BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138452.7 + phase: 0 /pseudo
(677 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP083809 96 2e-20
BP035867 81 5e-16
BP066705 53 1e-07
AV774371 43 2e-04
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 33 0.12
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 33 0.15
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 33 0.20
TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, pa... 32 0.44
TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 gluc... 31 0.57
TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Ara... 30 0.98
AV773558 29 2.2
BE122609 29 2.2
TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%) 29 2.2
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 29 2.2
TC11441 similar to PIR|S54157|S54157 extensin-like protein - cow... 29 2.8
BI419972 28 3.7
AV422180 28 3.7
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 28 3.7
AV428128 28 6.3
TC9679 weakly similar to UP|Q8H1B5 (Q8H1B5) Hin1-like protein, p... 28 6.3
>BP083809
Length = 369
Score = 95.5 bits (236), Expect = 2e-20
Identities = 49/90 (54%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = +2
Query: 461 PLVKVLCMVDWEEKAAMGYIYEEMDRAKEKIRTNFSGQARSYNPIWKIIDDRWDRQLHRP 520
PLV VL + D E+K AMGYIYE MD+AKE IR + Y IW IID+RW+ QLHRP
Sbjct: 98 PLVCVLRLADSEKKPAMGYIYEAMDKAKEAIRASLHDDKSKYQKIWDIIDNRWNSQLHRP 277
Query: 521 LHAAGLFLNPMLRYAPN-FTVDDEIVNGMY 549
LHAAG FLNP Y + D E+ G+Y
Sbjct: 278 LHAAGHFLNPEYYYNDSELDYDFEVQKGVY 367
>BP035867
Length = 482
Score = 81.3 bits (199), Expect = 5e-16
Identities = 39/93 (41%), Positives = 60/93 (63%)
Frame = -2
Query: 366 KTITTYIYGRTSLISLLHKFTNDVDSIRPAMTHFATSYLTLGCLNEHQNQLIDLFKSNEW 425
+ IT YI RT+LI+LL T+ D IRP +T FATSYL LG +++ +F S E
Sbjct: 481 RKITPYICSRTTLITLLQFHTHGRDLIRPGLTRFATSYLNLG*FHDNWGAFERMFASEE* 302
Query: 426 KTSKLAKSKDGKIVQNVVLSKVFWKDVLNCLRG 458
+ AK++DGK + ++++ K+FWKD+ C++G
Sbjct: 301 QKRTYAKTRDGKKICDMIMDKLFWKDITTCVKG 203
>BP066705
Length = 511
Score = 53.1 bits (126), Expect = 1e-07
Identities = 24/74 (32%), Positives = 41/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 39 DPAWEYAISTEPGSRRVQCKFCQLAFTGSAYRVKHHLAGTSRDVAVCPSVPLDVKKLMQD 98
DP W++ I+ + ++V+C +C +G YR+K HLA S +V C P +V M++
Sbjct: 225 DPGWDHGIAQDERKKKVRCNYCGKIVSGGRYRLKQHLARVSGEVTYCEKAPEEVYLRMKE 404
Query: 99 KV-----NKLQKKL 107
+ NK QK++
Sbjct: 405 NLEGCRPNKKQKQV 446
>AV774371
Length = 492
Score = 42.7 bits (99), Expect = 2e-04
Identities = 22/69 (31%), Positives = 34/69 (48%)
Frame = +3
Query: 53 RRVQCKFCQLAFTGSAYRVKHHLAGTSRDVAVCPSVPLDVKKLMQDKVNKLQKKLLEKAN 112
++V+C +C F G R K HL D C SVP DV + + V+ + +K +
Sbjct: 231 KKVRCNYCHSEFWGGINRFKLHLGCYGEDAGRCVSVPDDVMQWFKQIVSNAEDAKNKKRH 410
Query: 113 LIVVDADGD 121
LI + A+ D
Sbjct: 411 LIDISAEND 437
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 33.5 bits (75), Expect = 0.12
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
D++ D+DDD+ EE ED+ DDD +E
Sbjct: 300 DDDDDDDDDDGEEEEDDDDDDEEEE 374
Score = 32.0 bits (71), Expect = 0.34
Identities = 13/21 (61%), Positives = 16/21 (75%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDD 659
D E + DDDE E++EDE DDD
Sbjct: 246 DNEEEEDDDEEEDDEDEDDDD 308
Score = 31.2 bits (69), Expect = 0.57
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
DE+ D+DDD+ ++ E+E DDD E
Sbjct: 291 DEDDDDDDDDDDDGEEEEDDDDDDE 365
Score = 29.6 bits (65), Expect = 1.7
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDD 659
+EE D+D++E +E+ED+ DDD
Sbjct: 252 EEEEDDDEEEDDEDEDDDDDD 314
Score = 29.3 bits (64), Expect = 2.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
D++ D+DDD+ E E++ DDD +E
Sbjct: 297 DDDDDDDDDDDGEEEEDDDDDDEEE 371
Score = 28.9 bits (63), Expect = 2.8
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
D+E ++D+DE ++++D+ DDD +E
Sbjct: 267 DDEEEDDEDEDDDDDDDDDDDGEEE 341
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 33.1 bits (74), Expect = 0.15
Identities = 13/38 (34%), Positives = 24/38 (62%)
Frame = +1
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQEFPPAMGINDVLNL 676
+EE + +++EVE +E DD+P Q+ MG +++L
Sbjct: 277 EEEEEEEEEEVEAEAEEEDDEPIQKLLEPMGKEQIISL 390
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 32.7 bits (73), Expect = 0.20
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
DE+ D DDD+ EE ED+ DDD E
Sbjct: 794 DEDEDEDDDDDEEEEDDDDDDEDDE 868
Score = 30.4 bits (67), Expect = 0.98
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDD 659
DE+GD D+DE +++++E +DD
Sbjct: 782 DEDGDEDEDEDDDDDEEEEDD 844
Score = 28.9 bits (63), Expect = 2.8
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
DE+ D+DDDE EE +D+ DD+ +E
Sbjct: 800 DEDEDDDDDE-EEEDDDDDDEDDEE 871
Score = 28.1 bits (61), Expect = 4.8
Identities = 11/24 (45%), Positives = 18/24 (74%)
Frame = +2
Query: 640 EEGDNDDDEVEENEDEYDDDPYQE 663
E+ + DD++ +E+EDE DDD +E
Sbjct: 764 EDIEEDDEDGDEDEDEDDDDDEEE 835
>TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, partial (3%)
Length = 504
Score = 31.6 bits (70), Expect = 0.44
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQEFPPAMG 669
D++ D DD E E+ ED+ DDD + P +G
Sbjct: 57 DDDSDPDDAESEDEEDDDDDDDGDDEDPLLG 149
>TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 glucosidase
SCW10 precursor (Soluble cell wall protein 10) ,
partial (6%)
Length = 1209
Score = 31.2 bits (69), Expect = 0.57
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 626 NGIGVLLKGLPSIDEEGDNDDDEVEENEDEYDDD 659
+G L P D++ D+DDD+ ++++D+ DDD
Sbjct: 50 SGFKRLFSPKPDDDDDDDDDDDDDDDDDDDDDDD 151
Score = 29.3 bits (64), Expect = 2.2
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQEFP 665
D++ D+DDD+ ++++D+ DDD ++ P
Sbjct: 92 DDDDDDDDDDDDDDDDDDDDDGDKKQP 172
>TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (75%)
Length = 1083
Score = 30.4 bits (67), Expect = 0.98
Identities = 11/24 (45%), Positives = 18/24 (74%)
Frame = +3
Query: 636 PSIDEEGDNDDDEVEENEDEYDDD 659
P +++ D+D DE +++EDE DDD
Sbjct: 213 PIVEDVKDDDKDEADDDEDEDDDD 284
>AV773558
Length = 469
Score = 29.3 bits (64), Expect = 2.2
Identities = 10/23 (43%), Positives = 18/23 (77%)
Frame = -2
Query: 641 EGDNDDDEVEENEDEYDDDPYQE 663
E D+DDD+ ++++D+Y DD +E
Sbjct: 366 EDDDDDDDDDDDDDDYTDDEDEE 298
>BE122609
Length = 356
Score = 29.3 bits (64), Expect = 2.2
Identities = 20/47 (42%), Positives = 24/47 (50%)
Frame = +2
Query: 595 LNGGNLMDLDIRNCSGLL*EYLV*HVAHQGVNGIGVLLKGLPSIDEE 641
L+GG D C+ LL + * VAHQ V GIG LL L D +
Sbjct: 215 LSGGGAFDSIHLICNHLLLKCFA*LVAHQVVRGIGELLSILKRKDPQ 355
>TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%)
Length = 517
Score = 29.3 bits (64), Expect = 2.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 637 SIDEEGDNDDDEVEENEDEYDDD 659
S D++ D+DD E E+++D DDD
Sbjct: 124 SSDDDDDDDDSEDEDDDDNEDDD 192
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 29.3 bits (64), Expect = 2.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
D+E D+DDDE ++ ED+ +D +E
Sbjct: 404 DQEDDDDDDEDDDEEDDGGEDEEEE 330
Score = 28.1 bits (61), Expect = 4.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -2
Query: 627 GIGVLLKGLPSIDEEGDNDDDEVEENEDEYDDDPYQEFPPAMGINDVLNLD 677
G G G DE+G++ +D+ +++ED+ ++D E G+ + N D
Sbjct: 455 GAGPEENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNED 303
>TC11441 similar to PIR|S54157|S54157 extensin-like protein - cowpea
(fragment) {Vigna unguiculata;} , partial (6%)
Length = 541
Score = 28.9 bits (63), Expect = 2.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 2 ASTSNVNETSSVASSAPVASSSAAARVRPKNAKGNKTDPA 41
+++SN N+T++ + +P +SSS+ P +G PA
Sbjct: 29 SNSSNTNQTTTASPPSPQSSSSSPPSPAPSKQEGQSPPPA 148
>BI419972
Length = 498
Score = 28.5 bits (62), Expect = 3.7
Identities = 8/21 (38%), Positives = 18/21 (85%)
Frame = +1
Query: 639 DEEGDNDDDEVEENEDEYDDD 659
DE+GD++DD+ ++++D+ +D
Sbjct: 361 DEDGDDEDDDADDDDDDEGED 423
>AV422180
Length = 424
Score = 28.5 bits (62), Expect = 3.7
Identities = 15/41 (36%), Positives = 24/41 (57%)
Frame = +2
Query: 67 SAYRVKHHLAGTSRDVAVCPSVPLDVKKLMQDKVNKLQKKL 107
S +R+K HLA + DV+ S+ D++K++ QKKL
Sbjct: 251 SHWRIKTHLAISHMDVSKINSIIADMRKVLAKNPQVEQKKL 373
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 28.5 bits (62), Expect = 3.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 634 GLPSIDEEGDNDDDEVEENEDE 655
G P D++ D+DDDE EE E++
Sbjct: 167 GDPDDDDDDDDDDDEEEEEEED 232
Score = 27.3 bits (59), Expect = 8.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYD 657
D++ D+DDD+ EE E+E D
Sbjct: 176 DDDDDDDDDDDEEEEEEED 232
>AV428128
Length = 415
Score = 27.7 bits (60), Expect = 6.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 4 TSNVNETSSVASSAPVASSSAAARVRPKNAKGNKTDPA 41
+S TSS +S P +S AAAR P + + + +P+
Sbjct: 124 SSATRSTSSATTSPPSKTSPAAARGAPSSTRSHAPEPS 237
>TC9679 weakly similar to UP|Q8H1B5 (Q8H1B5) Hin1-like protein, partial
(54%)
Length = 710
Score = 27.7 bits (60), Expect = 6.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 639 DEEGDNDDDEVEENEDEYDDD 659
DE+GD DDD E EDE++D+
Sbjct: 238 DEDGDADDD--EGGEDEFEDE 182
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,204,631
Number of Sequences: 28460
Number of extensions: 150798
Number of successful extensions: 1181
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of query: 677
length of database: 4,897,600
effective HSP length: 96
effective length of query: 581
effective length of database: 2,165,440
effective search space: 1258120640
effective search space used: 1258120640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC138452.7