BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138131.4 + phase: 0 /pseudo
(1189 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780705 117 1e-26
TC18710 111 8e-25
BP060613 89 3e-18
AV767121 86 5e-17
AV780221 69 3e-12
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 63 3e-10
BP085058 58 8e-09
TC12829 54 1e-07
TC12836 GB|CAA71302.1|2292921|LJPANC pantoate--beta-alanine liga... 39 0.006
AV769427 32 0.78
CN825238 31 1.0
TC15735 similar to UP|Q9SI52 (Q9SI52) Expressed protein (At2g038... 31 1.3
TC8694 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation ... 30 1.7
BG662411 29 3.9
TC11037 weakly similar to GB|AAP12885.1|30017303|BT006236 At3g12... 29 5.0
TC13616 homologue to UP|Q93YZ7 (Q93YZ7) At2g31810/F20M17.15, par... 28 6.6
BP056369 28 6.6
TC8052 similar to GB|AAP13431.1|30023796|BT006323 At5g02530 {Ara... 28 6.6
TC16935 28 8.6
TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), pa... 28 8.6
>AV780705
Length = 524
Score = 117 bits (293), Expect = 1e-26
Identities = 54/145 (37%), Positives = 88/145 (60%)
Frame = -2
Query: 578 GKYLGLPSMIGRSKKATFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSL 637
G YLGLP++ GR+K + +I+++V +K+ W L++AG+EVLIK ++Q+IP+Y M++
Sbjct: 490 GHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTI 311
Query: 638 FTLPLSLCDEIEKMMNSFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAML 697
P + C+ + ++ FWW G K + K+ GG+ F++L T NLA L
Sbjct: 310 VHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVGFRDLRTQNLAFL 131
Query: 698 GKQGWRILTQSDTLIARIYKARYFP 722
+Q WR+LT + L R+ K+ YFP
Sbjct: 130 ARQAWRVLTNPEALWVRVMKSLYFP 56
Score = 44.3 bits (103), Expect = 1e-04
Identities = 22/77 (28%), Positives = 34/77 (43%)
Frame = -1
Query: 660 SGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIARIYKAR 719
SG +GIHW SWDK+++ GG + L + + L+ ++
Sbjct: 245 SGGRSRGIHWRSWDKMTLE*GKGGRGLQGLENSEPCLPS*ASLACANKPGGLVGTCHEIS 66
Query: 720 YFPRCNFFESELGHNPS 736
FP +F + LG NPS
Sbjct: 65 LFPYPSFMFAALGRNPS 15
>TC18710
Length = 843
Score = 111 bits (277), Expect = 8e-25
Identities = 59/141 (41%), Positives = 79/141 (55%)
Frame = +2
Query: 354 RLKVVLDKCISEFQSAFVPGRSIFDNVMAAIEIIHHMKIKVKGNVGEVALKLDISKAYDR 413
RLK + IS QS F+ GR I DN++ E H + +KLD++KAYDR
Sbjct: 419 RLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGALGRNHSIIKLDMNKAYDR 598
Query: 414 IEWNYLRQVMDKMGFSEQWIKWIMSCVETVDYFVLVNGNVTGPIIPGRGLRQGDPLSPYL 473
+EW +L + GFS W+K IM V V Y +NG V ++P RGLRQGDP SPYL
Sbjct: 599 VEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPKLLPQRGLRQGDPFSPYL 778
Query: 474 FIICAEGLSALIRKAEARGDI 494
F+ E LS LI+ + G++
Sbjct: 779 FLFTMEVLSLLIQNSFNMGNL 841
>BP060613
Length = 378
Score = 89.4 bits (220), Expect = 3e-18
Identities = 40/108 (37%), Positives = 61/108 (56%)
Frame = +1
Query: 656 WWGHSGSNKKGIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIARI 715
WW G+ +G+HW WD L+ K +GG+ FK+ N A+L KQ WRIL D L +I
Sbjct: 46 WWSSKGT--RGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQI 219
Query: 716 YKARYFPRCNFFESELGHNPSFVWRSICKSKFILKAGSRWKIGDGTSI 763
KA YFP +F ++ S+VW S+ + +L +W++G G ++
Sbjct: 220 LKALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETV 363
>AV767121
Length = 525
Score = 85.5 bits (210), Expect = 5e-17
Identities = 53/171 (30%), Positives = 87/171 (49%), Gaps = 5/171 (2%)
Frame = +2
Query: 606 INSWSSKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMNSFWWGHSGSNKK 665
++ W K +S GR LI+ VL ++P +F+S F LP+ + ++M +F WG S N+
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGS-ENEN 178
Query: 666 GIHWMSWDKLSMHKKDGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIARIYKAR---YFP 722
I + W + K+ GG+ K+L TFN A+LGK WR LT+ D+L R+ +A+ Y
Sbjct: 179 KIA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQPDHYSC 358
Query: 723 RCNFFESELGHNPSFV--WRSICKSKFILKAGSRWKIGDGTSISVWNNYWM 771
+++ L P W S +G + +G+G W+ W+
Sbjct: 359 GSSWWNDILSLCPEDADGWFS---------SGLKKLVGEGDQTKFWSEDWL 484
>AV780221
Length = 461
Score = 69.3 bits (168), Expect = 3e-12
Identities = 44/158 (27%), Positives = 73/158 (45%), Gaps = 8/158 (5%)
Frame = +3
Query: 622 LIKFVLQSIPTYFMSLFTLPLS-LCDEIEKMMNSFWWGHSGSNKKGIHWMSWDKLSMHKK 680
LI+ VL ++P + + F LP + + F+ G K I W+ W + K
Sbjct: 9 LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFF-GREVEGGKKIAWVKWSTVCRPKD 185
Query: 681 DGGMSFKNLGTFNLAMLGKQGWRILTQSDTLIARIYKARYFPRCNFFESELGHNPSFVWR 740
+GG+ +NLG FN A+LGK WR+L + D L ++ +Y ++ + + S W
Sbjct: 186 EGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY-------KNAIPQSASSWWN 344
Query: 741 SICKSKFILKAGSRW-------KIGDGTSISVWNNYWM 771
+ + F G W +IG+GT + WN W+
Sbjct: 345 DLHSTCF-EDGGGGWMQRGLCRRIGEGTEVKFWNENWL 455
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 62.8 bits (151), Expect = 3e-10
Identities = 43/131 (32%), Positives = 62/131 (46%)
Frame = -3
Query: 500 CNNAPIISHLLFADDCFLFFRANLNKAQKMRNILSVYEKASGQAVNLQKSEFFCSRNVSP 559
C N I SHL FAD+ +F L + N+L +++ SG N KSE F V
Sbjct: 388 CQNEEI-SHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVFIL--VKE 218
Query: 560 ADHKNIANILGVKTVLGTGKYLGLPSMIGRSKKATFNFIKDRVWKKINSWSSKCLSKAGR 619
I N+LG K + LG+P + + K + + DR K+ W+ + LS AGR
Sbjct: 217 TTKNQITNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGR 38
Query: 620 EVLIKFVLQSI 630
LI +L S+
Sbjct: 37 LQLINSILFSM 5
>BP085058
Length = 452
Score = 58.2 bits (139), Expect = 8e-09
Identities = 37/109 (33%), Positives = 52/109 (46%)
Frame = +2
Query: 578 GKYLGLPSMIGRSKKATFNFIKDRVWKKINSWSSKCLSKAGREVLIKFVLQSIPTYFMSL 637
GKY+ P G K F F DRV ++ + L+K R L K VL +I Y M L
Sbjct: 131 GKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNKPARLTLAKPVLSAISMYVMQL 310
Query: 638 FTLPLSLCDEIEKMMNSFWWGHSGSNKKGIHWMSWDKLSMHKKDGGMSF 686
LP S+CD+I ++ F W N GI ++W+ + K G+ F
Sbjct: 311 NWLPQSICDQICTVVRHFVW----ENVNGIPLVAWETIQSRKSMVGLIF 445
>TC12829
Length = 448
Score = 54.3 bits (129), Expect = 1e-07
Identities = 26/45 (57%), Positives = 33/45 (72%)
Frame = +3
Query: 612 KCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMNSFW 656
K L +AGREVLIK V ++IPTY MS F LP S+C +IE M+ F+
Sbjct: 255 KFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFY 389
Score = 30.0 bits (66), Expect = 2.3
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 611 SKCLSKAGREVLIKFVLQSIPTYFMSLFTLPLSLCDEIEKMMNSFWWGHSGSNKKGIHWM 670
+ C+ + G+ L + + QS T ++L L L + ++ + SF W S ++ IHW+
Sbjct: 256 NSCIEREGKF*LSR*LKQSQLTSCLALLFLILFVL-RLKAWLVSFIWSGDVS-RRSIHWL 429
Query: 671 SWDKL 675
W KL
Sbjct: 430 GWKKL 444
>TC12836 GB|CAA71302.1|2292921|LJPANC pantoate--beta-alanine ligase {Lotus
corniculatus var. japonicus;} , complete
Length = 1310
Score = 38.5 bits (88), Expect = 0.006
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 509 LLFADDCFLFFRANLNKAQKMRNILSVYEKASGQAVNLQKSE 550
LLF D +F RA + K+R IL +Y+ A G +NL KSE
Sbjct: 1102 LLFVGDGIIFCRATTPEENKIREILLMYQSAPGLLINLDKSE 1227
>AV769427
Length = 492
Score = 31.6 bits (70), Expect = 0.78
Identities = 21/78 (26%), Positives = 37/78 (46%)
Frame = -2
Query: 197 TKLFPWWTEMMFV*QMKSNYVQWLKIILLIFFYRKRVTQQLSLKLSVHPSQWRIMFYLKH 256
T LFP W E+ ++ Q + + LL + +R + +S+++ QWR ++ K
Sbjct: 338 TPLFPRWPEIYWLFQFQ--------VFLLTLYLTQRAKRWISIEVPCAQRQWRPLYVPKT 183
Query: 257 LLLLKNLKL*FSL*SQTS 274
++ LKL L* S
Sbjct: 182 GCSMEQLKLLMPL*KWNS 129
>CN825238
Length = 692
Score = 31.2 bits (69), Expect = 1.0
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 769 YW-MRNDVTIFPLDDVATTLANLRVSDCIMPNQKSWNIPLLNSIFTEQIVEHIVSTPL 825
YW M N + IF + + N + ++PN + WN+ L++ +F ++ I S PL
Sbjct: 225 YWRMSNII*IFHAVQITYLIPNAIL---LIPNARRWNVQLIDQLFPKETAAVIKSIPL 389
>TC15735 similar to UP|Q9SI52 (Q9SI52) Expressed protein (At2g03890/T18C20.9),
partial (22%)
Length = 1187
Score = 30.8 bits (68), Expect = 1.3
Identities = 25/93 (26%), Positives = 44/93 (46%), Gaps = 18/93 (19%)
Frame = +1
Query: 1039 GSSAILMR--LFLRRLIWLA*GCALEMRTVILYLLKRITSVLLV---------------- 1080
GSSA++ R + LR +W C L+ R +L L + S L+
Sbjct: 196 GSSAVVRRNPVNLRLFVWRQGSCCLKGRNYLLALRWEMMSSYLI*TMKMLDHISLQRWQL 375
Query: 1081 KSI*EKRLVCYLLWIGCICCNWEQWTSRWMQRE 1113
++*+K+L+C L +G + ++ W R ++RE
Sbjct: 376 MNL*QKQLLCLLWAMGMLATHFPNW-MRALRRE 471
>TC8694 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation
factor 3 subunit 8 (eIF3 p110) (eIF3c), partial (23%)
Length = 986
Score = 30.4 bits (67), Expect = 1.7
Identities = 10/17 (58%), Positives = 12/17 (69%), Gaps = 1/17 (5%)
Frame = +1
Query: 1094 WIG-CICCNWEQWTSRW 1109
W G C CC+W +W SRW
Sbjct: 460 WPGLCCCCSWWRWWSRW 510
>BG662411
Length = 503
Score = 29.3 bits (64), Expect = 3.9
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 618 GREVLIKFVLQSIP-TYFMSLFTLPLSLCDEIEKMMNSFWWGHSGS 662
G ++LI F L S+ + + LFT +LC EK + F+WG SG+
Sbjct: 251 GSKLLILFSLSSVV*SICIKLFTFYYNLC*RDEK-IRKFYWGGSGT 385
>TC11037 weakly similar to GB|AAP12885.1|30017303|BT006236 At3g12920
{Arabidopsis thaliana;}, partial (27%)
Length = 730
Score = 28.9 bits (63), Expect = 5.0
Identities = 17/55 (30%), Positives = 26/55 (46%)
Frame = -3
Query: 627 LQSIPTYFMSLFTLPLSLCDEIEKMMNSFWWGHSGSNKKGIHWMSWDKLSMHKKD 681
L + P F S L S+C E+ M+S+WW WM W ++S +K+
Sbjct: 527 LLTCPFRFSSNSILTFSMCCEMRLSMSSWWW-----------WM-WREISSPRKE 399
>TC13616 homologue to UP|Q93YZ7 (Q93YZ7) At2g31810/F20M17.15, partial (9%)
Length = 440
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/42 (35%), Positives = 20/42 (46%), Gaps = 10/42 (23%)
Frame = -2
Query: 1085 EKRLVCYLL--WIGCICCNWEQWTSR--------WMQREWLI 1116
E+RL L W G +CC + W S W+ REWL+
Sbjct: 280 ERRLCLRWLRRW*G*VCCGGKWWESEVLR*GTVVWLGREWLV 155
>BP056369
Length = 538
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 629 SIPTYFMSLFTLPLSLCDEIEKMMNSFWWGHSGSNKKGIH 668
S+ + S FTLP S D++ + + HS KKGIH
Sbjct: 143 SMASLXSSPFTLPSSKLDQLSSLTQKHLFLHSFLPKKGIH 262
>TC8052 similar to GB|AAP13431.1|30023796|BT006323 At5g02530 {Arabidopsis
thaliana;}, partial (55%)
Length = 1389
Score = 28.5 bits (62), Expect = 6.6
Identities = 7/18 (38%), Positives = 9/18 (49%)
Frame = +1
Query: 1097 CICCNWEQWTSRWMQREW 1114
C CC W W +W +W
Sbjct: 655 CTCCKWSFWKFKWCS*KW 708
>TC16935
Length = 610
Score = 28.1 bits (61), Expect = 8.6
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 216 YVQWLKIILLIFFYRKRVTQQLSLKLSVHPSQWRIMFYLKHLLLLKNLKL 265
++ W+ ++ + + + + LS L++ PS FY+ HL+ ++NL L
Sbjct: 464 FLVWISLLFIF*LFVQTMRCSLSYLLTISPS----CFYVNHLIEIRNLIL 601
>TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), partial (32%)
Length = 1418
Score = 28.1 bits (61), Expect = 8.6
Identities = 12/37 (32%), Positives = 19/37 (50%)
Frame = -2
Query: 643 SLCDEIEKMMNSFWWGHSGSNKKGIHWMSWDKLSMHK 679
SLC + + W SGS K + + +W++ S HK
Sbjct: 982 SLCSTTTESASLSWLDDSGSALKTLRFAAWNQASAHK 872
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.342 0.150 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,210,276
Number of Sequences: 28460
Number of extensions: 329845
Number of successful extensions: 2810
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 2769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2801
length of query: 1189
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1089
effective length of database: 2,051,600
effective search space: 2234192400
effective search space used: 2234192400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 61 (28.1 bits)
Medicago: description of AC138131.4