BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138130.21 - phase: 0 /pseudo
(247 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG662072 176 3e-55
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 30 0.50
TC17191 homologue to UP|Q9SL38 (Q9SL38) At2g18090 protein, parti... 29 0.86
TC15322 weakly similar to UP|Q9LG23 (Q9LG23) F14J16.14 (At1g5589... 28 1.1
AV775170 28 1.5
CN825654 28 1.9
TC19014 similar to GB|BAB10391.1|10177085|AB006701 dipeptidyl pe... 28 1.9
TC8096 weakly similar to GB|AAF89661.1|9622185|AF168782 acinusL ... 27 2.5
BP043500 27 3.3
BP051017 27 3.3
AW719879 27 4.3
TC13476 27 4.3
AV426492 26 5.6
AV413745 26 5.6
TC16116 weakly similar to UP|O80798 (O80798) T8F5.4 protein (Exp... 26 5.6
AU252153 26 7.3
AV422106 26 7.3
BP032526 26 7.3
TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich ... 26 7.3
TC9979 similar to UP|HIR5_MOUSE (Q9QZ23) HIRA-interacting protei... 26 7.3
>BG662072
Length = 411
Score = 176 bits (447), Expect(2) = 3e-55
Identities = 89/108 (82%), Positives = 94/108 (86%), Gaps = 1/108 (0%)
Frame = +1
Query: 65 RSDFSPESGILDYQMSPETKSDHKTPIQTPNREFSTPAKGKSEASTSYALRGVQQNQQGS 124
RSD SPESGILDYQ+SPE KSD +TP QT NREFSTP KGKSEASTSYALRG+QQNQQ S
Sbjct: 13 RSDLSPESGILDYQLSPEPKSDPRTPTQTSNREFSTPGKGKSEASTSYALRGLQQNQQSS 192
Query: 125 LSLNWWS-SPAKSGGEQEEKGRGSPVEGVVQPGALITLPPPPEVARPE 171
LNWWS + AKSGGEQ+EKGR SPVEGVVQ GALITLPPP EVARPE
Sbjct: 193 PGLNWWSPATAKSGGEQDEKGRSSPVEGVVQHGALITLPPPLEVARPE 336
Score = 54.7 bits (130), Expect(2) = 3e-55
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +3
Query: 172 VQRNSLPAGNLNEEEWVTVYGFSP 195
VQRNSLPAGNLNEEEWVTVYGFSP
Sbjct: 336 VQRNSLPAGNLNEEEWVTVYGFSP 407
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 29.6 bits (65), Expect = 0.50
Identities = 27/104 (25%), Positives = 42/104 (39%), Gaps = 3/104 (2%)
Frame = -2
Query: 11 SGRQSLFFQDLASPVNARRGKFSSP---GQSGASSSLWRENFGNSDLPPPPFFTLEDRSD 67
SG +SL ++ RR ++S P S +SSS + +S PPPP R
Sbjct: 309 SGSKSLDASSSSAAATVRRTRYSVPKSSSSSSSSSSSSSSSSSSSGSPPPP------RPP 148
Query: 68 FSPESGILDYQMSPETKSDHKTPIQTPNREFSTPAKGKSEASTS 111
+P S S + S P + S+P+ +S+S
Sbjct: 147 STPPS-----SSSSSSSSSSSPPPGASSSSSSSPSSSSPSSSSS 31
>TC17191 homologue to UP|Q9SL38 (Q9SL38) At2g18090 protein, partial (5%)
Length = 598
Score = 28.9 bits (63), Expect = 0.86
Identities = 18/59 (30%), Positives = 32/59 (53%), Gaps = 2/59 (3%)
Frame = -2
Query: 115 RGVQQNQQ--GSLSLNWWSSPAKSGGEQEEKGRGSPVEGVVQPGALITLPPPPEVARPE 171
RG++++++ G + +PA + G ++ RG P +GV + T PPPP +PE
Sbjct: 291 RGLEESKKLDGVSGMAERPAPAVADGVVLKRKRGRPAKGVSK-----TAPPPPPPKQPE 130
>TC15322 weakly similar to UP|Q9LG23 (Q9LG23) F14J16.14
(At1g55890/F14J16_4), partial (33%)
Length = 588
Score = 28.5 bits (62), Expect = 1.1
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -1
Query: 37 QSGASSSLWRENFGNSDLP 55
+SG SS++WR FG DLP
Sbjct: 429 RSGISSNIWRARFGMPDLP 373
>AV775170
Length = 502
Score = 28.1 bits (61), Expect = 1.5
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Frame = -2
Query: 50 GNSDLPPPPFFTLEDRSDFSPESGILDYQMSPETKSDHKTPI-QTPNREFSTPAKGKSEA 108
G + PP + E+RS + +D + S K D TPI +TPN E S + ++
Sbjct: 378 GEASNPPSDHDSAEERSKWGRRE--IDKRRS---KKD-TTPIWRTPNTERSDETEERARV 217
Query: 109 ST---SYALRGVQQNQQGSLSLNWWSSPAKSGGEQEEKGRGSPVEGVVQPGALITLPPP 164
S+ ++ G + G + + G+Q EKGRGSP Q G P P
Sbjct: 216 SSPPRTHRHTGEHRRLAGRRR-----TIERKKGKQREKGRGSPPP---QGGGAAATPSP 64
>CN825654
Length = 580
Score = 27.7 bits (60), Expect = 1.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 22 ASPVNARRGKFSSPGQSGASSSLWRENFGNSDLPPPPFF 60
+SPVN+ FSS S + S + + LPPPPFF
Sbjct: 117 SSPVNS---DFSSSSSSSSPSPSKPKLDAENTLPPPPFF 10
>TC19014 similar to GB|BAB10391.1|10177085|AB006701 dipeptidyl peptidase
IV-like protein {Arabidopsis thaliana;} , partial (16%)
Length = 680
Score = 27.7 bits (60), Expect = 1.9
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +3
Query: 56 PPPFFTLEDRSDFSPESGILDYQMSPETKSDHKT---PIQTPNRE--FSTPAKGKSEAST 110
P P + +FSP+ ++ Y SPE + K ++T +E FS P G E++
Sbjct: 360 PLPGYVSPSSINFSPDDSLISYLYSPEQTLNRKVFAFNVKTKAQELLFSPPDGGLDESNI 539
Query: 111 S 111
S
Sbjct: 540 S 542
>TC8096 weakly similar to GB|AAF89661.1|9622185|AF168782 acinusL protein
{Mus musculus;} , partial (3%)
Length = 1044
Score = 27.3 bits (59), Expect = 2.5
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Frame = +1
Query: 132 SPAKSGGEQEEKGRGSPVEGVVQPGALITLPPPPEVAR-PEVQRNSLPA 179
+PA S + E SP + Q + LPPPP ++R P V R LP+
Sbjct: 76 APAPSSSQPEP----SPRQQREQHPIPVALPPPPPLSRAPPVARERLPS 210
>BP043500
Length = 577
Score = 26.9 bits (58), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 123 GSLSLNWWSSPAKSGGEQEEKGRGSPVE 150
GS+S+ WW S + S ++++ R PVE
Sbjct: 385 GSISVTWWRSASASSLLKQKRPRFLPVE 302
>BP051017
Length = 522
Score = 26.9 bits (58), Expect = 3.3
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +2
Query: 39 GASSSLWRENFGNSDLPPPPFFTLEDRSDFSP 70
G ++LW NF + + FFTL++ S F+P
Sbjct: 377 GVGTALWSLNFSITAILSQIFFTLKEPSYFTP 472
>AW719879
Length = 470
Score = 26.6 bits (57), Expect = 4.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 155 PGALITLPPPPEVARPEVQRNSLPAGNLNE 184
PG + P P + PE+ +SLP G+L +
Sbjct: 224 PGRTFGIFPAPVTSPPEIPPSSLPGGSLKK 313
>TC13476
Length = 501
Score = 26.6 bits (57), Expect = 4.3
Identities = 17/58 (29%), Positives = 25/58 (42%), Gaps = 8/58 (13%)
Frame = +1
Query: 49 FGNSDLPPPP--------FFTLEDRSDFSPESGILDYQMSPETKSDHKTPIQTPNREF 98
F + + PPPP ++ R +SP + S K+ H T +Q NREF
Sbjct: 235 FSDHNYPPPPPARNAAAIVASVRGRLRYSPSD---HHPSSTYAKARHSTDLQIANREF 399
>AV426492
Length = 431
Score = 26.2 bits (56), Expect = 5.6
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = -1
Query: 131 SSPAKSGGEQEEKGRGSPVEGVVQPGA-----LITLPPPPEVARPEVQRN 175
SS +K G ++ GRG+ G+V GA L LP P RP RN
Sbjct: 215 SSASKCRGRPKKTGRGTRATGLVGRGAVRDQGLTPLPSRPR-GRPRKVRN 69
>AV413745
Length = 405
Score = 26.2 bits (56), Expect = 5.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 156 GALITLPPPPEVARPEVQRNSLPAGNLNEEEWVTVY 191
G ++PPPPE + PEV + G++N E + ++
Sbjct: 247 GLAPSIPPPPESSEPEV---AADPGHINLFEGIKIF 345
>TC16116 weakly similar to UP|O80798 (O80798) T8F5.4 protein (Expressed
protein) (At1g65270), partial (34%)
Length = 677
Score = 26.2 bits (56), Expect = 5.6
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +2
Query: 143 KGRGSPVEGVVQPGALITLPPPPEVAR-----PEVQRNS 176
K S V+ P ++ LPPPP + R P + R+S
Sbjct: 185 KNSASKVDAHPSPNPVLHLPPPPPIGRDFPTPPPIPRSS 301
>AU252153
Length = 350
Score = 25.8 bits (55), Expect = 7.3
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 132 SPAKSGGEQEEKGRGSP 148
SP K GGEQEE G P
Sbjct: 18 SPEKIGGEQEEDGGSQP 68
>AV422106
Length = 461
Score = 25.8 bits (55), Expect = 7.3
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +2
Query: 102 AKGKSEASTSYALRGVQQNQQGSLSLNWWSSPAKSGGEQEEKGRGSPVEGV 152
++G S+ S+S+ +Q+ + +L + ++SP K+GG+ P+E +
Sbjct: 254 SEGSSKQSSSHEEFDLQECLEHNLPDSPFASPTKAGGDFVAPFSNGPIEAI 406
>BP032526
Length = 516
Score = 25.8 bits (55), Expect = 7.3
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 131 SSPAKSGGEQEEKGRGSPVEGVVQPGALITLPPPPEVAR 169
SS A GEQ GS V +PG T PP +R
Sbjct: 393 SSRASDPGEQPPHAAGSEQRTVTRPGKRRTSPPAASRSR 509
>TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich RNA binding
protein 7 {Arabidopsis thaliana;} , partial (19%)
Length = 483
Score = 25.8 bits (55), Expect = 7.3
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +2
Query: 22 ASPVNARRGKFSSPGQSGASSSLWRENFGNSDLPPPPFFTLEDRSD-----FSPESGILD 76
A+ VN SSP + AS SL ++ PPPP E S SP S
Sbjct: 56 ATAVNPTSASRSSPTTAPASLSLSPPPQPSNPPPPPPLPPPEMPSSPATLKSSPSSATA- 232
Query: 77 YQMSPETKSDHKTPIQTPNREFSTPA 102
+P TKS P + + STPA
Sbjct: 233 -TAAPSTKSTTSPPPPSTL*KSSTPA 307
>TC9979 similar to UP|HIR5_MOUSE (Q9QZ23) HIRA-interacting protein 5
(mHIRIP5), partial (36%)
Length = 1304
Score = 25.8 bits (55), Expect = 7.3
Identities = 24/65 (36%), Positives = 28/65 (42%), Gaps = 2/65 (3%)
Frame = +3
Query: 52 SDLPPPPFFTLEDRSDFSPESGILDYQMSPETKSDHKTPIQTPNREFSTPAK--GKSEAS 109
S LPPPP F SD P+ G E S ++ +QTP T A K EA
Sbjct: 138 SPLPPPPLFHF---SDSPPDKG--------EPCSSKRSRLQTPCLSCFTLASLLWKLEAP 284
Query: 110 TSYAL 114
TS L
Sbjct: 285 TSPTL 299
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,620,219
Number of Sequences: 28460
Number of extensions: 71871
Number of successful extensions: 403
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of query: 247
length of database: 4,897,600
effective HSP length: 88
effective length of query: 159
effective length of database: 2,393,120
effective search space: 380506080
effective search space used: 380506080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC138130.21