TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138133.11 - phase: 0 
         (206 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)        98  2e-28
BP054462                                                               87  2e-18
BP046863                                                               60  2e-10
BP085845                                                               60  4e-10
AU089582                                                               45  9e-06
TC11563                                                                28  0.87
BP040614                                                               27  1.9
AV426792                                                               27  2.5
BP072713                                                               27  3.3
TC16411 similar to GB|AAP31965.1|30387599|BT006621 At4g21540 {Ar...    25  9.6
TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported]...    25  9.6

>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
          Length = 519

 Score = 97.8 bits (242), Expect(2) = 2e-28
 Identities = 46/79 (58%), Positives = 62/79 (78%)
 Frame = +3

Query: 75  RVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSNLHDVFHVSQLRKYV 134
           RV+PM GV R  K  KL+P+FIGP+++ ER+G+V+YR+ LPP LS +H VFHVS LRKY+
Sbjct: 3   RVSPMKGVLRFGKKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRKYL 182

Query: 135 ADPSHVIPRDDVQVRDNLT 153
            DPSHVI  +DVQ+  +L+
Sbjct: 183 YDPSHVIRHEDVQLDVHLS 239



 Score = 43.1 bits (100), Expect(2) = 2e-28
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +2

Query: 172 KEIPLVRVVWGGATGESLTWELESKMRDSYPELF 205
           K++  V+V+W G +GE  TWE E  MR+ YP LF
Sbjct: 296 KDVGSVKVLWRGPSGEEATWEAEDIMREKYPHLF 397


>BP054462 
          Length = 422

 Score = 87.4 bits (215), Expect = 2e-18
 Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
 Frame = +1

Query: 1   MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
           M+PF+ALYGR     L        +    DL     E +  +R  +  SQ   ++Y +K+
Sbjct: 28  MSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMRTYANKK 207

Query: 61  RKALEFQEGDHVFLRVTPMTGVGRALK-SRKLTPKFIGPYQISERIGTVAYRVGLPPHLS 119
           R+ +++Q GD VFL++ P      A K + KL+P++ GPY I  +IG VAYR+ LP H S
Sbjct: 208 RRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAH-S 384

Query: 120 NLHDVFHVSQLR 131
            +H VFHVS L+
Sbjct: 385 RVHPVFHVSLLK 420


>BP046863 
          Length = 580

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
 Frame = +1

Query: 31  LVQETTEKVKMIREKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGRAL-KSR 89
           L++E    +  +R  +  +Q + ++  +K R+ +++Q G+ VFL++ P      A  K++
Sbjct: 274 LIEERDALLLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQNLAQRKNQ 453

Query: 90  KLTPKFIGPYQISERIGTVAYRVGLPPHLSNLHDVFHVSQLRK 132
           KL+P+F GP+++ ER+  VAY + L    S +H VFH+S L K
Sbjct: 454 KLSPRFYGPFKVLERVVQVAY*LDLXSE-SRVHPVFHLSLLEK 579


>BP085845 
          Length = 464

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 35/106 (33%), Positives = 57/106 (53%)
 Frame = -2

Query: 87  KSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRDDV 146
           K RK   K IGP++I E +  +AY +    +L   H V HV+ L + + D S  I  + V
Sbjct: 421 KKRKTESKIIGPFKILEMVCLIAY*LTHSLYLLAAHIVLHVTLLWRNLYDQSQNICHEGV 242

Query: 147 QVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVVWGGATGESLTWE 192
            + ++ +    P+ + D KV+ +R K I  V+V+W G +G   +WE
Sbjct: 241 XLGEHWSHMEHPIVMVDMKVRCMRPKNIDDVKVIWRGLSG*EKSWE 104


>AU089582 
          Length = 383

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +3

Query: 1   MAPFEALYGRRCRTPLCWFESG 22
           MAPFEALYGRRCR+P+ WFE G
Sbjct: 318 MAPFEALYGRRCRSPIGWFEVG 383


>TC11563 
          Length = 470

 Score = 28.5 bits (62), Expect = 0.87
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 174 IPLVRVVWGGATGESLTWELESKMRDSYPE 203
           +P + + W GA   + TWEL S ++DS+P+
Sbjct: 8   VPQLLIQWEGAA--NCTWELLSYIQDSFPQ 91


>BP040614 
          Length = 504

 Score = 27.3 bits (59), Expect = 1.9
 Identities = 22/65 (33%), Positives = 30/65 (45%), Gaps = 4/65 (6%)
 Frame = +1

Query: 115 PPHLSNLHDVFHVSQLR----KYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALR 170
           PP+   L D+FH+S+ R    KY      +I   + QVRD L       R+D R    L 
Sbjct: 4   PPNY*GLRDLFHISKDRADSIKYEVF-VQMIEIYNEQVRDLLVSNGSNRRLDIRNNSQLN 180

Query: 171 GKEIP 175
           G  +P
Sbjct: 181 GLNVP 195


>AV426792 
          Length = 432

 Score = 26.9 bits (58), Expect = 2.5
 Identities = 15/40 (37%), Positives = 20/40 (49%)
 Frame = +1

Query: 33  QETTEKVKMIREKMKASQSRQKSYHDKRRKALEFQEGDHV 72
           QE   K +   EK KA ++  K+ HDK  +     EGD V
Sbjct: 280 QEARRKKQREEEKRKAEEAAAKATHDKTIEGGNQTEGDLV 399


>BP072713 
          Length = 403

 Score = 26.6 bits (57), Expect = 3.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 82  VGRALKSRKLTPKFIGPYQISERIGTV 108
           V + LKS K  P+  G Y  SER+G V
Sbjct: 162 VVQTLKSLKWPPRIPGYYDYSERVGVV 242


>TC16411 similar to GB|AAP31965.1|30387599|BT006621 At4g21540 {Arabidopsis
           thaliana;}, partial (24%)
          Length = 555

 Score = 25.0 bits (53), Expect = 9.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 9   GRRCRTPLCWFESGESVVLG 28
           GR C+ P+C    GE   LG
Sbjct: 119 GRTCKIPICHIPKGEGFQLG 178


>TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (10%)
          Length = 498

 Score = 25.0 bits (53), Expect = 9.6
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +3

Query: 77  TPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSNLHDVFHVSQLRKYVAD 136
           +P+  VGR  + R+   +      +  + GTV +R    P+LSN +    +S L+ +   
Sbjct: 42  SPVAVVGRRRRRRRRETQ--NNTDVKFKAGTVRHRNRTVPNLSNHNYQLSISLLQTHPPI 215

Query: 137 PSHVIPRDDVQVR 149
           P+  +P   + +R
Sbjct: 216 PTTPLPPPHLLLR 254


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,255,007
Number of Sequences: 28460
Number of extensions: 36244
Number of successful extensions: 199
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of query: 206
length of database: 4,897,600
effective HSP length: 86
effective length of query: 120
effective length of database: 2,450,040
effective search space: 294004800
effective search space used: 294004800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)