BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138087.2 + phase: 0 /pseudo
(296 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19476 similar to UP|Q9LH54 (Q9LH54) Emb|CAB88266.1, partial (15%) 42 2e-04
BP049985 31 5e-04
BP056028 37 0.004
BP055249 37 0.004
TC12790 similar to PIR|H96696|H96696 protein F1N21.16 [imported]... 33 0.044
AV776382 33 0.075
BP078507 32 0.098
BP055972 32 0.13
BI418387 31 0.22
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%) 31 0.29
TC16618 30 0.37
TC8330 weakly similar to GB|AAM61257.1|21536925|AY084696 calmodu... 30 0.49
TC10758 30 0.64
BI420778 29 0.83
AV770031 29 1.1
AV409919 28 1.4
AV422714 28 1.4
TC9284 weakly similar to UP|Q9LPY0 (Q9LPY0) T23J18.22, partial (... 28 1.4
TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase is... 28 1.9
>TC19476 similar to UP|Q9LH54 (Q9LH54) Emb|CAB88266.1, partial (15%)
Length = 545
Score = 41.6 bits (96), Expect = 2e-04
Identities = 16/27 (59%), Positives = 24/27 (88%)
Frame = +2
Query: 269 KWKGFSLQVIQILWSLRKQSRC*KLLN 295
+W+GF +V+QILWSLR+QS+C*K ++
Sbjct: 83 RWRGFLQRVLQILWSLRRQSKC*KSMS 163
>BP049985
Length = 541
Score = 31.2 bits (69), Expect(2) = 5e-04
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = -1
Query: 269 KWKGFSLQVIQILWSLRKQSRC*KLLNE 296
+WK +S+Q+I +L LRK +C*+++++
Sbjct: 451 RWKRYSVQIILMLLKLRKPRKC*RIMSK 368
Score = 27.7 bits (60), Expect(2) = 5e-04
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 250 RKELMPPQDGIGNRVPNGIK 269
RK+L+P Q+GIG + P+ I+
Sbjct: 539 RKDLLPSQNGIGKKAPDDIQ 480
>BP056028
Length = 537
Score = 37.0 bits (84), Expect = 0.004
Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = -1
Query: 160 VWT-RWPEDSHFYEAVITDYNP 180
+W R PED+HFYE ++TDYNP
Sbjct: 435 IWLERCPEDNHFYEDIVTDYNP 370
>BP055249
Length = 495
Score = 37.0 bits (84), Expect = 0.004
Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = -1
Query: 160 VWT-RWPEDSHFYEAVITDYNP 180
+W R PED+HFYE ++TDYNP
Sbjct: 390 IWLERCPEDNHFYEDIVTDYNP 325
>TC12790 similar to PIR|H96696|H96696 protein F1N21.16 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(29%)
Length = 727
Score = 33.5 bits (75), Expect = 0.044
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Frame = -1
Query: 78 TSQPVHDILPSPTVS---------ASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGP 128
TS H LP+PT + A P+ SHS + P VKP Q + P
Sbjct: 277 TSSAPHLALPAPTQTTP*ETNSPDAPPAPPRRSHS------STAPSSRRVKPTQAPAGSP 116
Query: 129 TGARHFSNHNSSSNLNAPAEEAQ 151
A SSS N P + AQ
Sbjct: 115 ARANAAPPQRSSSRRNRPGDNAQ 47
>AV776382
Length = 462
Score = 32.7 bits (73), Expect = 0.075
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 153 DPLIGKKVWTRWPEDSHFYEAVITDYN 179
D L+G +V WPED FYE ++ ++
Sbjct: 82 DELVGTRVKVWWPEDKEFYEGIVDSFD 162
>BP078507
Length = 414
Score = 32.3 bits (72), Expect = 0.098
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Frame = -1
Query: 81 PVHDILPSPTVSAS---------NKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGA 131
P+H PSP S P TSH PP+L Q S P +S P
Sbjct: 282 PLHSPQPSPNAPTSPYPAPSSQLRPPPSTSHQPPPTLLQPTSDTPSPSPPPPSSPNPPPP 103
Query: 132 RHFSN--HNSSSNLNAP 146
H N H SS+ + P
Sbjct: 102 HHSPNPPHPPSSSPSPP 52
>BP055972
Length = 335
Score = 32.0 bits (71), Expect = 0.13
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2
Query: 163 RWPEDSHFYEAVITDYNP 180
R PED FYE ++TDYNP
Sbjct: 325 RCPEDHPFYEDIVTDYNP 272
>BI418387
Length = 479
Score = 31.2 bits (69), Expect = 0.22
Identities = 24/79 (30%), Positives = 33/79 (41%)
Frame = +2
Query: 68 TGIYQPPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTG 127
T PP T+S P SA K T+ S PP PG +S +P S
Sbjct: 281 TSSLAPPNTTSSSP----------SAPTKPSTTTSSEPP-----FPGPTSPQPSSSRSEN 415
Query: 128 PTGARHFSNHNSSSNLNAP 146
PTGA + +++S + P
Sbjct: 416 PTGAESSAPTSTTSAPSPP 472
>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
Length = 632
Score = 30.8 bits (68), Expect = 0.29
Identities = 20/67 (29%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
Frame = +3
Query: 86 LPSPTVSASNKKPKTSHSVP---PSLGQSLPGLSSVKPVQCASTGPTGARHFSNHNSSSN 142
LP V + +K P++S ++ PSL S+P ++S + + T H S+ +SSS+
Sbjct: 174 LPQQVVPSFSKPPRSSSNLSNRKPSLNISIPSINSGLKSNISQSKETSFSHQSSSSSSSS 353
Query: 143 LNAPAEE 149
+ EE
Sbjct: 354 DHQTQEE 374
>TC16618
Length = 1228
Score = 30.4 bits (67), Expect = 0.37
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = +3
Query: 85 ILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKP------VQCASTGPTGAR 132
+LP P++S K PKT S+ PS P +S P +C S P R
Sbjct: 606 LLPPPSISPKLKSPKTQSSLSPSTNPQQPPPASSPPPNSSARSRCLSISPWRTR 767
>TC8330 weakly similar to GB|AAM61257.1|21536925|AY084696 calmodulin-like
protein {Arabidopsis thaliana;} , partial (72%)
Length = 1174
Score = 30.0 bits (66), Expect = 0.49
Identities = 16/55 (29%), Positives = 21/55 (38%)
Frame = +1
Query: 74 PGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGP 128
P ++ P P PT S P+TS PP+ S P +TGP
Sbjct: 121 PNASSDLPKRTTSPDPTHPLSPPPPRTSPPPPPTTNPSTAAA*GPPPASSQTTGP 285
>TC10758
Length = 532
Score = 29.6 bits (65), Expect = 0.64
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Frame = +2
Query: 61 RTRDWRETGIYQPPGCTTSQPVHDILPSPTVS--ASNKKPKTSHSVPP---SLGQSLPGL 115
RT W PP T PSPT + + N S + PP S SLP
Sbjct: 212 RTNSW---SFSNPPPSVTPTYSTPSAPSPTATPPSENSSSAASPAKPPPRRSAASSLPTA 382
Query: 116 SSVKPVQCASTGPTGARHFSNHNSS 140
+S K + + P G R ++ SS
Sbjct: 383 TSTKRLSSSINPPAGPRVMASSCSS 457
>BI420778
Length = 546
Score = 29.3 bits (64), Expect = 0.83
Identities = 29/94 (30%), Positives = 39/94 (40%), Gaps = 11/94 (11%)
Frame = +3
Query: 86 LPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCAS-----------TGPTGARHF 134
LP P+ S ++ +S PP S P LS + V C+S T P R+F
Sbjct: 39 LPCPSSSTTSTSSSSSSMAPP----SPPLLSRSRAVSCSSNKIPRWDSHAETFP--PRNF 200
Query: 135 SNHNSSSNLNAPAEEAQFDPLIGKKVWTRWPEDS 168
S NS EE +F K+ W W +DS
Sbjct: 201 SRANSQEEEAEDDEEEEFG---NKRRW--WSDDS 287
>AV770031
Length = 521
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/93 (27%), Positives = 37/93 (38%), Gaps = 10/93 (10%)
Frame = -1
Query: 74 PGCTTSQPVHDILPSPTV---------SASNKKPKTSHSVPPSLGQS-LPGLSSVKPVQC 123
PG P ++ SPT+ AS P S P ++G + L G++ +
Sbjct: 356 PGSFVHSPYGPVVVSPTMVPFSGWGPYQASATSPVLPSSSPSNVGSTQLYGITHLPSSAA 177
Query: 124 ASTGPTGARHFSNHNSSSNLNAPAEEAQFDPLI 156
A TGP FS SSS+ E + P I
Sbjct: 176 AYTGPYQPSGFSVGPSSSSQKQSFSERPYPPEI 78
>AV409919
Length = 423
Score = 28.5 bits (62), Expect = 1.4
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +3
Query: 87 PSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGARHFSNHNSSSNLNAP 146
PSP +AS KP+TS PP L S S+ GAR F S++ P
Sbjct: 102 PSPPANAS--KPRTSKLPPPPLPSPTLYFSPSSSPSSTSSSTAGARRFGTPPLSTSSPPP 275
>AV422714
Length = 451
Score = 28.5 bits (62), Expect = 1.4
Identities = 22/64 (34%), Positives = 27/64 (41%), Gaps = 3/64 (4%)
Frame = +2
Query: 73 PPGCTTSQPVHDILPSPTV---SASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPT 129
PPGC++ + D SPTV S S+ + S PP LG LP A P
Sbjct: 254 PPGCSS*RVS*D--TSPTVRPSSGSSSRLSQQSSPPPGLGPFLPTSPRSTSHSAAPAPPC 427
Query: 130 GARH 133
RH
Sbjct: 428 RRRH 439
>TC9284 weakly similar to UP|Q9LPY0 (Q9LPY0) T23J18.22, partial (33%)
Length = 898
Score = 28.5 bits (62), Expect = 1.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 87 PSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGARHFSNHNSSS 141
P+P SAS KP + S P P SS P+ + + + F+ + SS
Sbjct: 196 PNPASSASTTKPSAATSPPSKPHAPTPSSSSSTPLSSTTNPNSASPSFATSSPSS 360
>TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase isolog,
25331-24357 (At1g11090), partial (18%)
Length = 552
Score = 28.1 bits (61), Expect = 1.9
Identities = 26/82 (31%), Positives = 33/82 (39%), Gaps = 4/82 (4%)
Frame = +3
Query: 73 PPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPV----QCASTGP 128
PP + + LP+ S S P T S PPS S P ++ P + AST P
Sbjct: 105 PPKESATPNPTSTLPTARSSPSPSSPSTPKSKPPS---S*PTATAPTPAGSSRRSASTSP 275
Query: 129 TGARHFSNHNSSSNLNAPAEEA 150
GA S SS+ A A
Sbjct: 276 PGATPSSPPTSSATAAPTASAA 341
Score = 27.7 bits (60), Expect = 2.4
Identities = 17/56 (30%), Positives = 23/56 (40%), Gaps = 1/56 (1%)
Frame = +3
Query: 66 RETGIYQPPGCT-TSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKP 120
R + PPG T +S P +PT SA+ T+ P S S +S P
Sbjct: 252 RRSASTSPPGATPSSPPTSSATAAPTASAATSATSTASPPPRSPSSSTSAAASPTP 419
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.335 0.147 0.499
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,402,070
Number of Sequences: 28460
Number of extensions: 104561
Number of successful extensions: 1215
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of query: 296
length of database: 4,897,600
effective HSP length: 90
effective length of query: 206
effective length of database: 2,336,200
effective search space: 481257200
effective search space used: 481257200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC138087.2