BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139354.6 - phase: 0
(342 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15915 similar to UP|Q9SFE9 (Q9SFE9) T26F17.9 (GONST5 golgi nuc... 238 8e-64
TC10652 similar to UP|Q9SFE9 (Q9SFE9) T26F17.9 (GONST5 golgi nuc... 140 4e-34
TC14096 homologue to UP|CPTR_PEA (P21727) Triose phosphate/phosp... 101 2e-22
TC13454 homologue to UP|O64910 (O64910) Glucose-6-phosphate/phos... 83 6e-17
AW720113 81 3e-16
TC16569 similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruv... 80 4e-16
AV767296 78 2e-15
BP049869 72 1e-13
TC14931 similar to UP|Q9M9Z3 (Q9M9Z3) F4H5.5 protein, partial (55%) 63 8e-11
BP046819 63 8e-11
TC15637 similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruv... 57 4e-09
TC8887 51 3e-07
TC17295 similar to UP|Q94JT2 (Q94JT2) AT5g17630/K10A8_110, parti... 49 9e-07
TC19748 weakly similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoen... 42 1e-04
TC12947 similar to UP|CPT2_BRAOL (P52178) Triose phosphate/phosp... 39 0.002
TC11969 similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruv... 38 0.003
TC13047 similar to UP|Q9SXF7 (Q9SXF7) Amino acid transporter-lik... 30 0.45
TC9502 similar to UP|Q8LG88 (Q8LG88) Sodium-dicarboxylate cotran... 29 1.3
TC11823 similar to UP|Q9FNV7 (Q9FNV7) Auxin-repressed protein, p... 29 1.3
BP077042 28 1.7
>TC15915 similar to UP|Q9SFE9 (Q9SFE9) T26F17.9 (GONST5 golgi nucleotide
sugar transporter), partial (38%)
Length = 545
Score = 238 bits (608), Expect = 8e-64
Identities = 113/134 (84%), Positives = 124/134 (92%), Gaps = 3/134 (2%)
Frame = +2
Query: 212 LEGNGILEWFSIHPYPWAAMIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVA 271
LEGNG++EW + HPYPW A+ IIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVA
Sbjct: 2 LEGNGVIEWLNTHPYPWLALTIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVA 181
Query: 272 VLISWLIFRNPISYMNAVGCAITLVGCTFYGYVRNMISQQPAVPGTPRTPRTPR---SKM 328
VL+SWLIFRNPISY+NAVGC ITLVGCTFYGYVR+M+SQQ +PGTPRTPRTPR SKM
Sbjct: 182 VLVSWLIFRNPISYLNAVGCGITLVGCTFYGYVRHMLSQQQPIPGTPRTPRTPRTPGSKM 361
Query: 329 ELLPLVNDKLDDKV 342
ELLPLVNDKL++KV
Sbjct: 362 ELLPLVNDKLENKV 403
>TC10652 similar to UP|Q9SFE9 (Q9SFE9) T26F17.9 (GONST5 golgi nucleotide
sugar transporter), partial (28%)
Length = 595
Score = 140 bits (352), Expect = 4e-34
Identities = 66/87 (75%), Positives = 74/87 (84%)
Frame = +3
Query: 238 GVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLISWLIFRNPISYMNAVGCAITLVG 297
GVLAFCLNFSIFYVIHS AVTFNVAGNLKVAVAVL+SWLIFRNPISYMN++GCAITL+G
Sbjct: 3 GVLAFCLNFSIFYVIHSPPAVTFNVAGNLKVAVAVLVSWLIFRNPISYMNSIGCAITLIG 182
Query: 298 CTFYGYVRNMISQQPAVPGTPRTPRTP 324
CTFYGYVR+M+S + G + P
Sbjct: 183 CTFYGYVRHMLSLHASSSGNSSDTQDP 263
Score = 67.4 bits (163), Expect = 3e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +1
Query: 312 PAVPGTPRTPRTPRSKMELLPLVNDKLDDKV 342
PAVPGTPRTPRTPRSKMELLPLVNDKLDDKV
Sbjct: 226 PAVPGTPRTPRTPRSKMELLPLVNDKLDDKV 318
>TC14096 homologue to UP|CPTR_PEA (P21727) Triose phosphate/phosphate
translocator, chloroplast precursor (CTPT) (P36) (E30),
partial (96%)
Length = 1564
Score = 101 bits (251), Expect = 2e-22
Identities = 79/305 (25%), Positives = 141/305 (45%), Gaps = 14/305 (4%)
Frame = +1
Query: 21 WWAFNVTVIIMNKWIFQKLDFKFPLSVSCIHFICSAIGAYV--VIKVLKLKPLISVDPQD 78
W+ NV I+NK I+ F +P VS IH + V + + K P+ S +
Sbjct: 367 WYFLNVIFNILNKKIYNY--FPYPYFVSVIHLFVGVVYCLVSWTVGLPKRAPIDS----N 528
Query: 79 RWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWA 138
+ + + P++ + V NVS + VSF T+K+ P + + +W
Sbjct: 529 QLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPITLWL 708
Query: 139 SLVPIVGGILLTSITELSFNMFGFCAALFGCLATSTKTILAEALLHGYKFDSINTVYHMA 198
SL P+V G+ + S+TELSFN GF +A+ ++ + ++I ++ + DS N +++
Sbjct: 709 SLAPVVIGVSMASLTELSFNWLGFISAMISNISFTYRSIYSKKAM--TDMDSTNLYAYIS 882
Query: 199 PFATLIMVFPALLLEGNGILEWFSIHPYPWAAMIIIFSSGVLAFCLNF---SIFYVIHST 255
A ++ + PA++LEG +L+ H + A I G++ F + +FY +++
Sbjct: 883 IIALIVCLPPAIILEGPVLLK----HGFNDA----IAKVGLVKFVTDLFWVGMFYHLYNQ 1038
Query: 256 TA---------VTFNVAGNLKVAVAVLISWLIFRNPISYMNAVGCAITLVGCTFYGYVRN 306
A +T V LK + S +IF N IS +G AI + G Y ++
Sbjct: 1039VATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNRISTQTGIGTAIAIAGVAIYSLIKA 1218
Query: 307 MISQQ 311
I ++
Sbjct: 1219RIEEE 1233
>TC13454 homologue to UP|O64910 (O64910)
Glucose-6-phosphate/phosphate-translocator precursor,
partial (56%)
Length = 674
Score = 83.2 bits (204), Expect = 6e-17
Identities = 55/214 (25%), Positives = 105/214 (48%), Gaps = 9/214 (4%)
Frame = +2
Query: 78 DRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIW 137
D W+ +FP++ I V VS+ + VSF IKS PA +V++ + + F +++
Sbjct: 50 DFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFILGESFPAQVY 229
Query: 138 ASLVPIVGGILLTSITELSFNMFGFCAALFGCLATSTKTILAEALLHGYKFDSINTVYHM 197
SL+PI+GG L ++TEL+FNM GF A+ LA + I ++ + G +N +
Sbjct: 230 LSLLPIIGGCALAAVTELNFNMVGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACL 409
Query: 198 APFATLIMVFPALLLEGNGILEWFSIHPYPWAAMIIIFSSGVLAFCLNFSIFYVIHSTTA 257
+ + I+ A+ +EG + W + W + ++ + S+FY +++ +
Sbjct: 410 SILSLAILTPFAIAVEGPQM--WAA----GWQTAVSQVGPQLVWWVAAQSVFYHLYNQVS 571
Query: 258 ---------VTFNVAGNLKVAVAVLISWLIFRNP 282
+TF++ +K ++ S +IF+ P
Sbjct: 572 YMSLDEISPLTFSIGNTMKRISVIVSSIIIFQTP 673
>AW720113
Length = 512
Score = 80.9 bits (198), Expect = 3e-16
Identities = 33/92 (35%), Positives = 62/92 (66%)
Frame = +2
Query: 21 WWAFNVTVIIMNKWIFQKLDFKFPLSVSCIHFICSAIGAYVVIKVLKLKPLISVDPQDRW 80
W++ N+ V+++NK++ FK+P+ ++ H ++ +YV I LK+ PL ++ + ++
Sbjct: 236 WYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLFSYVAIAWLKVVPLQTIRSRVQF 415
Query: 81 RRIFPMSFVFCINIVLGNVSLRYIPVSFMQTI 112
+I +S VFC+++V GN+SLRY+PVSF Q +
Sbjct: 416 FKIATLSLVFCVSVVFGNISLRYLPVSFNQAV 511
>TC16569 similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruvate
translocator protein-like, partial (46%)
Length = 827
Score = 80.5 bits (197), Expect = 4e-16
Identities = 45/147 (30%), Positives = 78/147 (52%), Gaps = 2/147 (1%)
Frame = +3
Query: 157 FNMFGFCAALFGCLATSTKTILAEALL--HGYKFDSINTVYHMAPFATLIMVFPALLLEG 214
F++FGF + + K+++ +L K +S+N + +MAP A +I++ L +EG
Sbjct: 3 FHLFGFLVCVGSTAGRALKSVVQGIILTSESEKLNSMNLLLYMAPMAAMILLPFTLYIEG 182
Query: 215 NGILEWFSIHPYPWAAMIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLI 274
N + ++ + +A+ +N + F V T+A+T V GN K AVA ++
Sbjct: 183 NVAAVTLEKVKGDRFIVFLLVGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVV 362
Query: 275 SWLIFRNPISYMNAVGCAITLVGCTFY 301
S LIFRNP++ M G A+T++G Y
Sbjct: 363 SVLIFRNPVTVMGITGFAVTIMGVLLY 443
>AV767296
Length = 490
Score = 77.8 bits (190), Expect = 2e-15
Identities = 41/105 (39%), Positives = 62/105 (59%)
Frame = -3
Query: 234 IFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLISWLIFRNPISYMNAVGCAI 293
IF SGV++F LN +F V+ +T++VT VAGNLK + +S IFRNP + NA+GC I
Sbjct: 452 IFISGVISFALNVMLFIVLKATSSVTVTVAGNLKTVAVIALSVAIFRNPFTVFNALGCLI 273
Query: 294 TLVGCTFYGYVRNMISQQPAVPGTPRTPRTPRSKMELLPLVNDKL 338
+ GC +YG ++ ++ A GT R+ + +V+ KL
Sbjct: 272 AIGGCMWYG----LLPKKWATMGTLEETAPSRAPAAVSEVVDHKL 150
>BP049869
Length = 532
Score = 72.4 bits (176), Expect = 1e-13
Identities = 45/171 (26%), Positives = 93/171 (54%), Gaps = 3/171 (1%)
Frame = -2
Query: 27 TVIIMNKWIFQK--LDFKFPLSVSCIHF-ICSAIGAYVVIKVLKLKPLISVDPQDRWRRI 83
TVI+ NK+I + ++ +P+S++ IH CS++ AY++++V KL +S+ + + +
Sbjct: 519 TVIVYNKYILDRKMYNWPYPISLTMIHMGFCSSL-AYLLVRVFKLVEPVSMSRELYLKSV 343
Query: 84 FPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPI 143
P+ ++ +++ N + Y+ VSF+Q +K+ P + L ++ F A++V I
Sbjct: 342 VPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPVAVYSIGVLFKKESFRNETMANMVSI 163
Query: 144 VGGILLTSITELSFNMFGFCAALFGCLATSTKTILAEALLHGYKFDSINTV 194
G+ + + E F++FG L +T+ +L + LL+ K S+N +
Sbjct: 162 SMGVAVAAYGEAKFDVFGVSLQLLAVAFEATRLVLIQILLYS-KGISLNPI 13
>TC14931 similar to UP|Q9M9Z3 (Q9M9Z3) F4H5.5 protein, partial (55%)
Length = 820
Score = 62.8 bits (151), Expect = 8e-11
Identities = 36/137 (26%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Frame = +1
Query: 201 ATLIMVFPALLLEGNGILEWFSIHPYPWAAMIIIFS--SGVLAFCLNFSIFYVIHSTTAV 258
ATL++ P L + +L ++ + + + F S +++ +NFS F VI T+ V
Sbjct: 22 ATLLICGPYL----DKLLTNLNVFAFKYTTQVTAFIVLSCLISISVNFSTFLVIGKTSPV 189
Query: 259 TFNVAGNLKVAVAVLISWLIFRNPISYMNAVGCAITLVGCTFYGYVRNMISQQPAVPGTP 318
T+ V G+LK + + +++ R+P S+ N +G + ++G Y Y ++ SQQ AV
Sbjct: 190 TYQVLGHLKTCLVLAFGYILLRDPFSWRNILGILVAMIGMILYSYYCSLESQQKAVEAAA 369
Query: 319 RTPRTPRSKMELLPLVN 335
+ + ++ + PL++
Sbjct: 370 QASQAREAESD--PLIS 414
>BP046819
Length = 459
Score = 62.8 bits (151), Expect = 8e-11
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -3
Query: 232 IIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLISWLIFRNPISYMNAVGC 291
I++ + V A+ N + F V T+A+T V GN K AVAV+IS LIFRNP++++ G
Sbjct: 406 ILLLLNSVTAYAANLTXFLVTKHTSALTLQVLGNAKGAVAVVISILIFRNPVTFVGMAGY 227
Query: 292 AITLVGCTFYG 302
+T++G YG
Sbjct: 226 TVTVLGVAAYG 194
>TC15637 similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruvate
translocator protein-like, partial (32%)
Length = 680
Score = 57.0 bits (136), Expect = 4e-09
Identities = 30/69 (43%), Positives = 45/69 (64%)
Frame = +2
Query: 233 IIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLISWLIFRNPISYMNAVGCA 292
++F+S LA+ +N + F V T+A+T V GN K AVAV++S LIF+NP+S +G A
Sbjct: 68 LLFNS-TLAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFKNPVSVTGMMGYA 244
Query: 293 ITLVGCTFY 301
+T+ G Y
Sbjct: 245 LTVFGVILY 271
>TC8887
Length = 674
Score = 50.8 bits (120), Expect = 3e-07
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 226 YPWAAMIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLISWLIFRN-PIS 284
+ + +I+ S LAF LN+SIF +AVT + GNLK + + W+IF P
Sbjct: 13 FSFLGQVILLFSCTLAFFLNYSIFLYTTLNSAVTQTICGNLKDLFTIGLGWIIFGGLPFD 192
Query: 285 YMNAVGCAITLVGCTFYGYVR 305
+ N +G + G Y Y +
Sbjct: 193 FWNVIGQLLGFAGSGLYAYYK 255
>TC17295 similar to UP|Q94JT2 (Q94JT2) AT5g17630/K10A8_110, partial (28%)
Length = 566
Score = 49.3 bits (116), Expect = 9e-07
Identities = 31/112 (27%), Positives = 53/112 (46%), Gaps = 5/112 (4%)
Frame = +3
Query: 195 YHMAPFATLIMVFP-ALLLEGN----GILEWFSIHPYPWAAMIIIFSSGVLAFCLNFSIF 249
Y +L +FP A+ +EG+ G + P I + SGV N S +
Sbjct: 3 YGFITILSLFYLFPVAIFVEGSQWIPGYYKAIETIGKPSTFYIWVLVSGVFYHLYNQSSY 182
Query: 250 YVIHSTTAVTFNVAGNLKVAVAVLISWLIFRNPISYMNAVGCAITLVGCTFY 301
+ + +TF+V +K V ++ + L+FRNP+ +N +G AI ++G Y
Sbjct: 183 QALDEISPLTFSVGNTMKRVVVIVATILVFRNPVRPLNGLGSAIAILGTFLY 338
>TC19748 weakly similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruvate
translocator protein-like, partial (22%)
Length = 427
Score = 42.4 bits (98), Expect = 1e-04
Identities = 17/67 (25%), Positives = 38/67 (56%)
Frame = +3
Query: 18 ILQWWAFNVTVIIMNKWIFQKLDFKFPLSVSCIHFICSAIGAYVVIKVLKLKPLISVDPQ 77
I W+ N+ V+++NK++ +++P+ ++ +H I + +Y I L L PL + +
Sbjct: 222 IASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCSAYSYGAINFLDLVPLQHIHSK 401
Query: 78 DRWRRIF 84
++ +IF
Sbjct: 402 KQFLKIF 422
>TC12947 similar to UP|CPT2_BRAOL (P52178) Triose phosphate/phosphate
translocator, non-green plastid, chloroplast precursor
(CTPT), partial (23%)
Length = 544
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +1
Query: 237 SGVLAFCLNF--SIFY-VIHSTTAVTFNVAGNLKVAVAVLISWLIFRNPISYMNAVGCAI 293
S + AFC + + Y ++ + VT +V +K V ++ S + F+ P+S +NA+G AI
Sbjct: 85 SVLAAFCFHAYQQVSYGILQKVSPVTHSVGNCVKRVVVIVSSVIFFQYPVSPVNALGTAI 264
Query: 294 TLVGCTFY 301
LVG Y
Sbjct: 265 ALVGVFLY 288
>TC11969 similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruvate
translocator protein-like, partial (14%)
Length = 503
Score = 37.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (70%)
Frame = +1
Query: 267 KVAVAVLISWLIFRNPISYMNAVGCAITLVGCTFY 301
K AVAV++S LIFRNP+S +G ++T++G Y
Sbjct: 1 KGAVAVVVSILIFRNPVSVTGMMGYSLTVLGVVLY 105
>TC13047 similar to UP|Q9SXF7 (Q9SXF7) Amino acid transporter-like protein
1, partial (7%)
Length = 416
Score = 30.4 bits (67), Expect = 0.45
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 309 SQQPAVPGTPRTPRTPRS 326
S+ P P TPRTPRTPR+
Sbjct: 236 SKTPKTPRTPRTPRTPRT 183
Score = 26.6 bits (57), Expect = 6.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 312 PAVPGTPRTPRTP 324
P P TPRTPRTP
Sbjct: 218 PRTPRTPRTPRTP 180
>TC9502 similar to UP|Q8LG88 (Q8LG88) Sodium-dicarboxylate
cotransporter-like, partial (42%)
Length = 1253
Score = 28.9 bits (63), Expect = 1.3
Identities = 24/107 (22%), Positives = 45/107 (41%)
Frame = +2
Query: 201 ATLIMVFPALLLEGNGILEWFSIHPYPWAAMIIIFSSGVLAFCLNFSIFYVIHSTTAVTF 260
A L+ + P + EG +++W PW+ ++++ + +A + S + S
Sbjct: 167 AVLLFIIPNMKKEGEKLMDWNECKKLPWSLILLLGAGFAIADGVQSSGLADVLSRALDFL 346
Query: 261 NVAGNLKVAVAVLISWLIFRNPISYMNAVGCAITLVGCTFYGYVRNM 307
+ A L +A AV + I I+ +A TL+ Y R M
Sbjct: 347 DDAPYLAIAPAVSLMSSIITEFITSNDATA---TLIIPLLYHIARTM 478
>TC11823 similar to UP|Q9FNV7 (Q9FNV7) Auxin-repressed protein, partial
(12%)
Length = 477
Score = 28.9 bits (63), Expect = 1.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 301 YGYVRNMISQQPAVPGTPRTP 321
YG+ M S +P+ P TPRTP
Sbjct: 8 YGHHHGMASSRPSTPTTPRTP 70
>BP077042
Length = 389
Score = 28.5 bits (62), Expect = 1.7
Identities = 11/41 (26%), Positives = 24/41 (57%), Gaps = 1/41 (2%)
Frame = +3
Query: 265 NLKVAVAVLISWLIFRNP-ISYMNAVGCAITLVGCTFYGYV 304
N ++ +++++SW +FRNP S+ + + C FY ++
Sbjct: 150 NRQLHISIVLSWTLFRNPWFSFSIFIITTFPCILCNFYPFM 272
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.331 0.142 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,594,740
Number of Sequences: 28460
Number of extensions: 124062
Number of successful extensions: 991
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of query: 342
length of database: 4,897,600
effective HSP length: 91
effective length of query: 251
effective length of database: 2,307,740
effective search space: 579242740
effective search space used: 579242740
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC139354.6