TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138580.8 - phase: 0 
         (268 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP082590                                                              152  6e-38
CB827150                                                               76  7e-15
TC18322 similar to GB|AAP13390.1|30023714|BT006282 At5g44170 {Ar...    47  4e-06
TC8113 weakly similar to UP|O23213 (O23213) Sugar transporter li...    28  1.2
CB828423                                                               28  2.1

>BP082590 
          Length = 364

 Score =  152 bits (384), Expect = 6e-38
 Identities = 74/80 (92%), Positives = 78/80 (97%)
 Frame = -1

Query: 189 ILGSDVVYSEGAVVDLLETLGQLSGPNTTIFLAGELRNDAILEYFLEAAMNDFTIGRVDQ 248
           ++GSDVVYSE AVVDL+ETLGQLSGPNTTIFLAGELRNDAILEYFLEAAMNDFTIGRVDQ
Sbjct: 358 VVGSDVVYSENAVVDLVETLGQLSGPNTTIFLAGELRNDAILEYFLEAAMNDFTIGRVDQ 179

Query: 249 TLWHPDYHSNRVVLYVLVKK 268
           TLWHP+Y SNRVVLYVLVKK
Sbjct: 178 TLWHPEYRSNRVVLYVLVKK 119


>CB827150 
          Length = 553

 Score = 75.9 bits (185), Expect = 7e-15
 Identities = 42/128 (32%), Positives = 72/128 (55%), Gaps = 5/128 (3%)
 Frame = +1

Query: 38  LLWG--IQQPTLSKPNAFVAQSSLQLRLDSCGHSLSILQSPSSLGKPGVTGSVMWDSGIV 95
           L WG  +    L + +     ++ ++ L+  GH L   Q P+S       G+ +WD+ +V
Sbjct: 148 LYWGFFLADCDLMELDRLNTPTTFEMPLEVLGHELQFSQDPNSKH----LGTTVWDASLV 315

Query: 96  LGKFLEHSVDSGMLV---LQGKKIVELGSGCGLVGCIAALLGGEVILTDLPDRMRLLRKN 152
             KFLE +   G      L+GK+++ELG+GCG+ G   ALLG +V++TD  + + LL++N
Sbjct: 316 FAKFLERNCRKGRFSPAKLKGKRVIELGAGCGVSGFGMALLGCDVVVTDQKEVLPLLQRN 495

Query: 153 IETNMKHI 160
           +E N+  +
Sbjct: 496 VERNVSRV 519


>TC18322 similar to GB|AAP13390.1|30023714|BT006282 At5g44170 {Arabidopsis
           thaliana;}, partial (41%)
          Length = 427

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
 Frame = +3

Query: 86  GSVMWDSGIVLGKFLEHSVDSG---------MLVLQGKKIVELGSGCGLVGCIAALLG-G 135
           G+ +W   ++L KF E    +          +L   GK+ VELG GCG+ G    LLG  
Sbjct: 108 GTSVWPCSLILVKFAERWAQTPPETPNPYTHLLNFAGKRAVELGCGCGVAGMGLYLLGLT 287

Query: 136 EVILTDLPDRMRLLRKNIETNMKHISLRGSITATELTWGD 175
           +++LTD+   M  L++N++ N     LR ++  + L W +
Sbjct: 288 DLVLTDIAPVMPALKRNLKVNKP--LLRKNLKYSILYWNN 401


>TC8113 weakly similar to UP|O23213 (O23213) Sugar transporter like
           protein, partial (93%)
          Length = 1865

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/42 (33%), Positives = 24/42 (56%)
 Frame = +2

Query: 90  WDSGIVLGKFLEHSVDSGMLVLQGKKIVELGSGCGLVGCIAA 131
           +D+G++ G  L    D G+   Q + +  + + C LVGC+AA
Sbjct: 164 YDTGVMSGALLFIKEDIGISDTQQEVLAGILNICALVGCLAA 289


>CB828423 
          Length = 512

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 14/41 (34%), Positives = 23/41 (55%)
 Frame = +1

Query: 91  DSGIVLGKFLEHSVDSGMLVLQGKKIVELGSGCGLVGCIAA 131
           D+G++ G  L    D G+   Q + +  + + C LVGC+AA
Sbjct: 370 DTGVMSGALLFIKEDIGISDTQQEVLAGILNICALVGCLAA 492


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,211,568
Number of Sequences: 28460
Number of extensions: 52426
Number of successful extensions: 243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of query: 268
length of database: 4,897,600
effective HSP length: 89
effective length of query: 179
effective length of database: 2,364,660
effective search space: 423274140
effective search space used: 423274140
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)