TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139343.10 + phase: 0 /pseudo
         (1612 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU252175                                                               31  1.8
BI419703                                                               30  3.0
TC18297 homologue to UP|Q9M060 (Q9M060) Eukaryotic translation i...    29  5.1

>AU252175 
          Length = 350

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/31 (41%), Positives = 18/31 (57%)
 Frame = +3

Query: 597 LMRVSSLQLSTLNGLPILYLCQRRMVKSGCV 627
           +M++    LS LN LPILY C R  +   C+
Sbjct: 207 VMKIGRTHLSCLNSLPILYHCVRLSIMINCL 299


>BI419703 
          Length = 556

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 31/104 (29%), Positives = 47/104 (44%), Gaps = 13/104 (12%)
 Frame = +2

Query: 1391 ARSLPTMVQT*TTMWCKLFVKNSKLSIITLLLIDL----R*MVQL-RPPTRISRELSRRW 1445
            A   PT   +  TM+  +FV N  L   T  ++ +    R*+ QL   P R  + LS   
Sbjct: 44   ATHAPTFATSHQTMFL-VFVTNPSLPDSTTTIVQIP*SAR*IAQLVENPMRWIKLLSMAM 220

Query: 1446 *PLTRTGMR--------CYPMLCMATVLQCAVQPRQPLSLLYMV 1481
              L ++ M         C    C A + +C  +PR+PL+L Y+V
Sbjct: 221  VGLKKSVMMTTLRVVLIC*SDSCRACLGKCLSEPRRPLALFYLV 352


>TC18297 homologue to UP|Q9M060 (Q9M060) Eukaryotic translation initiation
           factor 6 (EIF-6)-like protein (At3g55620), partial (41%)
          Length = 519

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +2

Query: 345 LGCH*HSLN-HACF*VIYLVA*VSCFFKITILSLCPKRE*YFL*GHVCFGIAVD**KICR 403
           L C  HS + + C    ++V  + C   I  + +CP      +*GHVCFG+  +**K C 
Sbjct: 347 LDCLMHSCSVNVCIFQSWIVLLIDC--DII*IYVCP*-----I*GHVCFGL--N**KTCA 499

Query: 404 FFHDCFFS 411
           FF   FFS
Sbjct: 500 FF---FFS 514


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.352    0.154    0.547 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,048,651
Number of Sequences: 28460
Number of extensions: 551373
Number of successful extensions: 6094
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4480
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 1411
Number of HSP's gapped (non-prelim): 4919
length of query: 1612
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1509
effective length of database: 1,966,220
effective search space: 2967025980
effective search space used: 2967025980
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 62 (28.5 bits)