TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138199.2 + phase: 0 
         (617 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14632 homologue to UP|Q947H2 (Q947H2) Ribosomal protein, parti...    27  9.7
TC14022 similar to UP|Q9FZ09 (Q9FZ09) Patatin-like protein 1, pa...    27  9.7
TC14633 homologue to UP|R172_ARATH (P51413) 60S ribosomal protei...    27  9.7
TC13677 similar to UP|Q8H0P8 (Q8H0P8) RNA-binding protein, parti...    27  9.7

>TC14632 homologue to UP|Q947H2 (Q947H2) Ribosomal protein, partial (95%)
          Length = 772

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 513 NVHGKYPASGPKLRLDLLKELRAVSQKKGV 542
           N  G++PA   K  LDLLK   + ++ KG+
Sbjct: 295 NGQGRWPAKSAKFILDLLKNAESNAEVKGL 384


>TC14022 similar to UP|Q9FZ09 (Q9FZ09) Patatin-like protein 1, partial (29%)
          Length = 536

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 18/48 (37%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
 Frame = -1

Query: 66  SSVVSISIQLLRKGGPDAVCKHLCSLKKGSVCI-VNAASERDMTVFAL 112
           S  VSIS +L  K G    C HL  L+ GS+C+ +  A E+ +  + L
Sbjct: 203 SDQVSISGRLNLKRGW*ICCLHLYILESGSLCVFLFNAKEKQLKAYEL 60


>TC14633 homologue to UP|R172_ARATH (P51413) 60S ribosomal protein L17-2,
           partial (96%)
          Length = 846

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 513 NVHGKYPASGPKLRLDLLKELRAVSQKKGV 542
           N  G++PA   K  LDLLK   + ++ KG+
Sbjct: 261 NGQGRWPAKSAKFILDLLKNAESNAEVKGL 350


>TC13677 similar to UP|Q8H0P8 (Q8H0P8) RNA-binding protein, partial (41%)
          Length = 577

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 14/39 (35%), Positives = 19/39 (47%)
 Frame = +2

Query: 286 CAKVVGQALAGIPLWQLGPESRHPGVPYIVFPGNVGDSG 324
           CA     AL G  + +L PES H  + +  FPG    +G
Sbjct: 206 CAATALSALQGYKVDELSPESSHLRLQFSRFPGPRSGAG 322


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,148,285
Number of Sequences: 28460
Number of extensions: 112564
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of query: 617
length of database: 4,897,600
effective HSP length: 96
effective length of query: 521
effective length of database: 2,165,440
effective search space: 1128194240
effective search space used: 1128194240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)