TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138133.3 - phase: 0 /pseudo
         (430 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8006 similar to UP|Q9LVE9 (Q9LVE9) Genomic DNA, chromosome 3, ...    28  0.12
TC14821 homologue to UP|AAR12195 (AAR12195) Molecular chaperone ...    30  1.0
TC11995                                                                28  2.9
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k...    27  5.0
AV421981                                                               27  6.5
TC17257 similar to UP|Q89CE1 (Q89CE1) Blr7856 protein, partial (5%)    27  6.5
TC8946 homologue to GB|AAM66972.1|21617922|AY088650 pyridoxine b...    27  8.5
BI420843                                                               27  8.5

>TC8006 similar to UP|Q9LVE9 (Q9LVE9) Genomic DNA, chromosome 3, P1 clone:
           MIL23, partial (27%)
          Length = 1225

 Score = 28.1 bits (61), Expect(2) = 0.12
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = -1

Query: 361 YEARSSPDTYDMVSGVVAYADAQLGQEEVMSMTPQQWFEAMTHMREQIAPILTRRRAQRP 420
           Y  R   D YD +    +       Q E     P+      +H R  + P   RR+ +RP
Sbjct: 745 YRLREGKDGYDPIQNPGSLTRPGSFQPEQAPQIPRGGV-VNSHRRRNLLP--KRRQRKRP 575

Query: 421 RRRHHQQ 427
           RRR H++
Sbjct: 574 RRRRHRK 554



 Score = 23.1 bits (48), Expect(2) = 0.12
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 334 PQILPPIPRDLP 345
           PQ+LPPIP DLP
Sbjct: 863 PQLLPPIP-DLP 831


>TC14821 homologue to UP|AAR12195 (AAR12195) Molecular chaperone Hsp90-1,
           partial (29%)
          Length = 612

 Score = 29.6 bits (65), Expect = 1.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 333 HPQILPPIPRDLPRPANEEQIIAEQW 358
           HPQ+ PP P  LPRP +++     QW
Sbjct: 123 HPQLCPPRPSSLPRPHHQKS--PSQW 52


>TC11995 
          Length = 726

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 70  RDFYTSYLGRANVLAGTEDPEELEELARVRTYCVRCY 106
           R F T+YLGR  V+  T + ++ EE+   + + +R +
Sbjct: 298 RSFQTNYLGRLTVIHNTLEGKKKEEILFCQVFVLRVF 408


>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
           partial (16%)
          Length = 486

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 395 QQWFEAMTHMREQIAPILTRRRAQRPRRRHHQQ 427
           ++W   +        P   RRR  RP +RHHQQ
Sbjct: 335 RRWLRLLPRPSRLPNPTQLRRRHLRPLQRHHQQ 433


>AV421981 
          Length = 468

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 278 PRHPTDVRDLPPPSIVQMFVD 298
           P HPT +R LPPP+I    V+
Sbjct: 129 PLHPTLLRHLPPPTISTSLVE 191


>TC17257 similar to UP|Q89CE1 (Q89CE1) Blr7856 protein, partial (5%)
          Length = 614

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (63%), Gaps = 3/28 (10%)
 Frame = +2

Query: 328 YARVSHPQILPPI---PRDLPRPANEEQ 352
           YA+ SHP + PP+   P+D  RP + +Q
Sbjct: 143 YAQQSHPYMAPPMWPQPQDQQRPPSPDQ 226


>TC8946 homologue to GB|AAM66972.1|21617922|AY088650 pyridoxine
           biosynthesis protein-like {Arabidopsis thaliana;} ,
           partial (45%)
          Length = 503

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 405 REQIAPIL--TRRRAQRPRRRHHQQDQ 429
           R+Q  P+L  +R R+  PRRRHH + Q
Sbjct: 132 RDQEIPLLRQSRPRSDAPRRRHHGRRQ 212


>BI420843 
          Length = 377

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 400 AMTHMREQIAPILTRRRAQRPRRR 423
           AMTH R +   ++ RRR  RPR R
Sbjct: 208 AMTHQRRRCTGMMLRRRFGRPRWR 279


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,311,124
Number of Sequences: 28460
Number of extensions: 122191
Number of successful extensions: 852
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of query: 430
length of database: 4,897,600
effective HSP length: 93
effective length of query: 337
effective length of database: 2,250,820
effective search space: 758526340
effective search space used: 758526340
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)