TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138464.7 - phase: 0 
         (302 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14167 similar to UP|O48642 (O48642) Class III acidic endochiti...   254  1e-68
TC19619 similar to UP|CHIA_CICAR (P36908) Acidic endochitinase p...   137  3e-33
TC15376 weakly similar to UP|Q7SYH2 (Q7SYH2) Cystatin domain fet...    77  5e-15
TC18525 weakly similar to UP|O48642 (O48642) Class III acidic en...    39  0.001
TC19760 weakly similar to UP|CPR2_PETCR (Q99090) Light-inducible...    31  0.29
BU494441                                                               30  0.50
TC15505 gb|M82900.1|TOBCP16SRD Nicotiana plumbaginifolia 16S rRN...    30  0.65
TC16892 homologue to UP|Q84VE7 (Q84VE7) Arm repeat protein, part...    29  1.1
TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic me...    27  3.3
BP037240                                                               27  5.5
BI418738                                                               26  7.2
TC12297 similar to GB|AAM19913.1|20453349|AY097397 AT3g57090/F24...    26  7.2
TC11853                                                                26  7.2
TC12481                                                                26  9.5
CB827913                                                               26  9.5
TC8373 homologue to UP|RUBA_PEA (P08926) RuBisCO subunit binding...    26  9.5
AV779640                                                               26  9.5
TC10337 similar to GB|AAL06978.1|15810105|AY056090 AT4g37830/T28...    26  9.5
TC8402 homologue to GB|CAA42103.1|1345501|AMGADPH glycolytic gly...    26  9.5

>TC14167 similar to UP|O48642 (O48642) Class III acidic endochitinase
           precursor  , partial (88%)
          Length = 1336

 Score =  254 bits (650), Expect = 1e-68
 Identities = 139/305 (45%), Positives = 197/305 (64%), Gaps = 6/305 (1%)
 Frame = +1

Query: 1   MSNKYSYPSLLLLSISLTLFFQSTNA--GDLVIYWGQDNGDGSLRDTCNTGLFNIVNIAF 58
           M+ K    S ++LS+ L L F S NA  G + +YWGQ+ G+G+L   C+TG + IV +AF
Sbjct: 43  MAPKRQAFSFIILSL-LALSFTSINAAKGGIAVYWGQNGGEGTLSTACDTGNYEIVLLAF 219

Query: 59  LSTFGSGRQPQLNLAGHCNPPN-CKNLRDSINICQSRGIKVMLSIGGEDRNTYSFSSPED 117
           L+ FG GR P  N AGHC   + C  L+  I  CQ +G+KV LSIGG     YS  S +D
Sbjct: 220 LNQFGCGRTPSWNFAGHCGDWSPCTKLQPDIENCQRKGVKVFLSIGGAI-GPYSLCSEQD 396

Query: 118 ANQLADYIWNNFLGGNSPSRPFGDAILDGVDFDIEGGSKLHYETLALKLNDHYKSSRKKF 177
           A+++A+Y++ NFL G     P G   LDG+DFDIEGG+ L+++ LA  L D  +   K F
Sbjct: 397 AHEVANYLYKNFLSGQYG--PLGSVTLDGIDFDIEGGTNLYWDALARHL-DALRHKNKYF 567

Query: 178 YLTAAPLCIFQDNILQTAINTGLFDYVWVQFYNSPGACNFVSN--NPTSFKNSWSQWINS 235
            L+AAP C   D  L TAI TGLFDY+++QFYN+P  C + ++  + T    SW+ W + 
Sbjct: 568 SLSAAPQCFMPDYYLDTAIKTGLFDYLFIQFYNNP-PCQYDTSRGDATLLLQSWAHWTSY 744

Query: 236 MSTKK-VFVGLPASSSNAAPSGGFVEAQDLINQLLPIVKPSPKYGGVMLWNRRFDVTSGY 294
           +     V++GLPAS++ AAPSGG++  QDLI+++LP +KP+P YGG+MLW+R  DV + Y
Sbjct: 745 VHPNNTVYMGLPASTA-AAPSGGYIPPQDLISKVLPYIKPTPNYGGIMLWDRFNDVQNNY 921

Query: 295 SSKIK 299
           S++ K
Sbjct: 922 SNQFK 936


>TC19619 similar to UP|CHIA_CICAR (P36908) Acidic endochitinase precursor  ,
           partial (41%)
          Length = 541

 Score =  137 bits (344), Expect = 3e-33
 Identities = 71/124 (57%), Positives = 85/124 (68%)
 Frame = +1

Query: 179 LTAAPLCIFQDNILQTAINTGLFDYVWVQFYNSPGACNFVSNNPTSFKNSWSQWINSMST 238
           L AAP C + D  L +AI TGLFD+VWVQFYN+P  C +   N  +  NSW QW +    
Sbjct: 28  LAAAPQCPYPDAHLDSAIKTGLFDHVWVQFYNNP-QCQYSRGNTNNLLNSWKQWTDVSEI 204

Query: 239 KKVFVGLPASSSNAAPSGGFVEAQDLINQLLPIVKPSPKYGGVMLWNRRFDVTSGYSSKI 298
           K+VF+GLPAS   AAPSGGFV A  L +Q+LP VK SPKYGGVMLW+R  D  +GYS+ I
Sbjct: 205 KQVFLGLPASEG-AAPSGGFVPADVLNSQVLPSVKSSPKYGGVMLWDRFNDGPNGYSTAI 381

Query: 299 KASV 302
           K SV
Sbjct: 382 KGSV 393


>TC15376 weakly similar to UP|Q7SYH2 (Q7SYH2) Cystatin domain fetuin-like
           protein, partial (6%)
          Length = 582

 Score = 76.6 bits (187), Expect = 5e-15
 Identities = 59/183 (32%), Positives = 82/183 (44%), Gaps = 35/183 (19%)
 Frame = +3

Query: 1   MSNKYSYPSLLLLS-ISLTLFFQSTNAGDLV-IYWGQ-DNGDGSLRDTCNTGLFNIVNIA 57
           +SN +   +L+ LS I+          G LV +YWGQ  N +G+L + C TG + IV I 
Sbjct: 27  LSNLFLLLALVTLSSITYPSIAADDGGGGLVSVYWGQASNEEGTLLEACETGNYGIVIIE 206

Query: 58  FLSTFGSGRQPQLNLAGHCNPPN---CKNLRDSINICQSRGIKVMLSIGGEDRNTYSFSS 114
            L  + SG  P LNL  HC       C  L+  I  CQ + +KV+LSI  +D  T +   
Sbjct: 207 GLIVYNSGNTPTLNLRNHCGSDQQHLCSALQKDIEYCQQKNVKVILSILADDSVTPAPPP 386

Query: 115 P--------------------------EDAN---QLADYIWNNFLGGNSPSRPFGDAILD 145
           P                          +D N   +LADY+ N+F  G     P G+  LD
Sbjct: 387 PPPPLSPPSPTPSPSPSPSPSSSSTLKDDVNVEKELADYLLNHFFSGK--PGPLGNVSLD 560

Query: 146 GVD 148
           G+D
Sbjct: 561 GID 569


>TC18525 weakly similar to UP|O48642 (O48642) Class III acidic endochitinase
           precursor  , partial (9%)
          Length = 324

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = -2

Query: 278 YGGVMLWNRRFDVTSGYSSKIKASV 302
           YGGVM+W+R +D  SGYS++IK SV
Sbjct: 314 YGGVMIWDRYYDKISGYSAEIKDSV 240


>TC19760 weakly similar to UP|CPR2_PETCR (Q99090) Light-inducible protein
           CPRF-2, partial (21%)
          Length = 573

 Score = 30.8 bits (68), Expect = 0.29
 Identities = 20/76 (26%), Positives = 32/76 (41%), Gaps = 1/76 (1%)
 Frame = +2

Query: 208 FYNSPGACNFVSNNPTSFKNSWSQWINSMSTKKVFVGLPASSSNAAPSGGFVEAQDLINQ 267
           F++ P     V    ++   S S+W      ++     P S+S+AA    FVE Q     
Sbjct: 77  FWSPPIPATGVDGGSSNMSRSHSEWAFQRFLQEASAASPPSASSAADDVAFVEIQGQHKS 256

Query: 268 LLPI-VKPSPKYGGVM 282
              +   P+P  GGV+
Sbjct: 257 STGVAAAPTPVNGGVL 304


>BU494441 
          Length = 440

 Score = 30.0 bits (66), Expect = 0.50
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 206 VQFYNSPGACNFVSNNPTSFKNSWSQW 232
           VQ   SP A  +V +NP+S  N W  W
Sbjct: 319 VQLKASPNAFQYVPSNPSSTSNHWMTW 239


>TC15505 gb|M82900.1|TOBCP16SRD Nicotiana plumbaginifolia 16S rRNA gene,
           partial (43%)
          Length = 668

 Score = 29.6 bits (65), Expect = 0.65
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -2

Query: 229 WSQWINSMSTKKVFVGLPASSSN---AAPSGGFVEAQDLINQLLP 270
           WS W NSM +++ + GL    S+     PSG   +      QL+P
Sbjct: 208 WSMWFNSMQSEEPYQGLTCRESS*KRGVPSGTRTQVVHGCRQLVP 74


>TC16892 homologue to UP|Q84VE7 (Q84VE7) Arm repeat protein, partial (3%)
          Length = 510

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 246 PASSSNAAPSGGFVEAQDLINQLLPIVKPSP 276
           P+SSS+++ S  F + Q L N  L + KPSP
Sbjct: 20  PSSSSSSSSSNKFPDNQTLHNDKLCLAKPSP 112


>TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic membrane
           protein 1, complete
          Length = 1149

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -2

Query: 236 MSTKKVFVGLPASSSNAAPSGGFVEAQDLINQLLPIVKPSPKYGG 280
           +S++K+F+GL A+ ++              + + P+V+P+P + G
Sbjct: 824 VSSRKLFMGLAANENHLIDKSSNTTTNKWSDPVDPVVRPAPAHDG 690


>BP037240 
          Length = 484

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 15/36 (41%), Positives = 21/36 (57%), Gaps = 4/36 (11%)
 Frame = -2

Query: 3   NKYSY----PSLLLLSISLTLFFQSTNAGDLVIYWG 34
           N YSY    PS+LLL+  L L  + +  G +V +WG
Sbjct: 468 N*YSYVFFFPSILLLTWPLLLSDECSEEGRIVRFWG 361


>BI418738 
          Length = 545

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 71  NLAGHCNPPNCKNLRDSINICQSRGI 96
           NL   CN  NC  LR  ++IC  R I
Sbjct: 512 NLNDICNSANCFTLRGLMHICHYRDI 435


>TC12297 similar to GB|AAM19913.1|20453349|AY097397 AT3g57090/F24I3_170
           {Arabidopsis thaliana;}, partial (79%)
          Length = 569

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 228 SWSQWINSMSTKKVFVGLPASSS 250
           SW++W+NS   K  ++G   +SS
Sbjct: 98  SWTRWVNSSPAKTNYLGATLTSS 166


>TC11853 
          Length = 547

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 107 RNTYSFSSPEDANQLADYIWNNFLGG 132
           R   + S    + Q+ +YIWN+FL G
Sbjct: 386 RKDTNISDKIHSKQIVNYIWNHFLSG 309


>TC12481 
          Length = 693

 Score = 25.8 bits (55), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = +2

Query: 8  PSLLLLSISLTLFFQSTNAGDLVIYWGQD 36
          P L   SISL+   QS ++    ++WGQ+
Sbjct: 5  PLLFCFSISLSCLSQSFSSLSFTLFWGQN 91


>CB827913 
          Length = 567

 Score = 25.8 bits (55), Expect = 9.5
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 109 TYSFSSPEDANQLADYIWNNFLGGNSPSRPFGDAILDGV--DFDIEGGS 155
           ++SF+S   A+ +   +W +F    SPS P   +  D         GGS
Sbjct: 179 SFSFTSAASASTVT--VWESFTPATSPSTPLASSFSDATAPSLSASGGS 39


>TC8373 homologue to UP|RUBA_PEA (P08926) RuBisCO subunit binding-protein
           alpha subunit, chloroplast precursor (60 kDa chaperonin
           alpha subunit) (CPN-60 alpha), partial (97%)
          Length = 2053

 Score = 25.8 bits (55), Expect = 9.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 246 PASSSNAAPSGGFVEAQDLINQLLPIVKPSPKYGGVMLW 284
           P +S+ AAPS        LIN L+P    S + GG++ W
Sbjct: 232 PLTSTLAAPS-----RLALINSLMPSASLSAQGGGMLCW 333


>AV779640 
          Length = 428

 Score = 25.8 bits (55), Expect = 9.5
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 84  LRDSINICQSRGIKVMLSIGGEDRNTYSFSSPEDANQLADYIWNNFLGGN 133
           L+ S N+     +  MLS+G        F  P+D    ADY   NF  GN
Sbjct: 249 LQKSTNVQMIISVAAMLSVGNS-----IFYRPKDKQVHADYARMNFHTGN 115


>TC10337 similar to GB|AAL06978.1|15810105|AY056090 AT4g37830/T28I19_110
           {Arabidopsis thaliana;}, partial (73%)
          Length = 617

 Score = 25.8 bits (55), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 126 WNNFLGGNSPSRPFGDAILDGVDFDIEGGS 155
           W + L  NSPS P G+++L    +   GGS
Sbjct: 355 WCSCLVSNSPSGPHGNSLLRICKYGYAGGS 266


>TC8402 homologue to GB|CAA42103.1|1345501|AMGADPH glycolytic
           glyceraldehyde 3-phosphate dehydrogenase {Antirrhinum
           majus;} , partial (43%)
          Length = 700

 Score = 25.8 bits (55), Expect = 9.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 62  FGSGRQPQLNLAGHCNPPNCKNLRDSINICQSR 94
           +G   QP     G+CNP  C   +  +  C S+
Sbjct: 423 YGQSNQPH----GYCNPIRCHTTKQVLQSCHSK 337


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,152,541
Number of Sequences: 28460
Number of extensions: 91529
Number of successful extensions: 480
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of query: 302
length of database: 4,897,600
effective HSP length: 90
effective length of query: 212
effective length of database: 2,336,200
effective search space: 495274400
effective search space used: 495274400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)