BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138579.1 - phase: 0
(881 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18710 128 5e-30
AV780705 115 4e-26
BP060613 105 3e-23
AV767121 83 2e-16
AV411435 72 3e-13
CN825238 68 7e-12
AV780221 67 9e-12
BE122611 54 1e-10
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 59 3e-09
TC12829 55 4e-08
BP085058 55 4e-08
AV428268 52 3e-07
AV780250 50 2e-06
AV418280 48 6e-06
BP076564 47 1e-05
AV412895 46 3e-05
BP049917 45 5e-05
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,... 45 5e-05
AV426428 44 9e-05
AV427022 44 9e-05
>TC18710
Length = 843
Score = 128 bits (321), Expect = 5e-30
Identities = 69/178 (38%), Positives = 98/178 (54%)
Frame = +2
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T + LIPK S+ +RPI+ C +YK+ +K+ RLK + IS QS F+ GR I
Sbjct: 308 TLVTLIPKVPHPESINQFRPISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQI 487
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + E H + KLD++KAYDR++W +L+ +L GFS WVK I
Sbjct: 488 QDNLLIVQEAFHAINRPGALGRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMI 667
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTI 179
M+ V V Y+ +N + ++ RGLRQGDP S YLF+ E LS LI+ + G +
Sbjct: 668 MILVSGVSYNYKINGVVGPKLLPQRGLRQGDPFSPYLFLFTMEVLSLLIQNSFNMGNL 841
>AV780705
Length = 524
Score = 115 bits (287), Expect = 4e-26
Identities = 54/156 (34%), Positives = 90/156 (57%)
Frame = -2
Query: 252 NILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSKAGREVLMKSM 311
N+L + G YLGLP++ GR+K + +I++++ +K+ W L++AG+EVL+K++
Sbjct: 523 NLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAI 344
Query: 312 LQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLAAHKNDGGMSF 371
+Q+IP+Y M+I P + C+ + ++ FWW G + K GG+ F
Sbjct: 343 IQAIPSYAMTIVHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVGF 164
Query: 372 KSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFP 407
+ L NLA L +Q WR +TNP+ L R+ K+ YFP
Sbjct: 163 RDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFP 56
Score = 45.1 bits (105), Expect = 5e-05
Identities = 22/77 (28%), Positives = 34/77 (43%)
Frame = -1
Query: 345 SGTQGRGLHWLSWDRLAAHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKAR 404
SG + RG+HW SWD++ GG + L + P L+ ++
Sbjct: 245 SGGRSRGIHWRSWDKMTLE*GKGGRGLQGLENSEPCLPS*ASLACANKPGGLVGTCHEIS 66
Query: 405 YFPRCDFLQSSLGHNPS 421
FP F+ ++LG NPS
Sbjct: 65 LFPYPSFMFAALGRNPS 15
>BP060613
Length = 378
Score = 105 bits (262), Expect = 3e-23
Identities = 47/108 (43%), Positives = 66/108 (60%)
Frame = +1
Query: 341 WWGHSGTQGRGLHWLSWDRLAAHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARI 400
WW GT RG+HW WD L K++GG+ FK + N A+L KQ WR + NPD L +I
Sbjct: 46 WWSSKGT--RGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQI 219
Query: 401 YKARYFPRCDFLQSSLGHNPSYVWRSLCNSKFILKAGSRWRIGDGDTI 448
KA YFP DFLQ++ S+VW SL + + +L +W++G G+T+
Sbjct: 220 LKALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETV 363
>AV767121
Length = 525
Score = 83.2 bits (204), Expect = 2e-16
Identities = 49/172 (28%), Positives = 86/172 (49%), Gaps = 2/172 (1%)
Frame = +2
Query: 291 INSWSSKCLSKAGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGR 350
++ W K +S GR L++S+L ++P +F+S F LP + +++ +F WG S + +
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 351 GLHWLSWDRLAAHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCD 410
+ + W + K GG+ K L FN A+LGK WR +T PD+L R+ +A+
Sbjct: 182 -IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQPD---- 346
Query: 411 FLQSSLGHNPSYVWRSLC--NSKFILKAGSRWRIGDGDTISIWNNKWIAGDI 460
S G + SLC ++ +G + +G+GD W+ W+ +
Sbjct: 347 --HYSCGSSWWNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWLGSGL 496
>AV411435
Length = 426
Score = 72.4 bits (176), Expect = 3e-13
Identities = 36/121 (29%), Positives = 56/121 (45%), Gaps = 6/121 (4%)
Frame = +3
Query: 505 IIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQKLLDISEFKVLGA------WDYIW 558
I++T + EDR W +GEYSV+S YR ++S + W IW
Sbjct: 3 IMQTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIW 182
Query: 559 NLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHCVLCNSADEDSLHLFFNCPSSSNI 618
+VP KV++ +WR A N +P + L+ + + C +CN ED H C + +
Sbjct: 183 GAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAV 362
Query: 619 W 619
W
Sbjct: 363 W 365
>CN825238
Length = 692
Score = 67.8 bits (164), Expect = 7e-12
Identities = 37/128 (28%), Positives = 63/128 (48%), Gaps = 2/128 (1%)
Frame = +3
Query: 481 MLQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAY-RLCM 539
++ + + W+V ++ +F ++T A I L + +W NG +SVRSAY + +
Sbjct: 300 LIPNARRWNVQLIDQLFPKETAAVIKSIPLGWRTTRNSCLWRWSRNGAFSVRSAYYNIQV 479
Query: 540 QKLLDISEFKVLG-AWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHCVLC 598
K + S W +W VP K+K+ +RVARNI+P R L+ + + C C
Sbjct: 480 AKEMQTSSSAASSFPWKKLWRTPVPNKMKHFAYRVARNIIPCRENLQRRGIAVQNECPTC 659
Query: 599 NSADEDSL 606
N +S+
Sbjct: 660 NHQIPESM 683
>AV780221
Length = 461
Score = 67.4 bits (163), Expect = 9e-12
Identities = 41/158 (25%), Positives = 75/158 (46%), Gaps = 8/158 (5%)
Frame = +3
Query: 307 LMKSMLQSIPTYFMSIFTLPTS-LCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLAAHKN 365
L++S+L ++P + + F LPT + + F+ G G+ + W+ W + K+
Sbjct: 9 LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFF-GREVEGGKKIAWVKWSTVCRPKD 185
Query: 366 DGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPSYVWR 425
+GG+ ++L +FN A+LGK WR + D L ++ +Y ++++ + S W
Sbjct: 186 EGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY-------KNAIPQSASSWWN 344
Query: 426 SLCNSKFILKAGSRW-------RIGDGDTISIWNNKWI 456
L +S G W RIG+G + WN W+
Sbjct: 345 DL-HSTCFEDGGGGWMQRGLCRRIGEGTEVKFWNENWL 455
>BE122611
Length = 357
Score = 53.9 bits (128), Expect(2) = 1e-10
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = -3
Query: 517 DRFVWNKENNGEYSVRSAYRLCMQKLLDISEFKVLGAWDYIWNLKVPPKVKNLVWRVARN 576
DR +W +E+NG YS +S Y L ++ + S F W +W P KV+ +W V RN
Sbjct: 331 DRILWTEESNGCYSAKSTYNLLIEDGGNESRF-----WSLVWKANAPEKVRFFLWLVGRN 167
Query: 577 ILPTRMR 583
LP+ R
Sbjct: 166 ALPSNAR 146
Score = 29.6 bits (65), Expect(2) = 1e-10
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 595 CVLCNSADEDSLHLFFNCPSSSNIW 619
C+ C + ED+ H+F CP S+ +W
Sbjct: 113 CIRCGAPSEDANHVFRWCPGSAWMW 39
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 58.9 bits (141), Expect = 3e-09
Identities = 41/131 (31%), Positives = 64/131 (48%)
Frame = -3
Query: 185 CNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRNGSQ 244
C N I SHL FAD+ +F ++ N+L + + SG N KSE+F +
Sbjct: 388 CQNEEI-SHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVFILVKETT 212
Query: 245 SKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSKAGR 304
Q I N+L + + LG+P +T + K + + DR K+ W+ + LS AGR
Sbjct: 211 KNQ--ITNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGR 38
Query: 305 EVLMKSMLQSI 315
L+ S+L S+
Sbjct: 37 LQLINSILFSM 5
>TC12829
Length = 448
Score = 55.5 bits (132), Expect = 4e-08
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +3
Query: 297 KCLSKAGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFW 341
K L +AGREVL+KS+ ++IPTY MS F LP S+C +IE M+ F+
Sbjct: 255 KFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFY 389
>BP085058
Length = 452
Score = 55.5 bits (132), Expect = 4e-08
Identities = 32/109 (29%), Positives = 54/109 (49%)
Frame = +2
Query: 263 GKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSKAGREVLMKSMLQSIPTYFMSI 322
GKY+ P G K F F DR+ ++ + L+K R L K +L +I Y M +
Sbjct: 131 GKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNKPARLTLAKPVLSAISMYVMQL 310
Query: 323 FTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLAAHKNDGGMSF 371
LP S+CD+I ++ F W + G+ ++W+ + + K+ G+ F
Sbjct: 311 NWLPQSICDQICTVVRHFVWENV----NGIPLVAWETIQSRKSMVGLIF 445
>AV428268
Length = 429
Score = 52.4 bits (124), Expect = 3e-07
Identities = 44/149 (29%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Frame = +3
Query: 529 YSVRSAYRLCMQKLLDISEFKVLGAWDYI----WNLKVPPKVKNLVWRVARNILPTRMRL 584
YSV+SAY D WD I W++KVP L W+V N + T++ L
Sbjct: 6 YSVKSAY--------DFLHGCANAQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNL 161
Query: 585 REKIVNCPPHCVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFH 644
+ V C LC+ +E + HL F+CP IW+ + V V + H
Sbjct: 162 NRRGVVISNVCPLCSLDEESTDHLLFSCPIV*RIWSKISE*FGVFSVFPNDSHG-----H 326
Query: 645 LLQVLSAGESALFATILWSIWKQRNNKIW 673
LQ L + S F W +W IW
Sbjct: 327 FLQHLGSCGSLNFRKRGWFVWIAAVVCIW 413
>AV780250
Length = 494
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/108 (26%), Positives = 45/108 (40%), Gaps = 2/108 (1%)
Frame = +3
Query: 514 IKEDRFVWNKENNGEYSVRSAYRLCMQKLLDI--SEFKVLGAWDYIWNLKVPPKVKNLVW 571
+K D W +NGEY+ +S Y + K++ S L +W P+ + L+
Sbjct: 165 LKNDVLAWPHTSNGEYTSKSGYAVVRNKVVHALPSSSTALQVSPVVWKAPTLPRCRELIG 344
Query: 572 RVARNILPTRMRLREKIVNCPPHCVLCNSADEDSLHLFFNCPSSSNIW 619
R ILPTR LR + ++ C C + E + P S W
Sbjct: 345 RAFLKILPTRSALRARGMDVDELCPSCETHRESPAQVLLFVPVVSKWW 488
>AV418280
Length = 398
Score = 48.1 bits (113), Expect = 6e-06
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Frame = -2
Query: 595 CVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLL---QVLSA 651
C C + +E S HLFF C S +W + + + + ++ F + +
Sbjct: 388 CPFCTTVEECSGHLFFTCVFSMGVWQALHRWLGISVALPASTLANFAQFSITARNKNQRL 209
Query: 652 GESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAAR 698
GE A++ +WS+W QRN+ I+ + +++L+ S + W A+
Sbjct: 208 GELAIWIATVWSLWIQRNSIIFRNNALDHSYLLDLIQSRSWHWLKAK 68
>BP076564
Length = 371
Score = 47.0 bits (110), Expect = 1e-05
Identities = 33/111 (29%), Positives = 46/111 (40%)
Frame = +2
Query: 560 LKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHCVLCNSADEDSLHLFFNCPSSSNIW 619
LKV K K +V LP R + C C++A +D LH +CP S +W
Sbjct: 56 LKVVEKCKFMVGLGLHQALPINARRHACSMAATGGCGRCSAAVKDILHCLQDCPHSREVW 235
Query: 620 NLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAGESALFATILWSIWKQRNN 670
N S+ + S G + LL ++ ILW IW+ RNN
Sbjct: 236 NRLGCSSFGGFLSSDGWS------WLLSIMKQPNVEKLIYILWWIWR*RNN 370
>AV412895
Length = 405
Score = 45.8 bits (107), Expect = 3e-05
Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Frame = +1
Query: 557 IWNLKVPPKVKNLVWRVARNILPTRMRL--REKIVNC-PPHCVLCNSADEDSLHLFFNCP 613
IW + P +K VWRV + TR L R+ I N C LC A+E HL F+C
Sbjct: 82 IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVIHNALDAICPLCGLAEESGSHLLFSCA 261
Query: 614 SSSNIWNLSNLSNDVKIVVSQGLNSSAVI---FHLLQVLSAGES---ALFATILW 662
S IW + G++++ V HLLQ S G S L T +W
Sbjct: 262 ESMLIW--------YECFAWLGVSTAQVSDPKVHLLQFSSIGRSKAQKLGETTIW 402
>BP049917
Length = 480
Score = 45.1 bits (105), Expect = 5e-05
Identities = 38/136 (27%), Positives = 63/136 (45%)
Frame = -2
Query: 746 GIGICIRDDEGAFVIARTKCLTPKCDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVV 805
G+ + +R+ G V A TK LT EA + + + E E + + VV
Sbjct: 440 GLXVVVRNHFGNVVAAGTKPLTADLGPEYAEACAIKFGVSFAVEHGFNAAIVESNCQVVV 261
Query: 806 DSFGANRHDSTEFGAIINDCKTLFNHFYENSSVEFVRRQANEAAHELAKAATLSASFHIL 865
D+ + G I+ D L HF ++ +V V R+A+ AH+L+K A LS +
Sbjct: 260 DTIARGGTHGSYLGYILADIINLGVHF-QSFTVIHVGRKAHVVAHDLSKFA-LSHANCTW 87
Query: 866 VTPPHCIEHILINDML 881
V HCI+ ++ D++
Sbjct: 86 VGVTHCIQPCVLKDIV 39
>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
MIG10, partial (18%)
Length = 1118
Score = 45.1 bits (105), Expect = 5e-05
Identities = 39/153 (25%), Positives = 60/153 (38%)
Frame = -3
Query: 655 ALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVNGDGEHS 714
A + LW+IWK RN I+ + + + D N ++ N +
Sbjct: 996 ATLSFTLWAIWKNRNRVIFQLEEPNPVNTIFQIRHMQQDANLMSTSQSNKQTTRERNINV 817
Query: 715 QSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTKCLTPKCDVHI 774
S R W P G K N DAS+ +G+ IRD+ G +I+ T +
Sbjct: 816 TSARDRSWRPPPLGVYKLNSDASWKAPSPSCTVGVVIRDNLG-LLISGTASRPLAPSPIV 640
Query: 775 GEALGLLTALQWVHELQLGPIEFELDSKKVVDS 807
EAL L L L L I E D + ++++
Sbjct: 639 SEALALREGLILARSLGLDRILSESDCQPLIEA 541
>AV426428
Length = 413
Score = 44.3 bits (103), Expect = 9e-05
Identities = 28/113 (24%), Positives = 46/113 (39%)
Frame = +3
Query: 557 IWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHCVLCNSADEDSLHLFFNCPSSS 616
+W + P+ WR +LP + L + + P C C +A + + H CP
Sbjct: 54 LWKAEALPRCCETGWRACLGVLPVKASLHARGLAEDPICPRCLAAPKTADHAVLFCP*VH 233
Query: 617 NIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAGESALFATILWSIWKQRN 669
IW S+L ++Q + +QV F TIL++IW +N
Sbjct: 234 PIWFASSLG----FRLNQECKMHEFVADFMQVAD*DTCGEFLTILYAIWTAQN 380
>AV427022
Length = 429
Score = 44.3 bits (103), Expect = 9e-05
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Frame = +1
Query: 595 CVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAG-- 652
C LC A+E HL F+C +S L + VS S + HLLQ S G
Sbjct: 40 CPLCCLAEESGSHLLFSCSNSM----LI*YECHAWLGVSTAQVSDPKV-HLLQFSSIGWS 204
Query: 653 ------ESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAAR 698
ESA++ ++LWSIW RN ++N ++ +LE+ + W +R
Sbjct: 205 KAQKLGESAIWMSVLWSIWCLRNMVVFNGGELDKDQLLEQIQVTAWRWLRSR 360
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,387,080
Number of Sequences: 28460
Number of extensions: 287368
Number of successful extensions: 1401
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of query: 881
length of database: 4,897,600
effective HSP length: 98
effective length of query: 783
effective length of database: 2,108,520
effective search space: 1650971160
effective search space used: 1650971160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC138579.1