BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138199.6 + phase: 0
(339 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15030 similar to UP|Q9LVH6 (Q9LVH6) Aldose 1-epimerase-like pr... 615 e-177
TC8418 weakly similar to UP|Q8LFH1 (Q8LFH1) Aldose 1-epimerase-l... 326 4e-90
TC19795 similar to UP|Q9LVH6 (Q9LVH6) Aldose 1-epimerase-like pr... 99 5e-40
AV766034 116 6e-27
BP048557 55 2e-08
AV416002 29 1.3
BP028625 29 1.3
TC19880 similar to PIR|T51624|T51624 threonine-tRNA ligase [imp... 28 2.2
TC14118 homologue to UP|AAS18240 (AAS18240) Enolase , complete 26 8.4
>TC15030 similar to UP|Q9LVH6 (Q9LVH6) Aldose 1-epimerase-like protein,
partial (94%)
Length = 1212
Score = 615 bits (1585), Expect = e-177
Identities = 286/336 (85%), Positives = 319/336 (94%)
Frame = +3
Query: 4 QNKKPEIFELNNGTMQLLVTNLGCTITSFSVPAKDGVLSDVVLGLDSVESYQKGLAPYFG 63
QN+K +FELNNG MQ+L+TNLGCTITS SVPAKDGVLSDVVLGLDSVESYQKGL+PYFG
Sbjct: 15 QNQKA*LFELNNGAMQVLITNLGCTITSLSVPAKDGVLSDVVLGLDSVESYQKGLSPYFG 194
Query: 64 CIVGRVANRIKNGKFTLDGVEYSLPLNKAPNTLHGGNVGFDKKVWDVLEYKKGETPSITF 123
CIVGRVANRIK+GKFTLDGVEYSLP+N PN+LHGGNVGFDKK+W+V+EY+KGETPSITF
Sbjct: 195 CIVGRVANRIKDGKFTLDGVEYSLPINNPPNSLHGGNVGFDKKIWEVIEYRKGETPSITF 374
Query: 124 KYDSHDGEEGYPGDITVTATYTLTSSTTMRLDMEGVAKNKPTIINLAQHTYWNLAGHSSG 183
KY SHDGEEGYPG+ITVTATYTLTS+TT+RLDMEGV K+KPTIINLAQHTYWNLAGHSSG
Sbjct: 375 KYQSHDGEEGYPGEITVTATYTLTSNTTLRLDMEGVPKDKPTIINLAQHTYWNLAGHSSG 554
Query: 184 NILDHSIKISANHVTPVDQNTVPTGEIVPVKGTPFDFTSEKRIGDTINQVGLGYDHNYVL 243
NILDHSI+I ANH+TPVDQNTVPTGEI+PVKGTPFDFTS+KRIGDTI+QVG+GYDHNYVL
Sbjct: 555 NILDHSIQIWANHITPVDQNTVPTGEIMPVKGTPFDFTSQKRIGDTISQVGMGYDHNYVL 734
Query: 244 DCGEEKAGLRHAAKVRDPSSSRVLNLWTNAPGVQFYTGNYVDNVTGKGGAVYGKHAGLCL 303
D GEEK GLRHAAKV++PSSSRVLNLWTN PG+QFYT NYVD V GK GAVYGKHAGLCL
Sbjct: 735 DSGEEKEGLRHAAKVKEPSSSRVLNLWTNVPGMQFYTANYVDGVAGKAGAVYGKHAGLCL 914
Query: 304 ETQGFPDAVNKPNFPSVVVKPGEKYQHSMLFEFSIE 339
ETQGFP+A+N+P+FPS+VV+PGEKYQHSM +EFS+E
Sbjct: 915 ETQGFPNAINQPDFPSIVVRPGEKYQHSMSYEFSVE 1022
>TC8418 weakly similar to UP|Q8LFH1 (Q8LFH1) Aldose 1-epimerase-like
protein, partial (87%)
Length = 1344
Score = 326 bits (835), Expect = 4e-90
Identities = 162/333 (48%), Positives = 214/333 (63%)
Frame = +2
Query: 5 NKKPEIFELNNGTMQLLVTNLGCTITSFSVPAKDGVLSDVVLGLDSVESYQKGLAPYFGC 64
+ K +EL G +L +TN G T+ S VP K G L+D+ LG D+V+ Y K YFG
Sbjct: 116 DNKIGFYELKKGNFRLNLTNYGATVVSVIVPDKHGNLADIALGYDTVDEY-KNDGVYFGA 292
Query: 65 IVGRVANRIKNGKFTLDGVEYSLPLNKAPNTLHGGNVGFDKKVWDVLEYKKGETPSITFK 124
+VGRVANRI N +FTLDG Y LP N NTLHGG GF VW V +K E ITF
Sbjct: 293 LVGRVANRIGNAQFTLDGKTYKLPANDKDNTLHGGPTGFGDVVWTVKTHK--EDSHITFT 466
Query: 125 YDSHDGEEGYPGDITVTATYTLTSSTTMRLDMEGVAKNKPTIINLAQHTYWNLAGHSSGN 184
Y S D E+G+PG + V+ TY + + + + M +KPT +NLAQHTYWNL GH SG+
Sbjct: 467 YHSFDNEQGFPGQLEVSVTYMIIGTNKLGVRMIATPVDKPTPVNLAQHTYWNLRGHDSGD 646
Query: 185 ILDHSIKISANHVTPVDQNTVPTGEIVPVKGTPFDFTSEKRIGDTINQVGLGYDHNYVLD 244
IL H+++I + +TPVD +PTGE VKGTP+DF K +G I+ + YD NYVLD
Sbjct: 647 ILSHTVQIFGSKITPVDDELIPTGEFQEVKGTPYDFLEPKEVGSQIHDLPGLYDVNYVLD 826
Query: 245 CGEEKAGLRHAAKVRDPSSSRVLNLWTNAPGVQFYTGNYVDNVTGKGGAVYGKHAGLCLE 304
+ LR A V+D S R L LW+N PGVQ+YT + + GKGGA Y +++G+ LE
Sbjct: 827 PSSPQ-HLRKVAIVKDNVSGRKLELWSNQPGVQYYTSGMLKDTKGKGGATYHQYSGIALE 1003
Query: 305 TQGFPDAVNKPNFPSVVVKPGEKYQHSMLFEFS 337
TQGFPD+VN PNFPS++V+PG+ Y+H M++ F+
Sbjct: 1004TQGFPDSVNHPNFPSMIVRPGQTYKHYMVYRFT 1102
>TC19795 similar to UP|Q9LVH6 (Q9LVH6) Aldose 1-epimerase-like protein,
partial (20%)
Length = 545
Score = 98.6 bits (244), Expect(2) = 5e-40
Identities = 47/78 (60%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +3
Query: 261 PSSSRVLNLWTNAPGVQFYTGNYVDNVTGKGGAVYGKHA-GLCLETQGFPDAVNKPNFPS 319
PSSSRVLNLWTN PG+ FYT NYVD V GK GAVY K + P PNFPS
Sbjct: 150 PSSSRVLNLWTNVPGMPFYTANYVDGVAGKEGAVYAKACWAYVWRPRDSPMP*TTPNFPS 329
Query: 320 VVVKPGEKYQHSMLFEFS 337
+V++PGEKYQH++L+EFS
Sbjct: 330 IVIRPGEKYQHTLLYEFS 383
Score = 82.4 bits (202), Expect(2) = 5e-40
Identities = 35/40 (87%), Positives = 39/40 (97%)
Frame = +1
Query: 212 PVKGTPFDFTSEKRIGDTINQVGLGYDHNYVLDCGEEKAG 251
PVKGTPFDFTS+KRIGDTI+Q+G+GYDHNYVLDCGEEK G
Sbjct: 1 PVKGTPFDFTSQKRIGDTISQLGMGYDHNYVLDCGEEKEG 120
Score = 35.0 bits (79), Expect = 0.018
Identities = 26/76 (34%), Positives = 29/76 (37%), Gaps = 1/76 (1%)
Frame = +2
Query: 243 LDCGEEKAGLRHAAKVRDPSSSRVLNLWTNAPGVQFYTGNYVD-NVTGKGGAVYGKHAGL 301
L G+ K RH AKVRD L P + V GL
Sbjct: 95 LIAGKRKKVSRHVAKVRDALELEGAELVDQCPWYAILHSQLC*WRCWKRRCCVCESMLGL 274
Query: 302 CLETQGFPDAVNKPNF 317
CLETQGFP A+N F
Sbjct: 275 CLETQGFPHAINHAQF 322
>AV766034
Length = 475
Score = 116 bits (290), Expect = 6e-27
Identities = 61/102 (59%), Positives = 72/102 (69%)
Frame = -2
Query: 236 GYDHNYVLDCGEEKAGLRHAAKVRDPSSSRVLNLWTNAPGVQFYTGNYVDNVTGKGGAVY 295
GY NYVLD GE+ ++ AAKV D S R L L+ APG QF TGN+V +V GKGG VY
Sbjct: 438 GYGLNYVLD-GEKGKKIKLAAKVFDKKSGRELVLYPKAPGGQF*TGNFVQDVKGKGGFVY 262
Query: 296 GKHAGLCLETQGFPDAVNKPNFPSVVVKPGEKYQHSMLFEFS 337
HAGL LETQ FPD+VN PNFPS +V P + Y+H MLF+FS
Sbjct: 261 QAHAGLGLETQAFPDSVNPPNFPSTIVTPEKPYKHLMLFKFS 136
>BP048557
Length = 257
Score = 54.7 bits (130), Expect = 2e-08
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -3
Query: 299 AGLCLETQGFPDAVNKPNFPSVVVKPGEKYQHSMLFEFS 337
AGLCLE+Q PD+VN PNFPS +V P + Y+H ML +FS
Sbjct: 252 AGLCLESQVXPDSVNHPNFPSSIVTPEKPYKHVMLLKFS 136
>AV416002
Length = 426
Score = 28.9 bits (63), Expect = 1.3
Identities = 26/102 (25%), Positives = 49/102 (47%), Gaps = 6/102 (5%)
Frame = +2
Query: 111 LEYKKGETPSITFKYDSHDGEEGYPGDITVTATYTLTSSTTMRLDMEGVAKNKPT----- 165
+ + + + P F+ + H +G P I V ++YT+ + R+ ++ VA KP+
Sbjct: 35 INHSQKDLPVSIFESELHV-IDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSA 211
Query: 166 IINLAQHTYWNLAG-HSSGNILDHSIKISANHVTPVDQNTVP 206
LA H L G HS+ +L IK+ +++ + + VP
Sbjct: 212 ATQLAAH----LTGIHSAIKMLHSRIKVLHHYLLAMQKGDVP 325
>BP028625
Length = 566
Score = 28.9 bits (63), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (51%)
Frame = +3
Query: 189 SIKISANHVTPVDQNTVPTGEIVPVKGTPFDFTSEKRIGDTINQ 232
++K S NH+T +PT + P+ T T ++ + TINQ
Sbjct: 213 TVKHSGNHITQKHH*PIPTNQNRPIPNTNRILTLQQLLHPTINQ 344
>TC19880 similar to PIR|T51624|T51624 threonine-tRNA ligase [imported] -
Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (13%)
Length = 536
Score = 28.1 bits (61), Expect = 2.2
Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +2
Query: 221 TSEKRIGDTINQVGLGYDHNYVLDCGEEKAGL-RHAAKVRDPSSSRVLNL 269
T++++I + + + L ++NY+L GEE+A + + VRD + RV+++
Sbjct: 128 TTDRKIQEKVQEGQLA-EYNYILVVGEEEANAGQVSVHVRDKAEHRVMSI 274
>TC14118 homologue to UP|AAS18240 (AAS18240) Enolase , complete
Length = 1696
Score = 26.2 bits (56), Expect = 8.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 113 YKKGETPSITFKYDSHDGEEGYPGD 137
YK+ +T + FK D++DG + GD
Sbjct: 848 YKEDKTYDLNFKEDNNDGSQKISGD 922
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,473,321
Number of Sequences: 28460
Number of extensions: 71902
Number of successful extensions: 238
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of query: 339
length of database: 4,897,600
effective HSP length: 91
effective length of query: 248
effective length of database: 2,307,740
effective search space: 572319520
effective search space used: 572319520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC138199.6