BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138465.7 + phase: 0 /pseudo
(2330 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP065719 61 2e-09
TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pro... 37 0.035
AU251550 36 0.060
TC14645 similar to UP|Q41122 (Q41122) Proline-rich protein precu... 36 0.060
AV427333 35 0.10
TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structura... 35 0.13
TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pro... 35 0.17
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),... 34 0.23
TC18683 weakly similar to UP|Q8H599 (Q8H599) OJ1634_B10.18 prote... 34 0.30
TC15425 similar to UP|GRP2_PHAVU (P10496) Glycine-rich cell wall... 33 0.51
TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycop... 33 0.51
TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein p... 32 0.87
TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein... 32 1.1
BG662122 32 1.1
BP043392 32 1.1
TC15072 32 1.1
TC14473 similar to UP|Q8H1Y2 (Q8H1Y2) 20S proteasome alpha 6 sub... 32 1.5
TC9594 weakly similar to GB|AAM19966.1|20466089|AY098956 At2g326... 32 1.5
TC9129 homologue to UP|Q8LLE2 (Q8LLE2) BEL1-related homeotic pro... 32 1.5
TC16697 31 1.9
>BP065719
Length = 567
Score = 60.8 bits (146), Expect = 2e-09
Identities = 35/128 (27%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
Frame = +3
Query: 172 DVPKKFKIPEFDRYNGLTCPQN--HIIKYVRKMGNYSDNDSLMIHCFQDSLMEDAAEWYT 229
++P+ +K+P+F +++G + HI +Y + G+ + N++L + F SL ++A W+T
Sbjct: 159 ELPRGWKVPKFTKFSGDSGESTVEHIARYQIEAGDLAINENLKMKYFPSSLTKNAFTWFT 338
Query: 230 SLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLISLSQKKDESFREYAQIWRGAAARIT 289
+L+ VHT+ +L F + F K + + L S+ +K ES +Y +R +R
Sbjct: 339 TLAPRSVHTWAQLERIFHEQF-FRGECKVSXKDLASVKRKPAESIDDYLNRFRMLKSRCF 515
Query: 290 PALDEEEM 297
+ E E+
Sbjct: 516 THVSEHEL 539
>TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(ATAGP4) (AT5G10430/F12B17_220), partial (42%)
Length = 575
Score = 37.0 bits (84), Expect = 0.035
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Frame = +1
Query: 359 HHKKKETEVGMVSAGAGQSMATVAPINAAQLPPSYPYAPYSQ--HPFFPPFYHQYPLPSG 416
HH +++ + + Q + + P+ QLPP P P P PP + PLP
Sbjct: 190 HHHRQQQHLPHLQQLHHQQLPLLPPL-LHQLPPLLPPPPLQLPLQPLPPPVHPPLPLPLH 366
Query: 417 QPQVPVNAVVQQMQQQPPVQQQQHQQARPTFPPI------PMLYAELL 458
PQ + Q Q PP+ Q Q PP+ P L A LL
Sbjct: 367 PPQ---SHPAQHQAQAPPLDQAQTALIHHHLPPLHSHSTSPSLLAPLL 501
>AU251550
Length = 329
Score = 36.2 bits (82), Expect = 0.060
Identities = 22/62 (35%), Positives = 26/62 (41%)
Frame = +2
Query: 390 PPSYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPVQQQQHQQARPTFPP 449
PP P PY+ P PPF H +P P P P + M QPP +P PP
Sbjct: 140 PPGPPRDPYAPAPPPPPFGHHHPPP---PHGPPSPPPPAMFYQPPPPPGPPGPPQPPHPP 310
Query: 450 IP 451
P
Sbjct: 311 GP 316
>TC14645 similar to UP|Q41122 (Q41122) Proline-rich protein precursor,
partial (52%)
Length = 1060
Score = 36.2 bits (82), Expect = 0.060
Identities = 32/104 (30%), Positives = 44/104 (41%), Gaps = 3/104 (2%)
Frame = +2
Query: 381 VAPINAAQLPPSYP--YAPYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPVQQQ 438
VAP++ P +P +AP+ H +H P P+ P P + +PP
Sbjct: 227 VAPVHPPTHSPIHPPAHAPHHHH------HHHPPAPAPAPIKPPVHPPTSVPVKPPTGHH 388
Query: 439 QHQQARPTFPPIPMLYAEL-LPTLLLRGHCTTRHGKPPPDPLLL 481
H P+ P P LY + LP LLL H T P + LLL
Sbjct: 389 HHHHP-PSPAPAPALYTTITLPPLLLFTHLFT----PSLEALLL 505
>AV427333
Length = 387
Score = 35.4 bits (80), Expect = 0.10
Identities = 29/94 (30%), Positives = 36/94 (37%), Gaps = 4/94 (4%)
Frame = +3
Query: 390 PPSYPYAPYS--QHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPVQQQQHQQARPTF 447
PPS+PY P + HPF PP + S P A + PP + P
Sbjct: 87 PPSHPYNPPTPPSHPFNPPPTPSHYFKSPPPPSHSFAPPPRGHPSPPPSSPPPPSSHPFT 266
Query: 448 PPIPMLYAELLPTLLLRGHCTT--RHGKPPPDPL 479
PP P + P H T H +PPP PL
Sbjct: 267 PPPPHVRPPPSP-----HHPITPPPHVRPPPPPL 353
Score = 31.6 bits (70), Expect = 1.5
Identities = 24/62 (38%), Positives = 26/62 (41%)
Frame = +3
Query: 390 PPSYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPVQQQQHQQARPTFPP 449
PPS P P S HPF PP H P PS P P+ PP RP PP
Sbjct: 225 PPSSPPPP-SSHPFTPPPPHVRPPPS--PHHPIT---------PP------PHVRPPPPP 350
Query: 450 IP 451
+P
Sbjct: 351 LP 356
>TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structural protein
pp78/81, partial (5%)
Length = 710
Score = 35.0 bits (79), Expect = 0.13
Identities = 39/126 (30%), Positives = 48/126 (37%), Gaps = 25/126 (19%)
Frame = +3
Query: 376 QSMATVAPINAAQ-------LPPSYPY----------APYSQHPFFPPFYHQYPLPSGQP 418
QS+ V P NA LPPS+P A + P+FPP P+ Q
Sbjct: 99 QSIPVVPPPNAPPQLPPQQGLPPSFPPPNQFSQTQIPAVPQRDPYFPPPVQSQETPNQQY 278
Query: 419 QVPVNAVVQQMQQQPPVQQQQH-------QQARPTF-PPIPMLYAELLPTLLLRGHCTTR 470
Q P+ PP QQ Q Q A P PPIP + L + L GH
Sbjct: 279 QQPLAPQPHPQPGAPPHQQYQQTPHPQYSQPAPPQHQPPIPSINPPQLQSSL--GH---- 440
Query: 471 HGKPPP 476
H + PP
Sbjct: 441 HVEEPP 458
>TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (33%)
Length = 1002
Score = 34.7 bits (78), Expect = 0.17
Identities = 28/74 (37%), Positives = 31/74 (41%)
Frame = +1
Query: 376 QSMATVAPINAAQLPPSYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPV 435
Q M+ VAP P P Q+P QY P Q Q QQ QQQ P
Sbjct: 769 QDMSRVAPQPCTNXSGXSPPPPVQQYP-------QYQQPQQQQQQ------QQQQQQWP- 906
Query: 436 QQQQHQQARPTFPP 449
QQ QQ +PT PP
Sbjct: 907 -QQLPQQVQPTQPP 945
>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
(79%)
Length = 1017
Score = 34.3 bits (77), Expect = 0.23
Identities = 28/96 (29%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Frame = +3
Query: 390 PPSYPYAPYSQHPFFPPFYHQYPLPS------GQPQVPVNAVVQQMQQQPPVQQQQHQQA 443
PP P+ PY ++P PP H+YP P P P + PPV H
Sbjct: 267 PPPPPHKPY-KYPSPPPPPHKYPHPHPHPVYHSPPPPPPKKHYKYSSPPPPVHTYPHPHP 443
Query: 444 RPTFPPIPM-LYAELLPTLLLRGHCTTRHGKPPPDP 478
PP P+ Y P H PPP P
Sbjct: 444 VYHSPPPPVHTYPHPHPVY---------HSPPPPPP 524
Score = 30.4 bits (67), Expect = 3.3
Identities = 23/101 (22%), Positives = 37/101 (35%), Gaps = 7/101 (6%)
Frame = +3
Query: 383 PINAAQLPPSYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPVQQQQHQQ 442
P+++ P P+ Y P PP+ +P+ P P + + PP + H
Sbjct: 168 PVHSPPPPYEKPHPVYHSPP--PPYEKPHPVYHSPPPPPPHKPYKYPSPPPPPHKYPHPH 341
Query: 443 ARPTF--PPIP-----MLYAELLPTLLLRGHCTTRHGKPPP 476
P + PP P Y+ P + H + PPP
Sbjct: 342 PHPVYHSPPPPPPKKHYKYSSPPPPVHTYPHPHPVYHSPPP 464
>TC18683 weakly similar to UP|Q8H599 (Q8H599) OJ1634_B10.18 protein, partial
(37%)
Length = 715
Score = 33.9 bits (76), Expect = 0.30
Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 16/99 (16%)
Frame = -3
Query: 371 SAGAGQSMATVAPINAAQLPPSYPYAPYSQHPFFPPF----------------YHQYPLP 414
+A + T+ P A LPP P P P PPF + PLP
Sbjct: 590 TAAPALGLPTLPPFPKATLPP-LPSQPSFPKPTLPPFPAMPKFTLPPLPTMPKFTLPPLP 414
Query: 415 SGQPQVPVNAVVQQMQQQPPVQQQQHQQARPTFPPIPML 453
S QPQ+P N + P + + PT P +P L
Sbjct: 413 SSQPQLP-NTLPPLPTFPLPTAPKLTLPSLPTLPTVPFL 300
>TC15425 similar to UP|GRP2_PHAVU (P10496) Glycine-rich cell wall structural
protein 1.8 precursor (GRP 1.8), partial (6%)
Length = 667
Score = 33.1 bits (74), Expect = 0.51
Identities = 25/72 (34%), Positives = 32/72 (43%), Gaps = 11/72 (15%)
Frame = +2
Query: 388 QLPPSYPYAPYSQHPFFPPF--YHQYPLPSG-QP----QVPVNAVV----QQMQQQPPVQ 436
Q PS P PY Q PP Y +P P G QP Q+P + Q+ QQPP
Sbjct: 44 QTNPSRPQTPYYQSAEQPPVPAYGHHPPPYGHQPPPPYQIPPTSAAPYPPPQVHQQPPA- 220
Query: 437 QQQHQQARPTFP 448
H+ +P +P
Sbjct: 221 --SHEYGQPAYP 250
>TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (8%)
Length = 584
Score = 33.1 bits (74), Expect = 0.51
Identities = 25/86 (29%), Positives = 30/86 (34%)
Frame = +1
Query: 382 APINAAQLPPSYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPVQQQQHQ 441
AP + P YP PY QH F+PP P P P P PP +
Sbjct: 172 APPYGMEFSP-YPSLPYPQHQFYPPPMAPPPPP---PPAPAPPAPPPYWAAPPPRPYGPP 339
Query: 442 QARPTFPPIPMLYAELLPTLLLRGHC 467
T PP P A + + HC
Sbjct: 340 LFTSTLPPRPPKPAPPKNVVKEKSHC 417
>TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (87%)
Length = 1232
Score = 32.3 bits (72), Expect = 0.87
Identities = 17/67 (25%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Frame = +3
Query: 385 NAAQLPPSYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQ-MQQQPPVQQQQHQQA 443
N + S+ P+S H PP PLP+ + Q+ ++ + + Q++PP +++ +
Sbjct: 30 NGSSFFTSHILLPHSHH-HHPPHTFTCPLPNPRQQLQIHRLARHPAQRRPPSPRRRRLRP 206
Query: 444 RPTFPPI 450
+P PP+
Sbjct: 207 QPLHPPL 227
>TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein {Danio
rerio;} , partial (5%)
Length = 678
Score = 32.0 bits (71), Expect = 1.1
Identities = 28/97 (28%), Positives = 38/97 (38%), Gaps = 5/97 (5%)
Frame = +1
Query: 389 LPPSYPY--APYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQ---MQQQPPVQQQQHQQA 443
+PPS P + + P PP H L + P + Q QPP ++ A
Sbjct: 355 IPPSPPLLMSATDRAPLPPPSTHLTSLTTPSPPSSRTTITQTPLPSPPQPPSPPPKYGVA 534
Query: 444 RPTFPPIPMLYAELLPTLLLRGHCTTRHGKPPPDPLL 480
PP+PM + P LL T+ PPP P L
Sbjct: 535 TIPPPPLPMSSIDRTPLPLLSTPLTSLDA-PPPTPTL 642
>BG662122
Length = 386
Score = 32.0 bits (71), Expect = 1.1
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 489 CDFHQGALGHDVEGCYTLKYIVKKLIDQGKL 519
C++ + + HD++ C+TLK ++KLI G+L
Sbjct: 212 CEYRRSVV-HDIDDCFTLKREIEKLIKMGRL 301
>BP043392
Length = 442
Score = 32.0 bits (71), Expect = 1.1
Identities = 21/62 (33%), Positives = 24/62 (37%)
Frame = -2
Query: 390 PPSYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPVQQQQHQQARPTFPP 449
PPSY Y PY + PP P+ S Q N PP Q R T PP
Sbjct: 414 PPSYGYPPY--YNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQPRATNPP 241
Query: 450 IP 451
+P
Sbjct: 240 LP 235
>TC15072
Length = 721
Score = 32.0 bits (71), Expect = 1.1
Identities = 21/62 (33%), Positives = 24/62 (37%)
Frame = +1
Query: 390 PPSYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPVQQQQHQQARPTFPP 449
PPSY Y PY + PP P+ S Q N PP Q R T PP
Sbjct: 31 PPSYGYPPY--YNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQPRATNPP 204
Query: 450 IP 451
+P
Sbjct: 205 LP 210
>TC14473 similar to UP|Q8H1Y2 (Q8H1Y2) 20S proteasome alpha 6 subunit, partial
(86%)
Length = 1302
Score = 31.6 bits (70), Expect = 1.5
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -1
Query: 381 VAPINAAQLPPSYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVN--AVVQQMQQQPPVQQQ 438
++ N + P P H F + +P P + Q+P A VQQ++ PP Q Q
Sbjct: 1017 ISVFNTSST*P*IIKCP*ENHLGFQHYLDLHPYPDLR-QLPAQLLAQVQQVELHPPSQSQ 841
Query: 439 QHQQARPTFP 448
+HQ + FP
Sbjct: 840 KHQSSVEQFP 811
>TC9594 weakly similar to GB|AAM19966.1|20466089|AY098956
At2g32600/T26B15.16 {Arabidopsis thaliana;}, partial
(9%)
Length = 502
Score = 31.6 bits (70), Expect = 1.5
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Frame = +3
Query: 390 PPSYPYAPYSQHPFFPPFYHQYPLPSGQP----QVPVNAVV----QQMQQQPPVQQQQHQ 441
PP+ P Y Q P P P G P +P AV+ Q+ + PP Q Q Q
Sbjct: 69 PPTMPPPQYQQFRPPPSGMQMPPPPQGVPGPPRHLPPPAVMGGQPPQVWRPPPPPQYQQQ 248
Query: 442 QARP-TFPPIPMLYAELLPTLLLRGHCTTRHGKPPP 476
RP +P M LP HG PPP
Sbjct: 249 VGRPMAYPQSSMPPPPPLP---------HNHGMPPP 329
>TC9129 homologue to UP|Q8LLE2 (Q8LLE2) BEL1-related homeotic protein 13
(Fragment), partial (22%)
Length = 604
Score = 31.6 bits (70), Expect = 1.5
Identities = 21/52 (40%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Frame = +2
Query: 696 QKKADTPTTPPIDKATLTDVSPVTKDVSRPSQSIEDSNL---DEILRIIKRS 744
Q++A TPTTPP AT T P T ++P+ D N D L I RS
Sbjct: 410 QQQAQTPTTPP-SSATSTAPPPPTTTTTKPTGKRSDINATESDPSLHAINRS 562
>TC16697
Length = 635
Score = 31.2 bits (69), Expect = 1.9
Identities = 26/102 (25%), Positives = 32/102 (30%)
Frame = -1
Query: 377 SMATVAPINAAQLPPSYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPVQ 436
S + P P S+ P HP PP P PS + P A Q PP
Sbjct: 635 SSRNITPSGMGASPASHFXXPPPNHPP-PPSSPSPPAPSQRKPAPATAPPSNSSQSPPPN 459
Query: 437 QQQHQQARPTFPPIPMLYAELLPTLLLRGHCTTRHGKPPPDP 478
P P P + L P ++ G P P P
Sbjct: 458 PSSTDPTSPAPQPHP---SHLSPA------SSSSQGSPVPSP 360
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.338 0.146 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,254,777
Number of Sequences: 28460
Number of extensions: 663084
Number of successful extensions: 5589
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 5249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5525
length of query: 2330
length of database: 4,897,600
effective HSP length: 105
effective length of query: 2225
effective length of database: 1,909,300
effective search space: 4248192500
effective search space used: 4248192500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC138465.7