
Sbjct: 93  SESKRRKLESYATELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRS 272

Query: 194 YYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNH 229
           YY+CT A  C VRK V+R + D+  +ITTYEG HNH
Sbjct: 273 YYKCTNA-GCMVRKHVERASHDLKSVITTYEGKHNH 377


>TC8297 similar to UP|Q40828 (Q40828) WRKY3, partial (27%)
          Length = 617

 Score = 83.6 bits (205), Expect = 7e-17
 Identities = 38/70 (54%), Positives = 46/70 (65%)
 Frame = +1

Query: 167 DTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGT 226
           D PT  D  QWRKYGQK  KG+P PR YY+C+    CP RK V+R  DD ++LI TYEG 
Sbjct: 160 DIPT--DDFQWRKYGQKPIKGSPYPRGYYKCSSEKGCPARKHVERAQDDPNMLIVTYEGE 333

Query: 227 HNHPLQVTAS 236
           H H +  TA+
Sbjct: 334 HRHLITTTAA 363


>TC7955 similar to UP|WR11_ARATH (Q9SV15) Probable WRKY transcription
           factor 11 (WRKY DNA-binding protein 11), partial (27%)
          Length = 579

 Score = 82.4 bits (202), Expect = 2e-16
 Identities = 38/77 (49%), Positives = 45/77 (58%)
 Frame = +3

Query: 156 KRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADD 215
           K VRV   +        D   WRKYGQK  KG+P PR YY+C+    CP RK V+R  DD
Sbjct: 42  KTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDD 221

Query: 216 MSILITTYEGTHNHPLQ 232
            ++LI TYEG H H LQ
Sbjct: 222 PTMLIVTYEGEHRHALQ 272


>TC14909 similar to UP|WR21_ARATH (O04336) Probable WRKY transcription
           factor 21 (WRKY DNA-binding protein 21), partial (22%)
          Length = 590

 Score = 82.0 bits (201), Expect = 2e-16
 Identities = 36/69 (52%), Positives = 45/69 (65%)
 Frame = +3

Query: 173 DGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQ 232
           D   WRKYGQK  KG+P PR YY+C+    CP RK V+RC ++ ++L+ TYEG HNHP  
Sbjct: 63  DDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLLVTYEGEHNHPKI 242

Query: 233 VTASAMAYT 241
            T  A A T
Sbjct: 243 PTQPANA*T 269


>TC7956 similar to GB|AAM61419.1|21537078|AY084855 putaive DNA-binding
           protein {Arabidopsis thaliana;} , partial (45%)
          Length = 1257

 Score = 80.9 bits (198), Expect = 5e-16
 Identities = 35/63 (55%), Positives = 41/63 (64%)
 Frame = +3

Query: 173 DGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQ 232
           D   WRKYGQK  KG+P PR YY+C+    CP RK V+R  DD ++LI TYEG H H  Q
Sbjct: 654 DEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPNMLIVTYEGEHRHQQQ 833

Query: 233 VTA 235
            TA
Sbjct: 834 QTA 842


>TC9067 similar to UP|WR15_ARATH (O22176) Probable WRKY transcription
           factor 15 (WRKY DNA-binding protein 15), partial (31%)
          Length = 660

 Score = 80.1 bits (196), Expect = 8e-16
 Identities = 33/59 (55%), Positives = 40/59 (66%)
 Frame = +3

Query: 173 DGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPL 231
           D   WRKYGQK  KG+P PR YY+C+    CP RK V+R  DD ++L+ TYEG HNH L
Sbjct: 126 DDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDAAMLVVTYEGEHNHAL 302


>AV420160 
          Length = 417

 Score = 79.7 bits (195), Expect = 1e-15
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
 Frame = +1

Query: 163 RAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITT 222
           ++K +T   +D   WRKYGQK  KG+P PR YYRC+ +  CP RKQV+R   D + L+ T
Sbjct: 127 KSKGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLMVT 306

Query: 223 YEGTHNHPLQV------TASAMAYTTSAAAS 247
           Y   HNH L V       ASA A T+S  A+
Sbjct: 307 YSYEHNHSLPVPKSHSSAASATATTSSDGAA 399


>AV408330 
          Length = 316

 Score = 79.7 bits (195), Expect = 1e-15
 Identities = 36/71 (50%), Positives = 48/71 (66%)
 Frame = +3

Query: 159 RVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSI 218
           R +   K +   + DG +WRKYGQK  K +P PR+YYRCT A +C V+K+V+R   D SI
Sbjct: 90  RFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSA-SCNVKKRVERSFTDPSI 266

Query: 219 LITTYEGTHNH 229
           ++TTYEG H H
Sbjct: 267 VVTTYEGQHTH 299


>BP046076 
          Length = 593

 Score = 78.2 bits (191), Expect = 3e-15
 Identities = 34/71 (47%), Positives = 50/71 (69%)
 Frame = -2

Query: 159 RVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSI 218
           R   + + D   ++DG +WRKYGQK+ K +  PR+YYRCT +  C V+K+V+R ++D  +
Sbjct: 496 RFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHS-NCRVKKRVERLSEDCRM 320

Query: 219 LITTYEGTHNH 229
           +ITTYEG HNH
Sbjct: 319 VITTYEGRHNH 287


>TC15775 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcription
           factor 17 (WRKY DNA-binding protein 17), partial (53%)
          Length = 1284

 Score = 77.4 bits (189), Expect = 5e-15
 Identities = 35/77 (45%), Positives = 44/77 (56%)
 Frame = +3

Query: 156 KRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADD 215
           K +RV   +        D   WRKYGQK  KG P PR YY+C+    CP RK V+R  DD
Sbjct: 690 KTIRVPAVSSKVADIPADEYSWRKYGQKPIKGTPYPRGYYKCSTVRGCPARKHVERATDD 869

Query: 216 MSILITTYEGTHNHPLQ 232
            ++LI TYE  H+H +Q
Sbjct: 870 PAMLIVTYEDEHDHGIQ 920


>TC11124 similar to UP|Q8H9D7 (Q8H9D7) WRKY-type DNA binding protein,
           partial (45%)
          Length = 517

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 33/62 (53%), Positives = 41/62 (65%)
 Frame = +1

Query: 173 DGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQ 232
           DG +WRKYGQK  K N  PR+YYRCT    C V+K V R   D  +++TTYEG H HP++
Sbjct: 1   DGYRWRKYGQKAVKNNKFPRSYYRCT-HHGCHVKKPVPRLTQDEGVVVTTYEGVHTHPIE 177

Query: 233 VT 234
            T
Sbjct: 178 KT 183


>AV423663 
          Length = 447

 Score = 75.1 bits (183), Expect = 3e-14
 Identities = 37/91 (40%), Positives = 51/91 (55%), Gaps = 3/91 (3%)
 Frame = +1

Query: 155 AKRVRVSVRAKCDTPTMN---DGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQR 211
           +KR +   +  C     N   D   WRKYGQK  KG+P PR YYRC+ +  C  RKQV+R
Sbjct: 19  SKRRKNQFKKVCQVSAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVER 198

Query: 212 CADDMSILITTYEGTHNHPLQVTASAMAYTT 242
              + ++ I TY G HNHP     +++A +T
Sbjct: 199 NKSEPAMFIVTYTGEHNHPAPTHRNSLAGST 291


>BI420856 
          Length = 354

 Score = 74.3 bits (181), Expect = 5e-14
 Identities = 42/101 (41%), Positives = 64/101 (62%)
 Frame = +2

Query: 1   MGEVKEENERLKTMLSRVEKDYNSLQLRFFDIVNKDVSMKDIEDSSTNSHEEIDEEPEFV 60
           MGEV+EEN+RLK  L+++  +Y    L+F DI  +D + K+I  +  N+H+EI EE + V
Sbjct: 35  MGEVREENQRLKMSLNKIMNEYRIFVLQFQDIAKQDQTKKNIV-ADDNNHQEIMEESDLV 211

Query: 61  SLCLGRSPNEYKKDAKNIENPNKPKEKEDMEVNLSLGLDSK 101
           SL LGR P+    + +NI+     K+ E+   +L+LGLD K
Sbjct: 212 SLSLGRVPS----NPRNIKVSKPLKDHEEFNEDLTLGLDCK 322


>TC11734 similar to UP|WR49_ARATH (Q9FHR7) Probable WRKY transcription
           factor 49 (WRKY DNA-binding protein 49), partial (28%)
          Length = 1009

 Score = 73.6 bits (179), Expect = 8e-14
 Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
 Frame = +3

Query: 130 KGAIFSTNKSTKVINVNDEISEL---LPAKRVRVSVRAKCDTPTM-NDGCQWRKYGQKIA 185
           + A+  T   T+  + +  +S L   L     + +++ KC    M +DG +WRKYGQK  
Sbjct: 195 ENALSVTTNKTEHFSASARVSILERNLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSI 374

Query: 186 KGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNH 229
           K +P PR+YYRCT  P C  +KQV+R  +D   LI TYEG H H
Sbjct: 375 KNSPNPRSYYRCT-NPRCSAKKQVERSNEDPETLIITYEGLHLH 503


>TC15932 similar to UP|WR61_ARATH (Q8VWV6) Probable WRKY transcription
           factor 61 (WRKY DNA-binding protein 61), partial (6%)
          Length = 454

 Score = 72.8 bits (177), Expect = 1e-13
 Identities = 47/105 (44%), Positives = 64/105 (60%)
 Frame = -2

Query: 225 GTHNHPLQVTASAMAYTTSAAASMMVSGSSTSSSSSHQNQNIHHNNSTSFGNSPTQINGL 284
           GTHNHPL V+A+AM  +TSAA SM+ SGS TS  + H         + S G++ T   GL
Sbjct: 336 GTHNHPLPVSATAMDSSTSAALSML*SGSYTSQPTGH--------CAASMGSASTMFIGL 181

Query: 285 NFNHHQFEQSRTPKQHFFIPPNHNNLFPTITLDLTSPSSLSSSNI 329
           NF+   + QSR  +   F+P    +LFPTITLDLT  +S S +++
Sbjct: 180 NFS--SYNQSRATQA--FLPTPTPHLFPTITLDLT*TTSESWNSL 58


>TC8298 homologue to UP|Q9SXP4 (Q9SXP4) DNA-binding protein NtWRKY3,
           partial (16%)
          Length = 514

 Score = 56.6 bits (135), Expect(2) = 1e-09
 Identities = 23/47 (48%), Positives = 30/47 (62%)
 Frame = +3

Query: 190 CPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQVTAS 236
           C R YY+C+    CP RK V+R  DD ++LI TYEG H H +  TA+
Sbjct: 153 CCRGYYKCSSEKGCPARKHVERAQDDPNMLIVTYEGEHRHLITTTAA 293



 Score = 23.1 bits (48), Expect(2) = 1e-09
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 180 YGQKIAKGNPCPR 192
           YGQK  KG+P PR
Sbjct: 1   YGQKPIKGSPYPR 39


>TC11031 homologue to UP|WR65_ARATH (Q9LP56) Probable WRKY transcription
           factor 65 (WRKY DNA-binding protein 65), partial (15%)
          Length = 453

 Score = 53.9 bits (128), Expect = 6e-08
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
 Frame = +3

Query: 153 LPAKRVRVS-VRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVR 206
           +P K    S ++A+ +TP  +D   WRKYGQK  KG+P PR YYRC+ +  CP R
Sbjct: 291 IPIKETEGSRLKAENNTPP-SDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPAR 452


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.310    0.126    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,959,135
Number of Sequences: 28460
Number of extensions: 161826
Number of successful extensions: 1254
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of query: 537
length of database: 4,897,600
effective HSP length: 95
effective length of query: 442
effective length of database: 2,193,900
effective search space: 969703800
effective search space used: 969703800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)