TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138130.15 + phase: 0 
         (174 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AI967457                                                               40  3e-04
AV415475                                                               30  0.23
BP035448                                                               30  0.30
BP037956                                                               27  1.5
AV769205                                                               27  2.5
TC16400 similar to UP|O48783 (O48783) At2g26680 protein, partial...    27  2.5
TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein,...    26  3.3
AV411945                                                               26  4.3
TC9688                                                                 25  5.6
TC9035 similar to UP|Q9FLZ8 (Q9FLZ8) Emb|CAB87751.1 (AT5g39360/M...    25  5.6
TC16701 homologue to UP|Q9LSR2 (Q9LSR2) Genomic DNA, chromosome ...    25  5.6
BP053310                                                               25  7.3
AV776018                                                               25  7.3
TC14269 weakly similar to UP|Q13484 (Q13484) Ankyrin G119, parti...    25  7.3
AU089476                                                               25  7.3
TC13038                                                                25  7.3
BP042422                                                               25  9.6
AI967607                                                               25  9.6
BP041664                                                               25  9.6

>AI967457 
          Length = 278

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 21/44 (47%), Positives = 26/44 (58%)
 Frame = +3

Query: 107 AFFVACSHGHLDLVNLLLNLSEIVEPGLAGFDQACFHIAASRGH 150
           A F A   GHLD+V  LL  S + +   +GFD    HIAAS+GH
Sbjct: 3   ALFTAAERGHLDVVKELLKHSNLKKKNRSGFDP--LHIAASQGH 128


>AV415475 
          Length = 427

 Score = 30.0 bits (66), Expect = 0.23
 Identities = 20/62 (32%), Positives = 33/62 (52%)
 Frame = +2

Query: 28  LNQRTDDTFNTPLHLASKYGCIEMVSEIVRLCPDMVSAENENMETPIHEACRQENVKVLM 87
           L + TD    TPLH+AS +G + +   +V    D V+A++    TP+ +A   +   V+ 
Sbjct: 158 LVKATDYDKRTPLHVASLHGWLAVAKCLVEFGAD-VNAQDRWKNTPLADAEGAKRTAVIE 334

Query: 88  LL 89
           LL
Sbjct: 335 LL 340


>BP035448 
          Length = 509

 Score = 29.6 bits (65), Expect = 0.30
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = -1

Query: 23  VREGILNQRTDDTFNTPLHLASKYGCIEMVSEIVRLCPD------MVSAENENMETPIHE 76
           ++ G   +  D+    PLH A   G  ++V  I+           M+ + +   +TP+H 
Sbjct: 491 IQRGANLEAQDEDGAIPLHDACAGGFTQIVQLILHSANGTEHIKRMLESIDSEGDTPLHH 312

Query: 77  ACRQENVKVLMLLLEVNPTAACKLN 101
           A R E+  V+ LLL  N  +  K N
Sbjct: 311 AARGEHADVIRLLLS-NGASTTKTN 240


>BP037956 
          Length = 476

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 38  TPLHLASKYGCIEMVSEIVRLCPDMVSAENENMETPIHEACRQENVKVLMLLLEVN 93
           TPLHLA   G + ++ + V  C           ET  H A R       + L++V+
Sbjct: 162 TPLHLAVMNGKVSILEDFVSSCAASFHYLTREEETIFHLAVRYGCYDAFVFLVQVS 329


>AV769205 
          Length = 600

 Score = 26.6 bits (57), Expect = 2.5
 Identities = 14/36 (38%), Positives = 20/36 (54%)
 Frame = +1

Query: 86  LMLLLEVNPTAACKLNPTCKSAFFVACSHGHLDLVN 121
           L+LLL + PTA+        S+   A SH H +LV+
Sbjct: 190 LLLLLPMRPTASHATTVASASSTRAASSHHHCELVS 297


>TC16400 similar to UP|O48783 (O48783) At2g26680 protein, partial (58%)
          Length = 1053

 Score = 26.6 bits (57), Expect = 2.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 96  AACKLNPTCKSAFFVACSHGHLDLVNLLLNLSEI 129
           A+C L   C     + CSH HL  ++L+ + SEI
Sbjct: 808 ASC*LCHVCSCQPVLICSHQHL*SIHLIFHHSEI 707


>TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein, complete
          Length = 1268

 Score = 26.2 bits (56), Expect = 3.3
 Identities = 13/23 (56%), Positives = 15/23 (64%)
 Frame = +2

Query: 150  HTGENKEFSLLCLHVFLTLLSTL 172
            H  E + FS+LCLH FLT  S L
Sbjct: 1187 HVKELELFSILCLHRFLTS*SIL 1255


>AV411945 
          Length = 405

 Score = 25.8 bits (55), Expect = 4.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = -2

Query: 86  LMLLLEVNPTAACKLNPTCKSAFF----VACSHGHLD---LVNLLLNLSEIVEP 132
           L+L  ++  +  CKL+P C    F    +A    H D   L+NLLL L +++ P
Sbjct: 365 LLLKSKIMSSFLCKLSPQCLKLMFHIHDLAWLMQHFDSSSLLNLLL*LFQVLLP 204


>TC9688 
          Length = 715

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 48  CIEMVSEIVRLCPDMVSAENENMETPIHEACRQEN 82
           C+EM S++  L  D  S E  + ETP +E  + E+
Sbjct: 205 CLEMKSQLFNLEVDSGSIEILDHETPENEIAKSES 309


>TC9035 similar to UP|Q9FLZ8 (Q9FLZ8) Emb|CAB87751.1 (AT5g39360/MUL8_40),
           partial (34%)
          Length = 593

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 20/77 (25%), Positives = 32/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 76  EACRQENVKVLMLLLE--VNPTAACKLNPTCKSAFFVACSHGHLDLVNLLLNLSEIVEPG 133
           E C     K+  +LL   +  +A+C+L    +   +  C +GH+  +  LL LS+  E  
Sbjct: 75  EVCPYCKAKLWSMLLANMIPKSASCRLGSYEECVEYYVCLNGHMLGICTLLPLSDSEEAS 254

Query: 134 LAGFDQACFHIAASRGH 150
               D   F I     H
Sbjct: 255 EKE*DIHNFQIGIQSSH 305


>TC16701 homologue to UP|Q9LSR2 (Q9LSR2) Genomic DNA, chromosome 5, BAC
           clone:F24B18, partial (24%)
          Length = 691

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 22/64 (34%), Positives = 27/64 (41%), Gaps = 2/64 (3%)
 Frame = -2

Query: 11  NNDISTFSSIVKVREGILNQRTDDTFNTPLHLASKYGCIEMVSEIVRLCPDMVSAENE-- 68
           NN IS  S I  +R    N R D   NT +  ASK              P   SAE++  
Sbjct: 213 NNSISNNSIIPVLRIANNNNRADTVVNTVIADASKLPVATTADGAKPAAPHDDSAESKTL 34

Query: 69  NMET 72
           N+ET
Sbjct: 33  NLET 22


>BP053310 
          Length = 473

 Score = 25.0 bits (53), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 114 HGHLDLVNLLLNLSEIVEPGL 134
           H H +   L L + EI+EPGL
Sbjct: 173 HSHTNFNKLCLVIKEIIEPGL 235


>AV776018 
          Length = 476

 Score = 25.0 bits (53), Expect = 7.3
 Identities = 21/68 (30%), Positives = 32/68 (46%), Gaps = 12/68 (17%)
 Frame = -1

Query: 119 LVNL-----LLNLSEIVEPGL-------AGFDQACFHIAASRGHTGENKEFSLLCLHVFL 166
           L+NL     LL  SE+ EP +       A  ++ C + AAS     + + F+ L    +L
Sbjct: 407 LINLSRSKSLLEQSELEEPSISVV*AFGASEEEFCSYEAASDLKLSDFRRFNSLETFSWL 228

Query: 167 TLLSTLPF 174
             LS+ PF
Sbjct: 227 LFLSSFPF 204


>TC14269 weakly similar to UP|Q13484 (Q13484) Ankyrin G119, partial (3%)
          Length = 656

 Score = 25.0 bits (53), Expect = 7.3
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 38  TPLHLASKYGCIEMVSEIVRLCPDM-VSAENENMETPIHEACRQENVKVLMLLLE 91
           TPLHLA++ G + ++ E++    ++    +     TP+H A ++     +  L+E
Sbjct: 76  TPLHLAAEGGHLGVMDELLERGANIDARTKGACGWTPLHIAAKERRKDAVKFLIE 240


>AU089476 
          Length = 548

 Score = 25.0 bits (53), Expect = 7.3
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
 Frame = +1

Query: 153 ENKEFSLL----CLHVFLTLLSTLPF 174
           EN  +S+     CL VFL L  TLPF
Sbjct: 253 ENNNYSMSDTIPCLFVFLRLCETLPF 330


>TC13038 
          Length = 419

 Score = 25.0 bits (53), Expect = 7.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 35  TFNTPLHLASKYGCIEMVSEIVRLCPDMVSA 65
           T+NT L   SKYG +  V + + +  DM  A
Sbjct: 99  TYNTLLKARSKYGSVLEVQQCLAIYQDMQKA 191


>BP042422 
          Length = 526

 Score = 24.6 bits (52), Expect = 9.6
 Identities = 19/69 (27%), Positives = 30/69 (42%)
 Frame = -2

Query: 98  CKLNPTCKSAFFVACSHGHLDLVNLLLNLSEIVEPGLAGFDQACFHIAASRGHTGENKEF 157
           CK+ P+    F +A  H HL                L  +D+AC H   ++  +  N++ 
Sbjct: 363 CKVCPSHH*PFELAFHHQHL-------------RNHLYYYDKACSHRVEAKR*SFPNRDT 223

Query: 158 SLLCLHVFL 166
             L LH+FL
Sbjct: 222 CPLPLHLFL 196


>AI967607 
          Length = 378

 Score = 24.6 bits (52), Expect = 9.6
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +1

Query: 37  NTPLHLASKYGCIEMVSEIVRLCPDMVSAENENMETPIHEACRQENVKVLMLLLEVNPTA 96
           +TPLHLA++ G ++ + E++    D +  +      P   A + ++    + LL  NP +
Sbjct: 142 STPLHLAARGGSLDCIRELLAWGADRLQRDASG-RIPYMVALKHKHGAACVSLL--NPAS 312

Query: 97  A 97
           A
Sbjct: 313 A 315


>BP041664 
          Length = 487

 Score = 24.6 bits (52), Expect = 9.6
 Identities = 12/29 (41%), Positives = 18/29 (61%)
 Frame = -3

Query: 68  ENMETPIHEACRQENVKVLMLLLEVNPTA 96
           E+ME  + E   +  + VL+LLL  NP+A
Sbjct: 206 EDMEGAVDEGRGRVEIVVLLLLLHRNPSA 120


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,278,739
Number of Sequences: 28460
Number of extensions: 48051
Number of successful extensions: 240
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of query: 174
length of database: 4,897,600
effective HSP length: 84
effective length of query: 90
effective length of database: 2,506,960
effective search space: 225626400
effective search space used: 225626400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)