TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138453.6 - phase: 0 /pseudo
         (667 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV781081                                                               31  0.56
BP035812                                                               30  1.3
AV427921                                                               29  2.8

>AV781081 
          Length = 528

 Score = 31.2 bits (69), Expect = 0.56
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 106 EEYGIEHQQNGVNERKKKEALWRWKDAC 133
           EEYG    +N  + R+K+   WRW+ +C
Sbjct: 274 EEYGFS*SKNQTSRRRKRS*CWRWECSC 357


>BP035812 
          Length = 572

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 529 EISYANRSMQRKYSKSCTWK 548
           EISYA  S   KYS SC WK
Sbjct: 129 EISYARGSGHNKYSSSCYWK 188


>AV427921 
          Length = 284

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 17/59 (28%), Positives = 27/59 (44%)
 Frame = +1

Query: 113 QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQKCNILLNMLPSRVMHKKTPFETW 171
           QQNGV+ERK +  L   +    M  + +    + +     +LN  P+ V+    P E W
Sbjct: 28  QQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEEAW 204


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.367    0.164    0.589 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,703,218
Number of Sequences: 28460
Number of extensions: 139682
Number of successful extensions: 1981
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 1137
length of query: 667
length of database: 4,897,600
effective HSP length: 96
effective length of query: 571
effective length of database: 2,165,440
effective search space: 1236466240
effective search space used: 1236466240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 58 (26.9 bits)