BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138133.7 + phase: 0 /pseudo
(1245 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidat... 140 1e-33
AV406755 119 3e-27
AV779547 119 3e-27
CB828263 111 8e-25
TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-contain... 104 1e-22
BP045440 99 4e-21
BP065014 89 3e-18
BP065724 72 4e-13
TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like... 66 3e-11
AI967395 65 5e-11
TC12663 weakly similar to UP|Q84ZV8 (Q84ZV8) R 3 protein, partia... 54 6e-11
AV778571 63 3e-10
TC15876 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-... 55 7e-08
TC12592 51 1e-06
AV406565 51 1e-06
BP068235 40 1e-04
TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-... 44 1e-04
AV777598 43 3e-04
AV408271 42 5e-04
AW428699 42 8e-04
>TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidate
resistance protein KR1, partial (6%)
Length = 586
Score = 140 bits (353), Expect = 1e-33
Identities = 72/150 (48%), Positives = 102/150 (68%)
Frame = +1
Query: 15 AFTYQVFLSFRGTDTRYGFTGNLYKALTDKGIHTFIDENDLRRGDEITPALLKAIDESRI 74
+F Y VF+S +DTR+GF+G+LY AL+DKGI TFID+ R D ++ KAI+ SRI
Sbjct: 94 SFIYDVFISLITSDTRFGFSGDLYTALSDKGILTFIDDGLPRPDDIMSTVNSKAIESSRI 273
Query: 75 FIPVFSIKYASSSFCLDELVHIIHCYTTKGRVVLPVFFGVEPSHVRHHKGSYGQALAEHK 134
I V S YASSSFCLDEL++I+ KG ++ PVF+ VEPS VR+ KG +G+A A H+
Sbjct: 274 AIVVISENYASSSFCLDELMYILKRREEKGLLIWPVFYQVEPSDVRYQKGGFGKAFASHE 453
Query: 135 KRFQNDEDNIKRLQRWKVALSQAANFSGYH 164
+RF +D ++++W+ AL Q A+ +H
Sbjct: 454 ERFGSDS---AKVRKWRNALKQVADLKAFH 534
>AV406755
Length = 425
Score = 119 bits (298), Expect = 3e-27
Identities = 58/114 (50%), Positives = 83/114 (71%)
Frame = +3
Query: 16 FTYQVFLSFRGTDTRYGFTGNLYKALTDKGIHTFIDENDLRRGDEITPALLKAIDESRIF 75
++Y VFLSFRG ++R FT +LY AL + GI F+D N+L+RG++I+ +LLKAI++SRI
Sbjct: 78 WSYDVFLSFRGEESRRSFTSHLYTALKNAGIKVFMD-NELQRGEDISSSLLKAIEDSRIA 254
Query: 76 IPVFSIKYASSSFCLDELVHIIHCYTTKGRVVLPVFFGVEPSHVRHHKGSYGQA 129
I +FS Y S +CLDEL II C T G+ V+PVF+ V+PS +R +G+ G+A
Sbjct: 255 IIIFSTNYTGSKWCLDELEKIIECQRTIGQEVMPVFYNVDPSDIRKQRGTVGEA 416
>AV779547
Length = 556
Score = 119 bits (298), Expect = 3e-27
Identities = 65/142 (45%), Positives = 91/142 (63%)
Frame = +1
Query: 22 LSFRGTDTRYGFTGNLYKALTDKGIHTFIDENDLRRGDEITPALLKAIDESRIFIPVFSI 81
+SFRG DTR FT +L AL KG TF D+ LR+G I+ L++AI+ S+I I VFS
Sbjct: 109 VSFRGEDTRNNFTDHLLGALYGKGFVTFKDDTMLRKGKNISTELIQAIEGSQILIVVFSK 288
Query: 82 KYASSSFCLDELVHIIHCYTTKGRVVLPVFFGVEPSHVRHHKGSYGQALAEHKKRFQNDE 141
YASS++CL EL I K + VLPV V PS VR G+YG+A +H++RF+ D
Sbjct: 289 YYASSTWCLQELAKIADGIVGKRQTVLPVVCDVTPSEVRKQSGNYGEAFLKHEERFKED- 465
Query: 142 DNIKRLQRWKVALSQAANFSGY 163
++ +QRW+ AL++ A+ SG+
Sbjct: 466 --LEMVQRWRKALAEVADLSGW 525
>CB828263
Length = 570
Score = 111 bits (277), Expect = 8e-25
Identities = 50/110 (45%), Positives = 79/110 (71%)
Frame = +2
Query: 54 DLRRGDEITPALLKAIDESRIFIPVFSIKYASSSFCLDELVHIIHCYTTKGRVVLPVFFG 113
DL+RGDEI+ +LL+AI+E+++ + VFS Y +S +CLDELV I+ C T+G++VLPVF+
Sbjct: 5 DLQRGDEISSSLLRAIEEAKLSVIVFSKNYGNSKWCLDELVKILECKRTRGQIVLPVFYD 184
Query: 114 VEPSHVRHHKGSYGQALAEHKKRFQNDEDNIKRLQRWKVALSQAANFSGY 163
++PSHVR+ G+Y +A +H + ++Q+W+ AL +AAN SG+
Sbjct: 185 IDPSHVRNQTGTYAEAFVKH--------GQVDKVQKWREALREAANLSGW 310
>TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing protein
TSDC, partial (12%)
Length = 701
Score = 104 bits (259), Expect = 1e-22
Identities = 55/128 (42%), Positives = 78/128 (59%)
Frame = +1
Query: 37 LYKALTDKGIHTFIDENDLRRGDEITPALLKAIDESRIFIPVFSIKYASSSFCLDELVHI 96
LY AL +G TF+D+ L G+EI +LL A ++SR+ I VFS Y SS+CLDELV I
Sbjct: 1 LYHALRREGFKTFMDDEGLVGGNEIAKSLLDASEKSRLSIIVFSENYGYSSWCLDELVKI 180
Query: 97 IHCYTTKGRVVLPVFFGVEPSHVRHHKGSYGQALAEHKKRFQNDEDNIKRLQRWKVALSQ 156
+ C TK ++V P+F+ VE S V + SY A+ H+K + D D +K +W+ ALS
Sbjct: 181 VECMETKKQLVWPIFYKVEKSDVTSQENSYEHAMIGHEKNYGKDSDEVK---KWRSALSA 351
Query: 157 AANFSGYH 164
A G++
Sbjct: 352 MAKLEGHN 375
>BP045440
Length = 535
Score = 99.0 bits (245), Expect = 4e-21
Identities = 62/148 (41%), Positives = 82/148 (54%), Gaps = 2/148 (1%)
Frame = -3
Query: 18 YQVFLSFRGTDTRYGFTGNLYKALTDKGIHTFIDENDLRRGDEITPALLKAIDESRIFIP 77
YQ+F+SFRG DTR FT LY+ L +G TF D+ L G I LL I+ESR I
Sbjct: 527 YQIFISFRGMDTRDDFTKPLYQGLCREGFVTFKDDESLEGGSPI-EKLLDDIEESRFAII 351
Query: 78 VFSIKYASSSFCLDELVHIIHCYTTKGR--VVLPVFFGVEPSHVRHHKGSYGQALAEHKK 135
+ S YA S +CL EL I+ C +G+ +VLP V P+ VRH Y A+A+H+K
Sbjct: 350 ILSKNYAESEWCLKELSKILECKDQEGKNQLVLPSSTEVTPTEVRHVINRYADAMAKHEK 171
Query: 136 RFQNDEDNIKRLQRWKVALSQAANFSGY 163
N D+ K +Q WK AL +G+
Sbjct: 170 ---NGIDS-KTIQAWKKALFDVCTLTGF 99
>BP065014
Length = 498
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/114 (42%), Positives = 68/114 (58%)
Frame = -2
Query: 49 FIDENDLRRGDEITPALLKAIDESRIFIPVFSIKYASSSFCLDELVHIIHCYTTKGRVVL 108
F D+ L G I LL AI+ESR+ I V S +A S +CL ELV I+ C K +VL
Sbjct: 497 FKDDLSLEDGAPIEE-LLGAIEESRVAIVVLSENFADSKWCLKELVKILDCRKKKKPLVL 321
Query: 109 PVFFGVEPSHVRHHKGSYGQALAEHKKRFQNDEDNIKRLQRWKVALSQAANFSG 162
P+F+ VEP+++RH KG YG+A+AEH+K+ D ++ W ALS + G
Sbjct: 320 PIFYKVEPTNIRHLKGRYGEAMAEHEKKLGKDSQTVR---EWTQALSDISYLKG 168
>BP065724
Length = 495
Score = 72.4 bits (176), Expect = 4e-13
Identities = 31/82 (37%), Positives = 52/82 (62%)
Frame = -1
Query: 83 YASSSFCLDELVHIIHCYTTKGRVVLPVFFGVEPSHVRHHKGSYGQALAEHKKRFQNDED 142
YA SS+CL+E+V I+ C ++V P+F+ VEPS VRH + SY +A+ + + R+ D +
Sbjct: 495 YADSSWCLEEVVKILECKQKNDQLVWPIFYKVEPSDVRHQRNSYEKAMIKQETRYGKDSE 316
Query: 143 NIKRLQRWKVALSQAANFSGYH 164
+K +W+ +LSQ + +H
Sbjct: 315 KVK---KWRSSLSQVCDLKAFH 259
>TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like, partial
(5%)
Length = 689
Score = 66.2 bits (160), Expect = 3e-11
Identities = 30/65 (46%), Positives = 46/65 (70%)
Frame = -2
Query: 6 SSSSSSFSYAFTYQVFLSFRGTDTRYGFTGNLYKALTDKGIHTFIDENDLRRGDEITPAL 65
S SSSS ++ + Y VF++FRG DTR+ F +LY AL++ G++ F+D+ +L RG E+ P L
Sbjct: 238 SMSSSSSNHQWIYDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENLERGLELEPEL 59
Query: 66 LKAID 70
K I+
Sbjct: 58 QKLIN 44
>AI967395
Length = 205
Score = 65.5 bits (158), Expect = 5e-11
Identities = 30/67 (44%), Positives = 46/67 (67%)
Frame = +3
Query: 69 IDESRIFIPVFSIKYASSSFCLDELVHIIHCYTTKGRVVLPVFFGVEPSHVRHHKGSYGQ 128
I ESR+ I VFS YA S+ CL+ELV+I+ ++V PV++GVE +RH +G YG+
Sbjct: 3 IQESRLIIVVFSEHYAVSASCLNELVNIVDVMIMNNQLVWPVYYGVEAPEIRHQRGRYGE 182
Query: 129 ALAEHKK 135
A+A+ ++
Sbjct: 183 AMAKFEE 203
>TC12663 weakly similar to UP|Q84ZV8 (Q84ZV8) R 3 protein, partial (4%)
Length = 494
Score = 54.3 bits (129), Expect(2) = 6e-11
Identities = 24/45 (53%), Positives = 35/45 (77%)
Frame = +3
Query: 13 SYAFTYQVFLSFRGTDTRYGFTGNLYKALTDKGIHTFIDENDLRR 57
S+ T+ VFL+FRG+DT +GF L K+L DKGI+TFI++ +L+R
Sbjct: 12 SHVLTFNVFLNFRGSDTCHGFISFLCKSLLDKGIYTFINDEELQR 146
Score = 30.8 bits (68), Expect(2) = 6e-11
Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 4/26 (15%)
Frame = +2
Query: 56 RRG----DEITPALLKAIDESRIFIP 77
RRG DEITP+L+KAI+ +RI IP
Sbjct: 128 RRGASERDEITPSLVKAIERTRIAIP 205
>AV778571
Length = 452
Score = 62.8 bits (151), Expect = 3e-10
Identities = 50/127 (39%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Frame = +2
Query: 608 IEQLSIFNPNTRCLRTSKFRKVIVSIL*EFNYNSQFSWIPKQT*NLRCKILHQAPECSTF 667
IE + I+N NT + + KFRK I+ I *EFN N + SWI + T*NL L Q + ST
Sbjct: 35 IE*V*IYNTNT*FVWSPKFRKTIICI**EFNQNPRVSWILE*T*NLGY*GLLQDQDFSTH 214
Query: 668 TTALS*EIGTRHV*ESQEFSRIIMQDDKFKRYLVE*NLH-GISIFNSKSQ*T*SLTNISM 726
LS* + + + EFSR I +D K Y + H G +IF+ KS + +
Sbjct: 215 EVGLS*RTVSFTLLKP*EFSRNISKDGKHNTYWCVPHSHKGTAIFDWKSHSASKVRTAWL 394
Query: 727 WNAQVPK 733
WNA V K
Sbjct: 395 WNASVTK 415
>TC15876 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing
protein TSDC, partial (13%)
Length = 558
Score = 55.1 bits (131), Expect = 7e-08
Identities = 23/69 (33%), Positives = 41/69 (59%)
Frame = +1
Query: 96 IIHCYTTKGRVVLPVFFGVEPSHVRHHKGSYGQALAEHKKRFQNDEDNIKRLQRWKVALS 155
I+ C ++V P+F+ VEPS VRH + SY +A+ + + R+ D + +K +W+ +LS
Sbjct: 16 ILECXQKNDQLVWPIFYKVEPSDVRHQRNSYEKAMIKPETRYGKDSEKVK---KWRSSLS 186
Query: 156 QAANFSGYH 164
Q + +H
Sbjct: 187 QVCDLKAFH 213
>TC12592
Length = 534
Score = 51.2 bits (121), Expect = 1e-06
Identities = 24/58 (41%), Positives = 37/58 (63%)
Frame = +3
Query: 105 RVVLPVFFGVEPSHVRHHKGSYGQALAEHKKRFQNDEDNIKRLQRWKVALSQAANFSG 162
++VLPVF+GVEP+ +R+ KG +G+A+AE + +F D + I WK AL + G
Sbjct: 3 QLVLPVFYGVEPTDIRNLKGKFGEAMAEIENKFGKDSNTI---HEWKQALRDISYLKG 167
>AV406565
Length = 207
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/55 (52%), Positives = 37/55 (66%)
Frame = +2
Query: 7 SSSSSFSYAFTYQVFLSFRGTDTRYGFTGNLYKALTDKGIHTFIDENDLRRGDEI 61
S++SS + + VFLSFRG DTRY TG+L LT + T+ID DL+RGDEI
Sbjct: 44 STTSSSAPQQKHDVFLSFRGEDTRYTCTGHLQATLTRLQVKTYID-YDLQRGDEI 205
>BP068235
Length = 511
Score = 40.4 bits (93), Expect(2) = 1e-04
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -1
Query: 90 LDELVHIIHCYTTKGRVVLPVFFGVEPSHVRHHKGSYGQALA-EHKKRFQNDEDNIKRLQ 148
L L + C K +++ P + VEPS +R+ SYG ALA F ND + ++Q
Sbjct: 475 LMNLSRFLECKKMKNQLLWPCPYKVEPSDIRYRPSSYGTALA*TRTDAFGNDSE---KIQ 305
Query: 149 RWKVAL 154
WK AL
Sbjct: 304 TWKSAL 287
Score = 23.1 bits (48), Expect(2) = 1e-04
Identities = 11/17 (64%), Positives = 12/17 (69%)
Frame = -3
Query: 80 SIKYASSSFCLDELVHI 96
S YA S+ CLDELV I
Sbjct: 506 SENYAYSARCLDELVQI 456
>TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing
protein TSDC, partial (11%)
Length = 494
Score = 44.3 bits (103), Expect = 1e-04
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +1
Query: 105 RVVLPVFFGVEPSHVRHHKGSYGQALAEHKKRFQNDEDNIKRLQRWKVALSQAANFSGYH 164
++V P+F+ + S V + SYG A+ H+ F D + ++Q+WK ALS+ A G H
Sbjct: 4 QLVWPIFYEISXSDVSNQTKSYGHAMLAHENSFGKDSE---KVQKWKSALSEMAFLQGEH 174
>AV777598
Length = 371
Score = 42.7 bits (99), Expect = 3e-04
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3
Query: 15 AFTYQVFLSFRGTDTRYGFTGNLY 38
+FTY VFLSF G DTR+ FTGNLY
Sbjct: 300 SFTYDVFLSFCGVDTRFSFTGNLY 371
>AV408271
Length = 409
Score = 42.4 bits (98), Expect = 5e-04
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = +1
Query: 18 YQVFLSFRGTDTRYGFTGNLYKALTDKGIHTFIDENDLRRGDEI 61
Y VF+SFRG D R GF +L A K I+ F+D+ L+RG EI
Sbjct: 280 YDVFVSFRGEDIRDGFLSHLADAFRQKKINAFMDDK-LKRGQEI 408
>AW428699
Length = 319
Score = 41.6 bits (96), Expect = 8e-04
Identities = 26/61 (42%), Positives = 33/61 (53%)
Frame = +2
Query: 414 *KDPRDS*SKL*CFGGRAAECLSRHCLLLQRMWIGSG*RYTSCSLWPLHNTSSRSVG*KI 473
*K+P K+ F C S HCLL +R+ +G YTSCSLW L +S+G* I
Sbjct: 86 *KNP*HGKKKIL*FEDGRETCFS*HCLLRRRVSLGRCSTYTSCSLWLLRYRLHKSIG**I 265
Query: 474 S 474
S
Sbjct: 266 S 268
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.346 0.151 0.503
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,265,559
Number of Sequences: 28460
Number of extensions: 328264
Number of successful extensions: 3548
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 3388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3492
length of query: 1245
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1144
effective length of database: 2,023,140
effective search space: 2314472160
effective search space used: 2314472160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC138133.7