BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138131.5 + phase: 0 /partial
(155 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8962 homologue to UP|Q9M5M1 (Q9M5M1) 40S ribosomal protein S11... 301 3e-83
TC17384 homologue to UP|RS11_SOYBN (P17093) 40S ribosomal protei... 300 7e-83
TC12801 similar to UP|O77381 (O77381) 40S ribosomal protein S11,... 191 6e-50
BU494475 173 1e-44
BP060334 108 5e-25
TC19833 similar to GB|AAA84030.1|336392|ATHCPRPS17 ribosomal pro... 32 0.049
TC12601 similar to UP|Q9LTX6 (Q9LTX6) Genomic DNA, chromosome 5,... 31 0.083
TC11376 similar to GB|AAM61400.1|21537059|AY084835 pectate lyase... 27 1.2
TC11082 similar to UP|PFTA_PEA (O24304) Protein farnesyltransfer... 27 1.2
CB828220 27 2.0
TC15979 25 4.6
TC19340 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin at... 25 5.9
AU088834 25 5.9
TC12686 similar to UP|Q9FS24 (Q9FS24) Neoxanthin cleavage enzyme... 25 5.9
TC9506 similar to PIR|T04814|T04814 dihydrolipoamide S-succinylt... 25 7.8
TC8945 25 7.8
>TC8962 homologue to UP|Q9M5M1 (Q9M5M1) 40S ribosomal protein S11, complete
Length = 1037
Score = 301 bits (771), Expect = 3e-83
Identities = 143/155 (92%), Positives = 152/155 (97%)
Frame = +3
Query: 1 TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGN 60
TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRF+KS+GLGFKTPR+AI+G+YIDKKCPFTGN
Sbjct: 93 TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGSYIDKKCPFTGN 272
Query: 61 VSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHV 120
VS+RGRILAGTCHSAKM RTI+VRRNYLHFIKKYQRYEKRHSNIPAH+SPCFRVKEGDHV
Sbjct: 273 VSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHV 452
Query: 121 IIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
IIGQCRPLSKTVRFNVLKV+PAG SSGA KKAFTG
Sbjct: 453 IIGQCRPLSKTVRFNVLKVVPAG-SSGAVKKAFTG 554
>TC17384 homologue to UP|RS11_SOYBN (P17093) 40S ribosomal protein S11,
complete
Length = 666
Score = 300 bits (768), Expect = 7e-83
Identities = 144/155 (92%), Positives = 151/155 (96%)
Frame = +3
Query: 1 TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGN 60
TEKAFLKQPKVFL SKKSGKGKRPGKGGNRF+KS+GLGFKTPR+AI+GTYIDKKCPFTGN
Sbjct: 84 TEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGN 263
Query: 61 VSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHV 120
VSIRGRILAGTCHSAKM RTI+VRRNYLHFIKKYQRYEKRHSNIPAH+SPCFRVKEGDHV
Sbjct: 264 VSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHV 443
Query: 121 IIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
IIGQCRP+SKTVRFNVLKVIPAGSSSG KKAFTG
Sbjct: 444 IIGQCRPISKTVRFNVLKVIPAGSSSGV-KKAFTG 545
>TC12801 similar to UP|O77381 (O77381) 40S ribosomal protein S11, partial
(78%)
Length = 812
Score = 191 bits (484), Expect = 6e-50
Identities = 100/153 (65%), Positives = 114/153 (74%)
Frame = +1
Query: 2 EKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGNV 61
EKAF KQ V L G K+ G R++K+VGLG KTP EAIDG YIDKKCPFTG+V
Sbjct: 103 EKAFQKQAAVSLTG---GVSKKKG----RWYKNVGLGIKTPAEAIDGDYIDKKCPFTGDV 261
Query: 62 SIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVI 121
SIRGR+ G S KM RT+V+RR YLH+IKKY+R+EKRH NIPAH SPCFRVKEGD V
Sbjct: 262 SIRGRLFRGVVVSTKMRRTVVIRREYLHWIKKYKRFEKRHRNIPAHCSPCFRVKEGDQVT 441
Query: 122 IGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFT 154
IGQCRPLSKT+RFNVLK I ++ KKAFT
Sbjct: 442 IGQCRPLSKTIRFNVLK-IDRVAAVVESKKAFT 537
>BU494475
Length = 464
Score = 173 bits (439), Expect = 1e-44
Identities = 83/124 (66%), Positives = 99/124 (78%)
Frame = +3
Query: 30 RFFKSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIVVRRNYLH 89
R++K VGLG+KTP EAI+GTYIDKKCPFTG+VSIRGRIL G S KM RTI++RR+YLH
Sbjct: 33 RWYKDVGLGYKTPSEAINGTYIDKKCPFTGDVSIRGRILTGRVVSTKMTRTIIIRRDYLH 212
Query: 90 FIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAG 149
+I KY RYEKRH N+ AH SP FR++ GD V +GQCRPLSKTVRFNVL+V S + A
Sbjct: 213 YIPKYNRYEKRHKNLAAHASPAFRIEIGDTVTVGQCRPLSKTVRFNVLRV----SKNKAA 380
Query: 150 KKAF 153
K+F
Sbjct: 381 AKSF 392
>BP060334
Length = 339
Score = 108 bits (269), Expect = 5e-25
Identities = 53/56 (94%), Positives = 54/56 (95%)
Frame = -3
Query: 100 RHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
RHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG SSGA KKAFTG
Sbjct: 337 RHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG-SSGAVKKAFTG 173
>TC19833 similar to GB|AAA84030.1|336392|ATHCPRPS17 ribosomal protein S17
{Arabidopsis thaliana;} , partial (50%)
Length = 433
Score = 32.0 bits (71), Expect = 0.049
Identities = 25/85 (29%), Positives = 41/85 (47%)
Frame = +1
Query: 62 SIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVI 121
SI+G+++ ++T+ V L KY+R ++ AH P + K GD V
Sbjct: 142 SIQGKVVCSAS-----DKTVAVEVVRLAPHPKYKRRVRKKKKYQAH-DPENQFKVGDIVQ 303
Query: 122 IGQCRPLSKTVRFNVLKVIPAGSSS 146
+ + RP+SKT F L V G+ +
Sbjct: 304 LTKTRPISKTKAFLALPVPSKGAKN 378
>TC12601 similar to UP|Q9LTX6 (Q9LTX6) Genomic DNA, chromosome 5, TAC
clone:K9P8, partial (10%)
Length = 524
Score = 31.2 bits (69), Expect = 0.083
Identities = 9/29 (31%), Positives = 21/29 (72%)
Frame = -1
Query: 80 TIVVRRNYLHFIKKYQRYEKRHSNIPAHV 108
T++V +LH+I+ +QRY++ ++P ++
Sbjct: 449 TVMVEEAFLHYIRTFQRYKRELHHVPTYI 363
>TC11376 similar to GB|AAM61400.1|21537059|AY084835 pectate lyase-like
protein {Arabidopsis thaliana;} , partial (26%)
Length = 636
Score = 27.3 bits (59), Expect = 1.2
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -1
Query: 82 VVRRNYLHFIKKY--QRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 139
++R+ Y H +K+ QR H P P FRV +H+++G R K F+ L+V
Sbjct: 582 LLRQLYHHITRKHYPQRLILYH---PIPQRPRFRV---NHIVVGGIRHQIKLPTFSSLRV 421
Query: 140 IP 141
+P
Sbjct: 420 LP 415
>TC11082 similar to UP|PFTA_PEA (O24304) Protein
farnesyltransferase/geranylgeranyltransferase type I
alpha subunit (CAAX farnesyltransferase alpha subunit)
(Ras proteins prenyltransferase alpha) (FTase-alpha)
(Type I protein geranyl-geranyltransfer , partial (54%)
Length = 581
Score = 27.3 bits (59), Expect = 1.2
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 3/45 (6%)
Frame = +2
Query: 52 DKKCPFTGNVSIRGRILAG---TCHSAKMNRTIVVRRNYLHFIKK 93
++ CP T N+ + GRI +G KMN IVV +F+KK
Sbjct: 431 ERYCPLTPNIIMHGRIGSGFFKHLEDGKMNSIIVV-----NFLKK 550
>CB828220
Length = 533
Score = 26.6 bits (57), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 20 KGKRPGKGGNRFFKSVGLGFKTPREAIDGTY 50
KG G+ FK VG +T REAIDG +
Sbjct: 235 KGIWGSNNGDAPFKDVGFVDQTGREAIDGVF 143
>TC15979
Length = 623
Score = 25.4 bits (54), Expect = 4.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 95 QRYEKRHSNIPAHVSPCFRVK 115
QR+ +H +PA + CFR++
Sbjct: 494 QRHSSKHKYLPARLRXCFRLR 432
>TC19340 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin attachment
subunit precursor, partial (3%)
Length = 511
Score = 25.0 bits (53), Expect = 5.9
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = +3
Query: 108 VSPCFRVKEGDHVIIG 123
VS C+RV+ GDH +IG
Sbjct: 375 VSVCWRVETGDH*LIG 422
>AU088834
Length = 634
Score = 25.0 bits (53), Expect = 5.9
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = -3
Query: 94 YQRYEKRHSNIPAHVSPCFRVKEGDHVII 122
Y R+ SN P+H S CFR +E H +I
Sbjct: 92 YFRWVCYISNPPSHHSICFREREYVHNVI 6
>TC12686 similar to UP|Q9FS24 (Q9FS24) Neoxanthin cleavage enzyme, partial
(18%)
Length = 632
Score = 25.0 bits (53), Expect = 5.9
Identities = 14/39 (35%), Positives = 20/39 (50%)
Frame = +3
Query: 57 FTGNVSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQ 95
FT +SI + G+ + N+T+ LHF KKYQ
Sbjct: 219 FTPKISITFK--KGSTSTISSNKTVSCSLQTLHFPKKYQ 329
>TC9506 similar to PIR|T04814|T04814 dihydrolipoamide S-succinyltransferase
homolog F10M23.250 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (30%)
Length = 772
Score = 24.6 bits (52), Expect = 7.8
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = +1
Query: 52 DKKCPFTGNVSIRGRILAGTCHSAKMN 78
+++C F I RILAG C + K+N
Sbjct: 397 ERQCSFCDASKISWRILAGFCLTYKVN 477
>TC8945
Length = 616
Score = 24.6 bits (52), Expect = 7.8
Identities = 13/54 (24%), Positives = 27/54 (49%), Gaps = 10/54 (18%)
Frame = -2
Query: 48 GTYID---------KKCPFTGNVSIRGRILAGTCHSAKMN-RTIVVRRNYLHFI 91
G+Y+D + P ++S+ + + TCH +MN R + +++HF+
Sbjct: 426 GSYLDLITKL*AHVSQLPLVQSLSLTSKNGSSTCHLTRMNIR*VHPHHSFIHFL 265
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,751,056
Number of Sequences: 28460
Number of extensions: 36854
Number of successful extensions: 161
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of query: 155
length of database: 4,897,600
effective HSP length: 83
effective length of query: 72
effective length of database: 2,535,420
effective search space: 182550240
effective search space used: 182550240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC138131.5