TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138451.9 - phase: 0 
         (68 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19270 weakly similar to UP|Q9M0G0 (Q9M0G0) Gamma-glutamyltrans...    80  1e-16
TC18564 homologue to UP|Q8H1T0 (Q8H1T0) Gag polyprotein, partial...    25  3.7
AV417282                                                               24  4.9
TC8783 similar to UP|Q8L759 (Q8L759) Expressed protein (At5g5765...    24  4.9
TC13987 similar to UP|Q45307 (Q45307) 5A2 divIB (Fragment), part...    24  6.3
AV420326                                                               24  6.3

>TC19270 weakly similar to UP|Q9M0G0 (Q9M0G0) Gamma-glutamyltransferase-like
           protein, partial (19%)
          Length = 681

 Score = 79.7 bits (195), Expect = 1e-16
 Identities = 41/62 (66%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
 Frame = +3

Query: 1   MAAIHEGGHAVDAVVAAALCLGVVSSASSGIGGGAFMLLRLAN-CVAKAFDMRETAPLLA 59
           ++ + +GGHAVDA VA ALCLGVV SASSGIGGG FM++R ++   A+AFDMRETAPL A
Sbjct: 381 VSMLRQGGHAVDAAVATALCLGVVFSASSGIGGGGFMVVRSSSTSQAQAFDMRETAPLAA 560

Query: 60  SK 61
           S+
Sbjct: 561 SQ 566


>TC18564 homologue to UP|Q8H1T0 (Q8H1T0) Gag polyprotein, partial (7%)
          Length = 521

 Score = 24.6 bits (52), Expect = 3.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 43  NCVAKAFDMRETAPLLASKVPVNHRL 68
           NC    + MR+ A  L  KV V+HR+
Sbjct: 116 NCQWSNYRMRDGASFLIPKVQVSHRI 39


>AV417282 
          Length = 407

 Score = 24.3 bits (51), Expect = 4.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 1   MAAIHEGGHAVDAV 14
           M A HEGGHA+ A+
Sbjct: 312 MTAFHEGGHALVAI 353


>TC8783 similar to UP|Q8L759 (Q8L759) Expressed protein (At5g57655), partial
            (49%)
          Length = 1243

 Score = 24.3 bits (51), Expect = 4.9
 Identities = 14/46 (30%), Positives = 23/46 (49%)
 Frame = -1

Query: 4    IHEGGHAVDAVVAAALCLGVVSSASSGIGGGAFMLLRLANCVAKAF 49
            +++GG  VDA V   +  G++S+ S   G  A   L+   C +  F
Sbjct: 1009 MNKGGSRVDAKVEVNVHSGLLSALSYDQGRYASRFLQKLTCTSPGF 872


>TC13987 similar to UP|Q45307 (Q45307) 5A2 divIB (Fragment), partial (8%)
          Length = 491

 Score = 23.9 bits (50), Expect = 6.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 3   AIHEGGHAVDAVVAAALCLGVVS 25
           A H  GH V  +VA  +C+G ++
Sbjct: 136 AAHMRGHQVTPIVAPRMCVGYMA 68


>AV420326 
          Length = 416

 Score = 23.9 bits (50), Expect = 6.3
 Identities = 17/28 (60%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 11  VDAVVAAALCLGVVS--SASSGIGGGAF 36
           VDAVV   L L   S  SASSG G GAF
Sbjct: 262 VDAVVFPLLLLFANSEQSASSGGGSGAF 179


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,061,180
Number of Sequences: 28460
Number of extensions: 10546
Number of successful extensions: 62
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of query: 68
length of database: 4,897,600
effective HSP length: 44
effective length of query: 24
effective length of database: 3,645,360
effective search space: 87488640
effective search space used: 87488640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)