TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139343.3 + phase: 0 /pseudo
         (216 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9229 similar to UP|Q9SKU1 (Q9SKU1) At2g20760 protein (At2g2076...    28  1.6
TC8113 weakly similar to UP|O23213 (O23213) Sugar transporter li...    26  4.7
AV769546                                                               26  6.1

>TC9229 similar to UP|Q9SKU1 (Q9SKU1) At2g20760 protein
           (At2g20760/F5H14.27), partial (31%)
          Length = 756

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 13/34 (38%), Positives = 16/34 (46%)
 Frame = +1

Query: 105 EQAKSEGYKVESVIVADDCAIPPPLEMVGRRGLA 138
           E     GY  E V V+D   +PPP +M    G A
Sbjct: 358 ENGNGNGYGDEGVFVSDGPVLPPPGDMEPEEGYA 459


>TC8113 weakly similar to UP|O23213 (O23213) Sugar transporter like
           protein, partial (93%)
          Length = 1865

 Score = 26.2 bits (56), Expect = 4.7
 Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 2/67 (2%)
 Frame = +2

Query: 33  VAIISGGGSGHEPAHAGFVGEGMLTAAICGDVFASPTVEAILAGIRAVTGPMGCLLIVK- 91
           V+IISG  +G       F+ E         D+  S T + +LAGI  +   +GCL   K 
Sbjct: 146 VSIISGYDTGVMSGALLFIKE---------DIGISDTQQEVLAGILNICALVGCLAAGKT 298

Query: 92  -NYTGDR 97
            +Y G R
Sbjct: 299 SDYIGRR 319


>AV769546 
          Length = 417

 Score = 25.8 bits (55), Expect = 6.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 6   SLQYLDGYPNVKVVFRKDVYPGPPYDKVAIISGGGSGHE 44
           S+ Y  G  N+KVVF K    G    K  +++G  SG+E
Sbjct: 225 SVPYYCGCLNIKVVFVKLRKEGASTCKADLLTGESSGNE 109


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,561,772
Number of Sequences: 28460
Number of extensions: 30060
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of query: 216
length of database: 4,897,600
effective HSP length: 86
effective length of query: 130
effective length of database: 2,450,040
effective search space: 318505200
effective search space used: 318505200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)