TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138464.11 - phase: 0 
         (292 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9480 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding...    28  2.4
AV778804                                                               27  3.1
TC18789 similar to UP|Q94KE2 (Q94KE2) AT3g22390/MCB17_12, partia...    27  3.1
TC14760 weakly similar to UP|Q8GUU3 (Q8GUU3) FEG protein, partia...    27  4.0
TC9650 similar to UP|O49485 (O49485) Phosphoglycerate dehydrogen...    27  4.0
TC16823 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like prote...    27  4.0
CB828549                                                               27  5.3
BP056955                                                               27  5.3
AV775378                                                               26  6.9

>TC9480 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding protein
           cnd41-like protein, partial (33%)
          Length = 716

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 186 EKVKNIETDTCPCFITDGNGKVLR 209
           E+V NIETDTCP  +   N +  R
Sbjct: 492 ERVSNIETDTCPLLLHVPNDRQRR 421


>AV778804 
          Length = 573

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 58  KRTKRKYVRIRRNNGYIKKNSCKKSSPEEEIVVQHSNS 95
           KR KRK++R++    + + +  KK SP+  + + H  S
Sbjct: 170 KRRKRKHLRLKMRCQFHQNSRWKKCSPQRLLQLSHFQS 283


>TC18789 similar to UP|Q94KE2 (Q94KE2) AT3g22390/MCB17_12, partial (5%)
          Length = 523

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 15/40 (37%), Positives = 20/40 (49%)
 Frame = +3

Query: 34  PIAPKPVTGEQTPANQSTTASLPGKRTKRKYVRIRRNNGY 73
           P AP       TPA   +  S+PG  T  +Y+ I +NN Y
Sbjct: 150 PNAPSGSGASTTPAMSFSYPSMPGNET--QYLAILQNNAY 263


>TC14760 weakly similar to UP|Q8GUU3 (Q8GUU3) FEG protein, partial (8%)
          Length = 1001

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 198 CFITDGNGKVLRVNDAYKKMVVNEESEEVEVVIWLKVKQSVAWCYSYPAFTCG 250
           C+  DGNG        ++ M   E S +V+V+    V +   WC  YP   CG
Sbjct: 640 CWAIDGNG--------FR*M---ETSYKVQVLWAQNVAEMRFWCLFYPLLCCG 765


>TC9650 similar to UP|O49485 (O49485) Phosphoglycerate dehydrogenase-like
           protein , partial (47%)
          Length = 1041

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 19/69 (27%), Positives = 30/69 (42%), Gaps = 2/69 (2%)
 Frame = -1

Query: 59  RTKRKYVR--IRRNNGYIKKNSCKKSSPEEEIVVQHSNSNDEMKRNLAVVTLQLMPEKAA 116
           R+KR   R  IRR  G IK +              H+NS   ++R + ++   +  +   
Sbjct: 807 RSKRHMQRNEIRRGKGLIKAHKL------------HTNSTSTIRRGIRIMCNDIHTKPLG 664

Query: 117 ATSNVDLNL 125
            TSN+  NL
Sbjct: 663 TTSNLSANL 637


>TC16823 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like protein, partial
           (29%)
          Length = 711

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 33  RPIAPKPVTGEQTPANQSTTASLPGKRT 60
           RP+ P P+T    P N  +TA+ P   T
Sbjct: 184 RPLLPHPLTMSSPPGNPPSTAASPSSPT 267


>CB828549 
          Length = 501

 Score = 26.6 bits (57), Expect = 5.3
 Identities = 13/45 (28%), Positives = 24/45 (52%)
 Frame = +1

Query: 212 DAYKKMVVNEESEEVEVVIWLKVKQSVAWCYSYPAFTCGVRLQYT 256
           D  K++V+ +  + V ++I    K++V W Y    F C V + +T
Sbjct: 280 DLVKELVLQKVLQRV*LIIPSLSKRTVLWRYFLVLFICSVDMLFT 414


>BP056955 
          Length = 581

 Score = 26.6 bits (57), Expect = 5.3
 Identities = 14/26 (53%), Positives = 18/26 (68%), Gaps = 1/26 (3%)
 Frame = +3

Query: 122 DLNLNLNLTVE-NIQILDNLNRSQNN 146
           DLNLNLNL +  N+ +  NLN + NN
Sbjct: 177 DLNLNLNLNLNLNLNLNLNLNLNLNN 254


>AV775378 
          Length = 355

 Score = 26.2 bits (56), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (54%), Gaps = 4/29 (13%)
 Frame = -3

Query: 231 WLKVKQSVAWCYSYP----AFTCGVRLQY 255
           W    +S AWCY++P     F  G++ +Y
Sbjct: 332 WSHQVESEAWCYTFPVS*NGFETGIQTRY 246


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,585,241
Number of Sequences: 28460
Number of extensions: 77956
Number of successful extensions: 452
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of query: 292
length of database: 4,897,600
effective HSP length: 90
effective length of query: 202
effective length of database: 2,336,200
effective search space: 471912400
effective search space used: 471912400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)