TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138199.3 - phase: 0 
         (306 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11187 weakly similar to UP|O80918 (O80918) At2g38330 protein, ...    29  0.87
TC9165 similar to UP|DME_ARATH (Q8LK56) Transcriptional activato...    28  2.5
TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (...    28  2.5
TC8956 similar to UP|Q9ZS28 (Q9ZS28) MADs-box protein, GDEF1, pa...    27  3.3
TC9925                                                                 27  3.3
TC13710                                                                26  7.4
BP064704                                                               26  7.4
TC15800 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/d...    26  9.6
TC8130 similar to UP|Q9XFM6 (Q9XFM6) Progesterone-binding protei...    26  9.6
AU089151                                                               26  9.6
BP053010                                                               26  9.6
TC18600 similar to UP|Q94JU2 (Q94JU2) AT3g28050/MMG15_6, partial...    26  9.6
TC12858 weakly similar to UP|Q9ZS76 (Q9ZS76) Hexose transporter,...    26  9.6
BP063262                                                               26  9.6

>TC11187 weakly similar to UP|O80918 (O80918) At2g38330 protein, partial
           (29%)
          Length = 1104

 Score = 29.3 bits (64), Expect = 0.87
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +1

Query: 35  SPDQCSGINRFVALFAVPLLSFHFIASNNPYKMNLRFLAADTLQKLIILCLLAIWSNFSK 94
           +P  C GI    A+F +PLL ++F       ++ +   A  T+    I  LL IW N + 
Sbjct: 241 TPVLCLGIGNLSAVFLLPLLMYYF-------QLGVTGAAISTVLSQYIGALLMIW-NLNN 396

Query: 95  RGCL 98
           R  L
Sbjct: 397 RAVL 408


>TC9165 similar to UP|DME_ARATH (Q8LK56) Transcriptional activator DEMETER
           (DNA glycosylase-related protein DME), partial (3%)
          Length = 562

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +1

Query: 200 GKLHITVRK----SNASRSDIYSRRSQGLSSNTPRPSNL 234
           G+LH  V K     + ++++  S  +QGL SN  +P+NL
Sbjct: 124 GRLHFPVSKMPKNKDKTKNESASANAQGLESNPEQPANL 240


>TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (Fibrillarin
           2) (AtFib2), partial (85%)
          Length = 1116

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 48  LFAVPLLSFHFIASNNPYKMNLRFLAADTLQKLIILCLLAIWSNFSKRGCL 98
           LF++ LL    +++NN   + L+    D L +L ++CL  +  +F  + CL
Sbjct: 963 LFSIFLLL*QSVSTNNTGMVTLKGFKGDLLSRLKLICLQLV--HFINKDCL 817


>TC8956 similar to UP|Q9ZS28 (Q9ZS28) MADs-box protein, GDEF1, partial
           (58%)
          Length = 1100

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 195 EIKEDGKLHITVRKSNASRSDIYSRRSQGLSSNTPRPSNLTNAEIYSLQSSRN 247
           EI   GK+ I + ++  +R   YS+R  G+       S L +A++  +  S+N
Sbjct: 131 EIMGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKN 289


>TC9925 
          Length = 546

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = +3

Query: 84  CLLAIWSNFSKRGCLEWTITLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCII 143
           C    W   S    +E ++ L         +V G P  K   G   GS M  +++  C+ 
Sbjct: 135 CSCQSWKPSSWLS*VEASVVLQR*PFKVRVIVEGNPCRKS--GVSFGSKMYIVIIFCCVC 308

Query: 144 WYTLMLFMFEF 154
           WY +    F+F
Sbjct: 309 WYFISFHSFDF 341


>TC13710 
          Length = 451

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 11/16 (68%), Positives = 13/16 (80%), Gaps = 1/16 (6%)
 Frame = +3

Query: 291 THSNNMLTH-HPHPLF 305
           THSN++ TH  PHPLF
Sbjct: 42  THSNSVFTHPPPHPLF 89


>BP064704 
          Length = 471

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 13/21 (61%), Positives = 14/21 (65%)
 Frame = -2

Query: 284 TLKHTLSTHSNNMLTHHPHPL 304
           T K TLS H N+ L HH HPL
Sbjct: 287 TPKETLSHHQNS-LNHH*HPL 228


>TC15800 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/dl4935c
           {Arabidopsis thaliana;}, partial (39%)
          Length = 818

 Score = 25.8 bits (55), Expect = 9.6
 Identities = 10/21 (47%), Positives = 16/21 (75%)
 Frame = +1

Query: 166 PDTAGSIVSIHVDSDVMSLDG 186
           P +AGS+VS+H   +++SL G
Sbjct: 703 PASAGSVVSLHGRFEILSLSG 765


>TC8130 similar to UP|Q9XFM6 (Q9XFM6) Progesterone-binding protein-like,
           partial (70%)
          Length = 977

 Score = 25.8 bits (55), Expect = 9.6
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -1

Query: 166 PDTAGSIVSIH--VDSDVMSLDGRTPLETDAEIKEDGKLHITVRKSNASRSDIYSRRSQG 223
           P +AG   S    VDSD   +D          + + G   +TV        ++YS+  + 
Sbjct: 665 PFSAGLAASTSRGVDSDGSPVDS---------VSDTGTFDLTVPTFTYFSENLYSQSCKA 513

Query: 224 LSSNTPRP 231
            SSN PRP
Sbjct: 512 SSSNGPRP 489


>AU089151 
          Length = 424

 Score = 25.8 bits (55), Expect = 9.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 90  SNFSKRGCLEWTITLFSLSTLPNTLVMGIPLLKG 123
           S+F+KRGCL     LF L T+ +   + + ++ G
Sbjct: 296 SSFTKRGCLRNPTMLFCLPTMLSFSTLLLTIMTG 397


>BP053010 
          Length = 379

 Score = 25.8 bits (55), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 166 PDTAGSIVSIHVDSDVMSLDG 186
           P    S+V +HVDSD+M   G
Sbjct: 300 PRVPNSLVELHVDSDIMGPQG 362


>TC18600 similar to UP|Q94JU2 (Q94JU2) AT3g28050/MMG15_6, partial (19%)
          Length = 438

 Score = 25.8 bits (55), Expect = 9.6
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
 Frame = +1

Query: 103 TLFSLSTL----------PNTLVMGIPLLKGMYGEFSGSLMVQIV-VLQCIIWYTLML 149
           T+F LST           P +  +G  LL     +FS    + +  VLQC +W TL L
Sbjct: 169 TMFLLSTQTFWLYVSFYHPPSSTIGRELLPQFQAQFSAECFLSLASVLQCRLWCTLEL 342


>TC12858 weakly similar to UP|Q9ZS76 (Q9ZS76) Hexose transporter, partial
           (51%)
          Length = 882

 Score = 25.8 bits (55), Expect = 9.6
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = -2

Query: 24  AYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYKMNLRFLAADTLQKLIIL 83
           AYG  K W +FS  Q  G+ R   +F        F +SNN + + L   +     KL+  
Sbjct: 581 AYGENKLWPVFSLQQ--GLPRVFHIFQ------SFTSSNNVF*LCLNISSPAYFHKLLSS 426

Query: 84  CLLAIWSNFSKR 95
             +   SN   R
Sbjct: 425 SFVTTASNKGAR 390


>BP063262 
          Length = 491

 Score = 25.8 bits (55), Expect = 9.6
 Identities = 8/12 (66%), Positives = 9/12 (74%)
 Frame = +1

Query: 29  KWWKIFSPDQCS 40
           KWW + SP QCS
Sbjct: 91  KWWLVCSPSQCS 126


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,202,660
Number of Sequences: 28460
Number of extensions: 68028
Number of successful extensions: 647
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of query: 306
length of database: 4,897,600
effective HSP length: 90
effective length of query: 216
effective length of database: 2,336,200
effective search space: 504619200
effective search space used: 504619200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)