BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138579.4 + phase: 0
(835 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP066705 206 1e-53
TC11810 71 6e-18
TC11608 similar to GB|AAF68117.1|7715599|AC010793 F20B17.17 {Ara... 63 2e-13
BP083809 60 1e-09
BE122609 54 1e-07
BP035867 48 7e-06
AV774371 47 1e-05
TC19080 31 0.92
BP072266 30 1.2
BP063155 30 2.1
TC11813 similar to UP|Q8LJ68 (Q8LJ68) Protein phosphatase 2C-lik... 28 4.6
BP041497 28 6.0
TC10246 28 6.0
BG662257 28 6.0
TC15243 similar to UP|Q9ZV88 (Q9ZV88) F9K20.26 protein (At1g7870... 28 7.8
TC14684 28 7.8
TC18949 similar to UP|Q8S8Z5 (Q8S8Z5) Syringolide-induced protei... 28 7.8
>BP066705
Length = 511
Score = 206 bits (524), Expect = 1e-53
Identities = 95/105 (90%), Positives = 100/105 (94%)
Frame = +3
Query: 1 MAPIRSTGFVDPGWDHGIAQDERKKKVRCNYCGKVVSGGIYRLKQHLARVSGEVTYCEKA 60
MAP RSTGF+DPGWDHGIAQDERKKKVRCNYCGK+VSGG YRLKQHLARVSGEVTYCEKA
Sbjct: 195 MAPGRSTGFIDPGWDHGIAQDERKKKVRCNYCGKIVSGGRYRLKQHLARVSGEVTYCEKA 374
Query: 61 PEEVYLKMKENLEGCRSNKKQKQVDAQAYMNFQSNDDEDDEEQVG 105
PEEVYL+MKENLEGCR NKKQKQVD Q+YMNF SNDDEDD+EQVG
Sbjct: 375 PEEVYLRMKENLEGCRPNKKQKQVDVQSYMNFGSNDDEDDDEQVG 509
Score = 130 bits (328), Expect = 7e-31
Identities = 57/102 (55%), Positives = 76/102 (73%)
Frame = +3
Query: 123 LTPLRSLGYVDPGWEHGVAQDERKKKVKCSYCEKVVSGGINRFKQHLARIPGEVAPCKSA 182
+ P RS G++DPGW+HG+AQDERKKKV+C+YC K+VSGG R KQHLAR+ GEV C+ A
Sbjct: 195 MAPGRSTGFIDPGWDHGIAQDERKKKVRCNYCGKIVSGGRYRLKQHLARVSGEVTYCEKA 374
Query: 183 PEEVYLKIKENMKWHRTGKRHRQPEAKDLMPFYPKSDNEDDE 224
PEEVYL++KEN++ R K+ +Q + + M F D +DDE
Sbjct: 375 PEEVYLRMKENLEGCRPNKKQKQVDVQSYMNFGSNDDEDDDE 500
>TC11810
Length = 640
Score = 70.9 bits (172), Expect(2) = 6e-18
Identities = 33/36 (91%), Positives = 36/36 (99%)
Frame = +3
Query: 770 NRLSQKKLNDIMYVHYNLRLRECQVRKRSRESKSTS 805
NRLSQKKLNDI++VHYNLRLRECQVRKRSR+SKSTS
Sbjct: 3 NRLSQKKLNDIVFVHYNLRLRECQVRKRSRDSKSTS 110
Score = 37.4 bits (85), Expect(2) = 6e-18
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1
Query: 807 ENVLQEHLLGDWIVDTTAQSSDSDK 831
++VL EHLL DWIVD QS D DK
Sbjct: 115 DSVLLEHLLSDWIVDANVQSFDGDK 189
>TC11608 similar to GB|AAF68117.1|7715599|AC010793 F20B17.17 {Arabidopsis
thaliana;} , partial (22%)
Length = 739
Score = 63.2 bits (152), Expect(2) = 2e-13
Identities = 27/69 (39%), Positives = 46/69 (66%)
Frame = +3
Query: 709 FGTELAISTRTGLEPAAWWQQHGISCLELQRIAVRILSQTCSSFACEHDGSMYDQIYSKR 768
FG LA R+ + P WW+Q+G S LQR+A+RILSQ CS+ + + S + QI+S++
Sbjct: 18 FGCSLAKEARSTVAPWLWWEQYGDSAPGLQRVAIRILSQVCSTLSFQRQWSTFRQIHSEK 197
Query: 769 KNRLSQKKL 777
+N++ ++ +
Sbjct: 198 RNKIDREHI 224
Score = 29.6 bits (65), Expect(2) = 2e-13
Identities = 15/56 (26%), Positives = 30/56 (52%)
Frame = +1
Query: 771 RLSQKKLNDIMYVHYNLRLRECQVRKRSRESKSTSAENVLQEHLLGDWIVDTTAQS 826
RL + LND++Y++YNL+L Q+ +S E +++ + +W+ + S
Sbjct: 205 RLIENTLNDLVYINYNLKLAR-QMNAKSLEVDLLQFDDI---DMTSEWVEENETSS 360
>BP083809
Length = 369
Score = 60.1 bits (144), Expect = 1e-09
Identities = 31/89 (34%), Positives = 49/89 (54%), Gaps = 1/89 (1%)
Frame = +2
Query: 591 PILQVFQKVSSGESLSMPYIYNDLYRAKLAIKSIHGDDARKYEPFWKVIDRHCNSLFCHP 650
P++ V + S + +M YIY + +AK AI++ DD KY+ W +ID NS P
Sbjct: 98 PLVCVLRLADSEKKPAMGYIYEAMDKAKEAIRASLHDDKSKYQKIWDIIDNRWNSQLHRP 277
Query: 651 LYLAAYFLNPSYRYRQDFVSHS-DVVRGL 678
L+ A +FLNP Y Y + + +V +G+
Sbjct: 278 LHAAGHFLNPEYYYNDSELDYDFEVQKGV 364
>BE122609
Length = 356
Score = 53.5 bits (127), Expect = 1e-07
Identities = 35/113 (30%), Positives = 55/113 (47%), Gaps = 1/113 (0%)
Frame = +1
Query: 656 YFLNPSYRYRQDFVS-HSDVVRGLNECIVRLELDNMRRISASMQIPHYNSAQDDFGTELA 714
+FLNP + Y + ++++RGL E I E N +I + + Y FG + +
Sbjct: 19 HFLNPEFFYANPTMDLDAEIMRGLYEIIESDE--NTDKIPNELLV--Y*MVGGFFGMKAS 186
Query: 715 ISTRTGLEPAAWWQQHGISCLELQRIAVRILSQTCSSFACEHDGSMYDQIYSK 767
I RT + PA WW+ LQ AV++L TCSS C+ + ++ I K
Sbjct: 187 IKRRTTISPAEWWRSF*QHTPNLQSFAVKVLCLTCSSSGCKRNWRTFEHIKEK 345
>BP035867
Length = 482
Score = 47.8 bits (112), Expect = 7e-06
Identities = 25/86 (29%), Positives = 49/86 (56%)
Frame = -2
Query: 495 QKITKLIYNQIWLLNLMKSEFTHGNELLKPAGTQCASSFATLQNLLDHRVSLRRMFLSNK 554
+KIT I ++ L+ L++ THG +L++P T+ A+S+ L D+ + RMF S +
Sbjct: 481 RKITPYICSRTTLITLLQFH-THGRDLIRPGLTRFATSYLNLG*FHDNWGAFERMFASEE 305
Query: 555 WMSSRFSSSSQGKEVQKIVLNVTFWK 580
++ + GK++ ++++ FWK
Sbjct: 304 *QKRTYAKTRDGKKICDMIMDKLFWK 227
>AV774371
Length = 492
Score = 47.0 bits (110), Expect = 1e-05
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +3
Query: 147 KKVKCSYCEKVVSGGINRFKQHLARIPGEVAPCKSAPEEV---YLKIKENMKWHRTGKRH 203
KKV+C+YC GGINRFK HL + C S P++V + +I N + + KRH
Sbjct: 231 KKVRCNYCHSEFWGGINRFKLHLGCYGEDAGRCVSVPDDVMQWFKQIVSNAEDAKNKKRH 410
Score = 44.3 bits (103), Expect = 8e-05
Identities = 28/78 (35%), Positives = 35/78 (43%), Gaps = 2/78 (2%)
Frame = +3
Query: 25 KKVRCNYCGKVVSGGIYRLKQHLARVSGEVTYCEKAPEEVYLKMKENLEGCR--SNKKQK 82
KKVRCNYC GGI R K HL + C P++V K+ + NKK+
Sbjct: 231 KKVRCNYCHSEFWGGINRFKLHLGCYGEDAGRCVSVPDDVMQWFKQIVSNAEDAKNKKRH 410
Query: 83 QVDAQAYMNFQSNDDEDD 100
+D A ND E D
Sbjct: 411 LIDISA-----ENDVEVD 449
>TC19080
Length = 736
Score = 30.8 bits (68), Expect = 0.92
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 633 EPFWKVIDRHCNSLFCHPLYLAAYFLNPSYRYRQDFVSH 671
EPFWK C ++F P++++ +L P+ + F+SH
Sbjct: 354 EPFWKHFPWACLAVFFMPIHISVLYLGPTI-FVSIFISH 467
>BP072266
Length = 420
Score = 30.4 bits (67), Expect = 1.2
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Frame = -2
Query: 763 QIYSKRKNRLSQKKLNDIMYVHYNLRLR------ECQVRKRSRESKSTSAENVLQ----- 811
+I+ R S KKLND Y+H LRLR + K+ ES+ TS++ +
Sbjct: 395 EIFISTWKRKSTKKLNDPRYMHC-LRLRFGISEGARTMDKQRTESRETSSKRAID*NR*E 219
Query: 812 -EHLLGDWIVDTTAQSSDS 829
+LG W++ QS S
Sbjct: 218 VAEVLGFWLIRFMQQSHKS 162
>BP063155
Length = 462
Score = 29.6 bits (65), Expect = 2.1
Identities = 11/26 (42%), Positives = 19/26 (72%)
Frame = -3
Query: 58 EKAPEEVYLKMKENLEGCRSNKKQKQ 83
+K +++L + +NLEGCR KK+K+
Sbjct: 235 KKNSTKLHLPLPKNLEGCRKEKKEKE 158
>TC11813 similar to UP|Q8LJ68 (Q8LJ68) Protein phosphatase 2C-like protein,
partial (36%)
Length = 917
Score = 28.5 bits (62), Expect = 4.6
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 726 WWQQHGISCLELQRIAVRILSQTCSSFACEHDGSMYDQI-YSKRKNRLSQKKLN 778
W Q+HG S L LQ A + + S E G MY ++ Y R KK+N
Sbjct: 807 WCQRHGTSLLSLQHTAKTYIMKQGDSGLVEFLGKMYYKMPYHH*AKRCPCKKVN 646
>BP041497
Length = 546
Score = 28.1 bits (61), Expect = 6.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 727 WQQHGISCLELQRIAVRILSQTCSSFACEH 756
W H + LEL R + T +SF CEH
Sbjct: 475 WMVHAVLFLELDR*CI*ASLMTTASFCCEH 386
>TC10246
Length = 525
Score = 28.1 bits (61), Expect = 6.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 472 YCINQVLEDFLKIRCVEECMEKGQKITKLIYN 503
+CI Q+L +F + ECM K +K+ + +N
Sbjct: 226 FCIKQMLSEFYICNVMLECMHKRKKMLQFHFN 321
>BG662257
Length = 336
Score = 28.1 bits (61), Expect = 6.0
Identities = 14/30 (46%), Positives = 16/30 (52%)
Frame = -1
Query: 635 FWKVIDRHCNSLFCHPLYLAAYFLNPSYRY 664
FW + CN CHPL L + LNPS Y
Sbjct: 198 FWTLYYGSCN---CHPLLLPSR*LNPSIPY 118
>TC15243 similar to UP|Q9ZV88 (Q9ZV88) F9K20.26 protein
(At1g78700/F9K20_26), partial (58%)
Length = 917
Score = 27.7 bits (60), Expect = 7.8
Identities = 17/69 (24%), Positives = 34/69 (48%)
Frame = +1
Query: 219 DNEDDEYEQQEDTLHHMNKEALIDIDRRYSKDTGKTFKGMSSNTSPEPALRRSRLDSFYL 278
+ E ++ E++E+ H + D+ R + + + SP+ +L+RSRLD
Sbjct: 325 EGEREQQEEREEEESHSGE----DLRRFEDVRELQASEALRQQRSPQSSLQRSRLDR*TG 492
Query: 279 KHPTNQNLQ 287
+H +Q +Q
Sbjct: 493 RHHVSQGMQ 519
>TC14684
Length = 757
Score = 27.7 bits (60), Expect = 7.8
Identities = 11/36 (30%), Positives = 21/36 (57%)
Frame = +3
Query: 195 KWHRTGKRHRQPEAKDLMPFYPKSDNEDDEYEQQED 230
KW R + + MP +P +++ DD+YE++E+
Sbjct: 15 KWSRKSSFYSWSNPQS-MPLFPVTEDLDDDYEEEEE 119
>TC18949 similar to UP|Q8S8Z5 (Q8S8Z5) Syringolide-induced protein B13-1-1
(Fragment), partial (35%)
Length = 596
Score = 27.7 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 464 LFWTPCAIYCINQVLEDFLKIRCVEE 489
+FW C + CI VL + KIR V E
Sbjct: 518 VFWRRCLVKCIGYVLFECNKIRSVRE 441
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,084,826
Number of Sequences: 28460
Number of extensions: 209751
Number of successful extensions: 1172
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of query: 835
length of database: 4,897,600
effective HSP length: 98
effective length of query: 737
effective length of database: 2,108,520
effective search space: 1553979240
effective search space used: 1553979240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC138579.4