BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138465.9 - phase: 0
(521 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV777416 32 0.33
TC8944 similar to UP|Q9SIR2 (Q9SIR2) At2g25310 protein, partial ... 31 0.56
TC8075 similar to UP|E13B_PEA (Q03467) Glucan endo-1,3-beta-gluc... 29 2.1
AV417904 28 4.8
AV427929 27 6.2
TC12107 similar to UP|O80690 (O80690) F8K4.3 protein, partial (10%) 27 8.1
AV766345 27 8.1
CB828971 27 8.1
TC10145 similar to UP|Q8LJS8 (Q8LJS8) Homeodomain protein GhHOX1... 27 8.1
AV780729 27 8.1
AV778497 27 8.1
TC10178 27 8.1
>AV777416
Length = 619
Score = 31.6 bits (70), Expect = 0.33
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Frame = -3
Query: 84 KMTWHSQNYERRNN--SGELRHPSDGLAWKHFDQ----KHPN 119
K TWH NYER N+ +LRHPS FDQ +HP+
Sbjct: 548 KETWHQDNYERCNSDLKQDLRHPS-----SLFDQLCICRHPS 438
>TC8944 similar to UP|Q9SIR2 (Q9SIR2) At2g25310 protein, partial (69%)
Length = 1150
Score = 30.8 bits (68), Expect = 0.56
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 312 KPKVQIVGGDASKPFGYGQKHNWTKRSIFWDLL 344
KP V V GD + G ++HNW KR DL+
Sbjct: 194 KPSVDPVAGD*ANAKGRSEEHNWIKRKRMSDLV 96
>TC8075 similar to UP|E13B_PEA (Q03467) Glucan endo-1,3-beta-glucosidase
precursor ((1->3)-beta-glucan endohydrolase)
((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) ,
partial (88%)
Length = 1437
Score = 28.9 bits (63), Expect = 2.1
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = -1
Query: 445 CADVENGRMHG----MKSHDTHIFMECLISTTFSALEPHVLNPLIEMSQYFKNSCSTTLR 500
C DV+ +MH K H + I I+T FS+ E + N YFK TLR
Sbjct: 1425 CGDVKTSKMHNYTYFFKRHSSGI*Q--YITTPFSSRELRIQNQTNMTVSYFKEKTRKTLR 1252
>AV417904
Length = 413
Score = 27.7 bits (60), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 328 YGQKHNWTKRSIFWDLLYWKD 348
+GQK W R +FW + YWKD
Sbjct: 52 HGQK--WRCRVLFWIIRYWKD 108
>AV427929
Length = 309
Score = 27.3 bits (59), Expect = 6.2
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Frame = +1
Query: 280 RRNKNAFMKGETENRGP---------PPNLTSEQVWNKVKNKP 313
+RN+ ++GET G PPN S + W++ K KP
Sbjct: 181 KRNRKTRVEGETSFGGAQLKSLHSLIPPNKNSNKQWSRAKLKP 309
>TC12107 similar to UP|O80690 (O80690) F8K4.3 protein, partial (10%)
Length = 357
Score = 26.9 bits (58), Expect = 8.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 331 KHNWTKRSIFWDLLYWKDNLLRHNLDVMHIEKNFFDNIFNT 371
K NW + + WD L+ + LR D MHI K D NT
Sbjct: 213 KRNWVGKGVRWD-LFDSEGALRE--DEMHISKTMEDIPRNT 100
>AV766345
Length = 349
Score = 26.9 bits (58), Expect = 8.1
Identities = 9/27 (33%), Positives = 16/27 (58%)
Frame = -3
Query: 140 IQGSGKPYSCWPIIVTPYNLPPDMCMS 166
+ G P+SC+P+ + + PP C+S
Sbjct: 341 LMGGPVPHSCFPLFLLVFLQPPTCCVS 261
>CB828971
Length = 516
Score = 26.9 bits (58), Expect = 8.1
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 69 IPRLQRMYASMQTA-EKMTWHSQNYE 93
I L+ +A QT +K+TWH+QNY+
Sbjct: 278 ISSLEMKHAMPQTKYKKLTWHTQNYK 201
>TC10145 similar to UP|Q8LJS8 (Q8LJS8) Homeodomain protein GhHOX1, partial
(9%)
Length = 536
Score = 26.9 bits (58), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = -3
Query: 387 KDIELYCRRKDLLLVEKSSGKFLKPCANYTLP 418
KD+E YC+++ L V F PC+N+ P
Sbjct: 99 KDLECYCKQRSSLCV-----LFFLPCSNHQWP 19
>AV780729
Length = 475
Score = 26.9 bits (58), Expect = 8.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 60 RKALFYLPIIPRLQRMYASMQTAEKMTWHSQNYERRNNSGELRHPSDGLAWKHFD 114
RK +L ++ R QR+ + A H QN R R P+ G+ +FD
Sbjct: 160 RKVFSHLEVVQRSQRLLRHPRAA----LHEQNPSRMVQLATWRRPTQGVCMVNFD 312
>AV778497
Length = 533
Score = 26.9 bits (58), Expect = 8.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 142 GSGKPYSCWPIIVTPYNLPPDMCMSKPYMF 171
G GKP SC+ I++T ++ + MS PY F
Sbjct: 316 GKGKPISCFLILITCFH--SHISMSFPYHF 399
>TC10178
Length = 746
Score = 26.9 bits (58), Expect = 8.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 321 DASKPFGYGQKHNWTKRSIFWDLLYWKDNLLRHN 354
D+ KP G +NWT + + + LL W+D RH+
Sbjct: 172 DSCKPDG----NNWTLKWV*FVLLLWRDIFRRHS 261
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.139 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,489,646
Number of Sequences: 28460
Number of extensions: 188819
Number of successful extensions: 858
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of query: 521
length of database: 4,897,600
effective HSP length: 94
effective length of query: 427
effective length of database: 2,222,360
effective search space: 948947720
effective search space used: 948947720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC138465.9