BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138133.8 + phase: 0 /pseudo
(751 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidat... 143 9e-35
AV778571 134 7e-32
AV406755 129 1e-30
AV779547 123 1e-28
CB828263 114 7e-26
TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-contain... 109 1e-24
BP045440 108 4e-24
BP065014 96 2e-20
BP065724 69 2e-12
TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like... 69 4e-12
TC12663 weakly similar to UP|Q84ZV8 (Q84ZV8) R 3 protein, partia... 52 1e-10
AI967395 64 1e-10
TC15876 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-... 55 5e-08
CB829528 53 2e-07
TC12592 52 3e-07
AV406565 51 6e-07
AV408271 48 7e-06
AW428699 47 1e-05
TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-... 47 1e-05
BP068235 42 3e-05
>TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidate
resistance protein KR1, partial (6%)
Length = 586
Score = 143 bits (361), Expect = 9e-35
Identities = 78/148 (52%), Positives = 104/148 (69%), Gaps = 1/148 (0%)
Frame = +1
Query: 16 YQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDDNGLQRGNEITPSL-LKAIEESRIFI 74
Y VF+S SDTR+GF+G+LY AL+DKGI TFIDD GL R ++I ++ KAIE SRI I
Sbjct: 103 YDVFISLITSDTRFGFSGDLYTALSDKGILTFIDD-GLPRPDDIMSTVNSKAIESSRIAI 279
Query: 75 PVFSINYASSSFCLDELDHIIHCYKTKGRPVLPVFFGVDPSHVRHHKGSYGEALAEHEKR 134
V S NYASSSFCLDEL +I+ + KG + PVF+ V+PS VR+ KG +G+A A HE+R
Sbjct: 280 VVISENYASSSFCLDELMYILKRREEKGLLIWPVFYQVEPSDVRYQKGGFGKAFASHEER 459
Query: 135 FQNDPKNMERLQGWKDALSQAANLSGYH 162
F +D + + W++AL Q A+L +H
Sbjct: 460 FGSDSAKVRK---WRNALKQVADLKAFH 534
>AV778571
Length = 452
Score = 134 bits (336), Expect = 7e-32
Identities = 69/127 (54%), Positives = 87/127 (68%)
Frame = +3
Query: 613 ILDHCEYLTHIPDVSGLSNLEKLSFEYCKNLITIHNSIGHLNKLERLSAFGCRTLKRFPP 672
+ CE +T IPD+SGL NLEKLSF Y +NLI IH S+G LNKL L GC ++ FPP
Sbjct: 33 VSSECESITQIPDLSGLPNLEKLSFVYSENLIKIHESVGFLNKLRILDIEGCCKIRTFPP 212
Query: 673 LGLASLKELKLSCCYSLKSFPKLLCKMTNIDKIWFWYTSIRELPSSFQNLSELDELSVRE 732
+ LASL+EL LS C SL+SFP++L KM NI I ++T I+ELPSS NL+ L L +
Sbjct: 213 MKLASLEELYLSHCSSLESFPEILAKMENITLIGVYHTPIKELPSSIGNLTRLRRLELHG 392
Query: 733 FGMLRFP 739
GML+ P
Sbjct: 393 CGMLQLP 413
>AV406755
Length = 425
Score = 129 bits (325), Expect = 1e-30
Identities = 64/114 (56%), Positives = 83/114 (72%)
Frame = +3
Query: 14 YKYQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDDNGLQRGNEITPSLLKAIEESRIF 73
+ Y VFLSFRG ++R FT +LY AL + GI F+D N LQRG +I+ SLLKAIE+SRI
Sbjct: 78 WSYDVFLSFRGEESRRSFTSHLYTALKNAGIKVFMD-NELQRGEDISSSLLKAIEDSRIA 254
Query: 74 IPVFSINYASSSFCLDELDHIIHCYKTKGRPVLPVFFGVDPSHVRHHKGSYGEA 127
I +FS NY S +CLDEL+ II C +T G+ V+PVF+ VDPS +R +G+ GEA
Sbjct: 255 IIIFSTNYTGSKWCLDELEKIIECQRTIGQEVMPVFYNVDPSDIRKQRGTVGEA 416
>AV779547
Length = 556
Score = 123 bits (308), Expect = 1e-28
Identities = 69/142 (48%), Positives = 91/142 (63%)
Frame = +1
Query: 20 LSFRGSDTRYGFTGNLYKALTDKGINTFIDDNGLQRGNEITPSLLKAIEESRIFIPVFSI 79
+SFRG DTR FT +L AL KG TF DD L++G I+ L++AIE S+I I VFS
Sbjct: 109 VSFRGEDTRNNFTDHLLGALYGKGFVTFKDDTMLRKGKNISTELIQAIEGSQILIVVFSK 288
Query: 80 NYASSSFCLDELDHIIHCYKTKGRPVLPVFFGVDPSHVRHHKGSYGEALAEHEKRFQNDP 139
YASS++CL EL I K + VLPV V PS VR G+YGEA +HE+RF+ D
Sbjct: 289 YYASSTWCLQELAKIADGIVGKRQTVLPVVCDVTPSEVRKQSGNYGEAFLKHEERFKED- 465
Query: 140 KNMERLQGWKDALSQAANLSGY 161
+E +Q W+ AL++ A+LSG+
Sbjct: 466 --LEMVQRWRKALAEVADLSGW 525
>CB828263
Length = 570
Score = 114 bits (284), Expect = 7e-26
Identities = 54/109 (49%), Positives = 81/109 (73%)
Frame = +2
Query: 53 LQRGNEITPSLLKAIEESRIFIPVFSINYASSSFCLDELDHIIHCYKTKGRPVLPVFFGV 112
LQRG+EI+ SLL+AIEE+++ + VFS NY +S +CLDEL I+ C +T+G+ VLPVF+ +
Sbjct: 8 LQRGDEISSSLLRAIEEAKLSVIVFSKNYGNSKWCLDELVKILECKRTRGQIVLPVFYDI 187
Query: 113 DPSHVRHHKGSYGEALAEHEKRFQNDPKNMERLQGWKDALSQAANLSGY 161
DPSHVR+ G+Y EA +H + ++++Q W++AL +AANLSG+
Sbjct: 188 DPSHVRNQTGTYAEAFVKHGQ--------VDKVQKWREALREAANLSGW 310
>TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing protein
TSDC, partial (12%)
Length = 701
Score = 109 bits (273), Expect = 1e-24
Identities = 59/128 (46%), Positives = 79/128 (61%)
Frame = +1
Query: 35 LYKALTDKGINTFIDDNGLQRGNEITPSLLKAIEESRIFIPVFSINYASSSFCLDELDHI 94
LY AL +G TF+DD GL GNEI SLL A E+SR+ I VFS NY SS+CLDEL I
Sbjct: 1 LYHALRREGFKTFMDDEGLVGGNEIAKSLLDASEKSRLSIIVFSENYGYSSWCLDELVKI 180
Query: 95 IHCYKTKGRPVLPVFFGVDPSHVRHHKGSYGEALAEHEKRFQNDPKNMERLQGWKDALSQ 154
+ C +TK + V P+F+ V+ S V + SY A+ HEK + D +++ W+ ALS
Sbjct: 181 VECMETKKQLVWPIFYKVEKSDVTSQENSYEHAMIGHEKNYGKDSDEVKK---WRSALSA 351
Query: 155 AANLSGYH 162
A L G++
Sbjct: 352 MAKLEGHN 375
>BP045440
Length = 535
Score = 108 bits (269), Expect = 4e-24
Identities = 64/149 (42%), Positives = 86/149 (56%), Gaps = 2/149 (1%)
Frame = -3
Query: 15 KYQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDDNGLQRGNEITPSLLKAIEESRIFI 74
+YQ+F+SFRG DTR FT LY+ L +G TF DD L+ G+ I LL IEESR I
Sbjct: 530 RYQIFISFRGMDTRDDFTKPLYQGLCREGFVTFKDDESLEGGSPI-EKLLDDIEESRFAI 354
Query: 75 PVFSINYASSSFCLDELDHIIHCYKTKGRP--VLPVFFGVDPSHVRHHKGSYGEALAEHE 132
+ S NYA S +CL EL I+ C +G+ VLP V P+ VRH Y +A+A+HE
Sbjct: 353 IILSKNYAESEWCLKELSKILECKDQEGKNQLVLPSSTEVTPTEVRHVINRYADAMAKHE 174
Query: 133 KRFQNDPKNMERLQGWKDALSQAANLSGY 161
K + + + +Q WK AL L+G+
Sbjct: 173 K----NGIDSKTIQAWKKALFDVCTLTGF 99
>BP065014
Length = 498
Score = 95.9 bits (237), Expect = 2e-20
Identities = 54/114 (47%), Positives = 70/114 (61%)
Frame = -2
Query: 47 FIDDNGLQRGNEITPSLLKAIEESRIFIPVFSINYASSSFCLDELDHIIHCYKTKGRPVL 106
F DD L+ G I LL AIEESR+ I V S N+A S +CL EL I+ C K K VL
Sbjct: 497 FKDDLSLEDGAPIE-ELLGAIEESRVAIVVLSENFADSKWCLKELVKILDCRKKKKPLVL 321
Query: 107 PVFFGVDPSHVRHHKGSYGEALAEHEKRFQNDPKNMERLQGWKDALSQAANLSG 160
P+F+ V+P+++RH KG YGEA+AEHEK+ D + + W ALS + L G
Sbjct: 320 PIFYKVEPTNIRHLKGRYGEAMAEHEKKLGKDSQTVRE---WTQALSDISYLKG 168
>BP065724
Length = 495
Score = 69.3 bits (168), Expect = 2e-12
Identities = 31/82 (37%), Positives = 53/82 (63%)
Frame = -1
Query: 81 YASSSFCLDELDHIIHCYKTKGRPVLPVFFGVDPSHVRHHKGSYGEALAEHEKRFQNDPK 140
YA SS+CL+E+ I+ C + + V P+F+ V+PS VRH + SY +A+ + E R+ K
Sbjct: 495 YADSSWCLEEVVKILECKQKNDQLVWPIFYKVEPSDVRHQRNSYEKAMIKQETRY---GK 325
Query: 141 NMERLQGWKDALSQAANLSGYH 162
+ E+++ W+ +LSQ +L +H
Sbjct: 324 DSEKVKKWRSSLSQVCDLKAFH 259
>TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like, partial
(5%)
Length = 689
Score = 68.6 bits (166), Expect = 4e-12
Identities = 30/62 (48%), Positives = 44/62 (70%)
Frame = -2
Query: 6 SSTSISYDYKYQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDDNGLQRGNEITPSLLK 65
SS+S ++ + Y VF++FRG DTR+ F +LY AL++ G+N F+DD L+RG E+ P L K
Sbjct: 232 SSSSSNHQWIYDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENLERGLELEPELQK 53
Query: 66 AI 67
I
Sbjct: 52 LI 47
>TC12663 weakly similar to UP|Q84ZV8 (Q84ZV8) R 3 protein, partial (4%)
Length = 494
Score = 51.6 bits (122), Expect(2) = 1e-10
Identities = 26/45 (57%), Positives = 32/45 (70%)
Frame = +3
Query: 11 SYDYKYQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDDNGLQR 55
S+ + VFL+FRGSDT +GF L K+L DKGI TFI+D LQR
Sbjct: 12 SHVLTFNVFLNFRGSDTCHGFISFLCKSLLDKGIYTFINDEELQR 146
Score = 32.0 bits (71), Expect(2) = 1e-10
Identities = 15/24 (62%), Positives = 18/24 (74%)
Frame = +2
Query: 52 GLQRGNEITPSLLKAIEESRIFIP 75
G +EITPSL+KAIE +RI IP
Sbjct: 134 GASERDEITPSLVKAIERTRIAIP 205
>AI967395
Length = 205
Score = 63.5 bits (153), Expect = 1e-10
Identities = 30/67 (44%), Positives = 46/67 (67%)
Frame = +3
Query: 67 IEESRIFIPVFSINYASSSFCLDELDHIIHCYKTKGRPVLPVFFGVDPSHVRHHKGSYGE 126
I+ESR+ I VFS +YA S+ CL+EL +I+ + V PV++GV+ +RH +G YGE
Sbjct: 3 IQESRLIIVVFSEHYAVSASCLNELVNIVDVMIMNNQLVWPVYYGVEAPEIRHQRGRYGE 182
Query: 127 ALAEHEK 133
A+A+ E+
Sbjct: 183 AMAKFEE 203
>TC15876 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing
protein TSDC, partial (13%)
Length = 558
Score = 54.7 bits (130), Expect = 5e-08
Identities = 24/69 (34%), Positives = 43/69 (61%)
Frame = +1
Query: 94 IIHCYKTKGRPVLPVFFGVDPSHVRHHKGSYGEALAEHEKRFQNDPKNMERLQGWKDALS 153
I+ C + + V P+F+ V+PS VRH + SY +A+ + E R+ K+ E+++ W+ +LS
Sbjct: 16 ILECXQKNDQLVWPIFYKVEPSDVRHQRNSYEKAMIKPETRY---GKDSEKVKKWRSSLS 186
Query: 154 QAANLSGYH 162
Q +L +H
Sbjct: 187 QVCDLKAFH 213
>CB829528
Length = 188
Score = 53.1 bits (126), Expect = 2e-07
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 619 YLTHIPDVSGLSNLEKLSFEYCKNLITIHNSIGHLNKLERLSAFGCRTLKRFPP-LGLAS 677
+LT +P++S L LS + C +L+TIH S+G L L LSA GC LK F P + L S
Sbjct: 2 FLTELPNLSAAPFLRNLSLDNCPSLVTIHESVGFLENLRSLSAKGCTQLKIFVPCIKLTS 181
Query: 678 LK 679
L+
Sbjct: 182 LE 187
>TC12592
Length = 534
Score = 52.4 bits (124), Expect = 3e-07
Identities = 25/56 (44%), Positives = 35/56 (61%)
Frame = +3
Query: 105 VLPVFFGVDPSHVRHHKGSYGEALAEHEKRFQNDPKNMERLQGWKDALSQAANLSG 160
VLPVF+GV+P+ +R+ KG +GEA+AE E +F D + WK AL + L G
Sbjct: 9 VLPVFYGVEPTDIRNLKGKFGEAMAEIENKFGKDSNTIHE---WKQALRDISYLKG 167
>AV406565
Length = 207
Score = 51.2 bits (121), Expect = 6e-07
Identities = 28/55 (50%), Positives = 38/55 (68%)
Frame = +2
Query: 5 SSSTSISYDYKYQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDDNGLQRGNEI 59
S+++S + K+ VFLSFRG DTRY TG+L LT + T+ID + LQRG+EI
Sbjct: 44 STTSSSAPQQKHDVFLSFRGEDTRYTCTGHLQATLTRLQVKTYIDYD-LQRGDEI 205
>AV408271
Length = 409
Score = 47.8 bits (112), Expect = 7e-06
Identities = 25/45 (55%), Positives = 29/45 (63%)
Frame = +1
Query: 15 KYQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDDNGLQRGNEI 59
KY VF+SFRG D R GF +L A K IN F+DD L+RG EI
Sbjct: 277 KYDVFVSFRGEDIRDGFLSHLADAFRQKKINAFMDDK-LKRGQEI 408
>AW428699
Length = 319
Score = 46.6 bits (109), Expect = 1e-05
Identities = 22/45 (48%), Positives = 30/45 (65%)
Frame = +2
Query: 432 CLFGYCLLHQRM*IGESQTDTSCSLWLFHRKPHWSVG**VSHKY* 476
C +CLL +R+ +G T TSCSLWL + H S+G**+SH +*
Sbjct: 146 CFS*HCLLRRRVSLGRCSTYTSCSLWLLRYRLHKSIG**ISHTH* 280
>TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing
protein TSDC, partial (11%)
Length = 494
Score = 46.6 bits (109), Expect = 1e-05
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 105 VLPVFFGVDPSHVRHHKGSYGEALAEHEKRFQNDPKNMERLQGWKDALSQAANLSGYH 162
V P+F+ + S V + SYG A+ HE F K+ E++Q WK ALS+ A L G H
Sbjct: 10 VWPIFYEISXSDVSNQTKSYGHAMLAHENSF---GKDSEKVQKWKSALSEMAFLQGEH 174
>BP068235
Length = 511
Score = 42.0 bits (97), Expect(2) = 3e-05
Identities = 25/66 (37%), Positives = 34/66 (50%), Gaps = 1/66 (1%)
Frame = -1
Query: 88 LDELDHIIHCYKTKGRPVLPVFFGVDPSHVRHHKGSYGEALA-EHEKRFQNDPKNMERLQ 146
L L + C K K + + P + V+PS +R+ SYG ALA F ND E++Q
Sbjct: 475 LMNLSRFLECKKMKNQLLWPCPYKVEPSDIRYRPSSYGTALA*TRTDAFGND---SEKIQ 305
Query: 147 GWKDAL 152
WK AL
Sbjct: 304 TWKSAL 287
Score = 22.7 bits (47), Expect(2) = 3e-05
Identities = 11/17 (64%), Positives = 12/17 (69%)
Frame = -3
Query: 78 SINYASSSFCLDELDHI 94
S NYA S+ CLDEL I
Sbjct: 506 SENYAYSARCLDELVQI 456
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.347 0.151 0.545
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,378,539
Number of Sequences: 28460
Number of extensions: 271469
Number of successful extensions: 3282
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 3196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3268
length of query: 751
length of database: 4,897,600
effective HSP length: 97
effective length of query: 654
effective length of database: 2,136,980
effective search space: 1397584920
effective search space used: 1397584920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC138133.8