BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138133.4 + phase: 0
(476 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10576 similar to UP|Q93ZQ3 (Q93ZQ3) AT3g63200/F16M2_50, partia... 30 0.86
TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor,... 28 2.5
TC18734 similar to UP|Q8LFM3 (Q8LFM3) Pectinesterase-like protei... 28 3.3
TC14892 similar to UP|Q9Z0W6 (Q9Z0W6) Pax transcription activati... 28 3.3
TC15966 similar to UP|Q8L5C2 (Q8L5C2) 110 kDa 4SNc-tudor protein... 28 4.3
AV778810 28 4.3
TC18660 27 5.6
TC11148 homologue to UP|Q7X9B8 (Q7X9B8) Ferrous ion membrane tra... 27 5.6
TC11706 homologue to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2... 27 5.6
BP055755 27 7.3
TC11869 27 9.5
TC9686 similar to GB|CAA20565.1|3549654|ATT16L1 metal-transporti... 27 9.5
>TC10576 similar to UP|Q93ZQ3 (Q93ZQ3) AT3g63200/F16M2_50, partial (39%)
Length = 751
Score = 30.0 bits (66), Expect = 0.86
Identities = 23/89 (25%), Positives = 35/89 (38%), Gaps = 11/89 (12%)
Frame = -2
Query: 292 SKPISLATS---------PEFFFYTNAPTGQRKAFMDAWSKVRRKSVKHLGVRSGIAHEA 342
S P+S +TS P + T + Q+KAF + WS V + G+ H
Sbjct: 456 SNPLSFSTSSSVVASVPKPNAWILT*SVRFQQKAFPNIWSTVSETPSSTMPTTDGVEHVR 277
Query: 343 YTQWVIDRAEEIGM--PYPAMRYVSSSTP 369
+ + + P+P R SSTP
Sbjct: 276 WFSFSFSFSHAFAFDDPFPRERTRRSSTP 190
>TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor, partial
(74%)
Length = 1591
Score = 28.5 bits (62), Expect = 2.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 196 RTLKG-RGYILCCISLLYRWFISHLP 220
R LK RG++ CC + WF+S LP
Sbjct: 42 RVLKSKRGFLCCCCWEFFSWFLSPLP 119
>TC18734 similar to UP|Q8LFM3 (Q8LFM3) Pectinesterase-like protein, partial
(47%)
Length = 929
Score = 28.1 bits (61), Expect = 3.3
Identities = 11/31 (35%), Positives = 18/31 (57%)
Frame = -1
Query: 114 DVSNHLITKSHIRGFTSKYLLDQANLSTTRQ 144
+V NH++ ++ +T K +DQ NL T Q
Sbjct: 218 EVENHVVISYQVKSWTRKLTIDQNNLLRTAQ 126
>TC14892 similar to UP|Q9Z0W6 (Q9Z0W6) Pax transcription activation domain
interacting protein PTIP, partial (3%)
Length = 1502
Score = 28.1 bits (61), Expect = 3.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 411 LDGRDEQKTHDNLMLKKELAKVRRELEEK 439
L +DEQ TH NL K ++ + RE+ K
Sbjct: 1193 LSPKDEQTTHQNLNFSKHVSHLAREITTK 1107
>TC15966 similar to UP|Q8L5C2 (Q8L5C2) 110 kDa 4SNc-tudor protein, partial
(25%)
Length = 891
Score = 27.7 bits (60), Expect = 4.3
Identities = 20/72 (27%), Positives = 37/72 (50%), Gaps = 7/72 (9%)
Frame = +1
Query: 407 LIMTLDGRDEQKTHDNLMLKKELAKV-------RRELEEKDELLMRDSKRARGRRDFFAR 459
L +TL D + + + ML++ LA++ R+E + + L + AR +R +
Sbjct: 502 LAVTLVAVDAEISVNAAMLQEGLARMEKRNRWDRKERKAGLDSLEKFQDEARTKRRGMWQ 681
Query: 460 YGDSDSESDDAP 471
YGD +S+ +D P
Sbjct: 682 YGDVESDEEDGP 717
>AV778810
Length = 497
Score = 27.7 bits (60), Expect = 4.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 296 SLATSPEFFFYTNAPTGQRKAFMDAWSKVRRKSVKHLGVRS 336
S ATSP FFF +A T F+ R+S KH+ R+
Sbjct: 48 SAATSPPFFFLVDAETAPTTLFLRFLQITHRRS-KHISNRT 167
>TC18660
Length = 893
Score = 27.3 bits (59), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = +2
Query: 352 EEIGMPYPAMRYVSSSTPSMPLP 374
E MP P+M ++S +TP + LP
Sbjct: 800 EAFDMPTPSMEWISGTTPHLKLP 868
>TC11148 homologue to UP|Q7X9B8 (Q7X9B8) Ferrous ion membrane transport
protein DMT1, partial (33%)
Length = 622
Score = 27.3 bits (59), Expect = 5.6
Identities = 11/13 (84%), Positives = 12/13 (91%)
Frame = -1
Query: 366 SSTPSMPLPLLPT 378
S TPS+PLPLLPT
Sbjct: 118 SHTPSLPLPLLPT 80
>TC11706 homologue to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2 , partial
(15%)
Length = 472
Score = 27.3 bits (59), Expect = 5.6
Identities = 15/51 (29%), Positives = 21/51 (40%)
Frame = +1
Query: 164 LDNFVDMNAIEIFHSKNPVPTLLADTYHAIHDRTLKGRGYILCCISLLYRW 214
L FV + +F P L YH IH L+ +L S+L+ W
Sbjct: 172 LKGFVRCFFLPLFQLITEPPLLQNSEYHRIHFEMLRCSQDVLALFSILWNW 324
>BP055755
Length = 273
Score = 26.9 bits (58), Expect = 7.3
Identities = 13/42 (30%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Frame = -3
Query: 361 MRYVSSSTPS-MPLPLLPTTQDMYQEHLAMESREKQVWKARY 401
+++ S S P +P P P+T +QE A +R ++W+ +Y
Sbjct: 271 VKFPSHSNPCPIPPPYDPSTFPSFQEGKAYATRPVEIWEDKY 146
>TC11869
Length = 753
Score = 26.6 bits (57), Expect = 9.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 153 LLIYGLILFPNLDNFVDMNAIEIFHSKNPVPTLLADTYHAIHD 195
LL+ G + FV +++ H +PTLLA A+ D
Sbjct: 7 LLLPGQSVLVETSGFVIQQTLQVAHMVTVIPTLLASRVAAVSD 135
>TC9686 similar to GB|CAA20565.1|3549654|ATT16L1 metal-transporting P-type
ATPase (fragment) {Arabidopsis thaliana;} , partial (7%)
Length = 714
Score = 26.6 bits (57), Expect = 9.5
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 80 NLVGLPIAEKTPFTGPGTSLTPLVIAKDLYLKTSDVSNHLITKSHIRGFTSKYLLD 135
N+VG+PIA F GT LTP + + L + V + + K +LD
Sbjct: 48 NIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRFKFSSKQKQILD 215
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,953,493
Number of Sequences: 28460
Number of extensions: 111171
Number of successful extensions: 598
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of query: 476
length of database: 4,897,600
effective HSP length: 94
effective length of query: 382
effective length of database: 2,222,360
effective search space: 848941520
effective search space used: 848941520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC138133.4