Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138087.1 + phase: 0 
         (1399 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13324                                                               167  8e-42
TC9543                                                                125  6e-29
TC18445                                                                64  1e-10
TC16745 similar to UP|Q94A14 (Q94A14) At2g43170/F14B2.11, partia...    35  0.11
TC8837 similar to UP|Q9LEU7 (Q9LEU7) Serine/threonine protein ki...    34  0.14
TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein...    34  0.18
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar...    34  0.18
BP044109                                                               33  0.40
AV777072                                                               32  0.53
TC8573 similar to UP|Q9SIH5 (Q9SIH5) At2g36090 protein, partial ...    32  0.53
TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, parti...    32  0.90
BI420016                                                               31  1.2
BE122533                                                               31  1.5
TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromos...    31  1.5
BP034485                                                               31  1.5
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi...    31  1.5
TC11671 similar to UP|Q84WI7 (Q84WI7) Expressed protein, partial...    30  2.0
TC9467 weakly similar to UP|Q8WQ86 (Q8WQ86) Microtubule-associat...    30  2.0
TC16495 similar to UP|Q9LUA5 (Q9LUA5) Genomic DNA, chromosome 3,...    30  2.0
TC16098 homologue to UP|Q8LAQ5 (Q8LAQ5) Flower pigmentation prot...    30  2.0

>TC13324 
          Length = 430

 Score =  167 bits (424), Expect = 8e-42
 Identities = 81/142 (57%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
 Frame = +2

Query: 394 NWSGSYGINHQQDLDRHTTDTATKSGGSAYGG-NQQFDHSFGSSNSVNKNQQNASSSFGS 452
           +WSG  G+NHQQ +D +T +T  K       G  QQ +HS+GSS S  K+QQN SSSFGS
Sbjct: 5   SWSGLQGVNHQQGIDMYTAETTAKREDYITSGIYQQVNHSYGSSISETKDQQNTSSSFGS 184

Query: 453 VPLYNKVNHGHGLVNGTVEVQRFAPSGNFGQHYNYSNTQFDEQKNISNDYAESHQPFGYS 512
           V LYNKVNH HG  NGT E + F PSGN GQ +NYS+T+FDEQK  SN++A + +PF YS
Sbjct: 185 VALYNKVNHDHGFANGTFEPKSFVPSGNIGQQFNYSSTKFDEQKKFSNEFAGNQKPFSYS 364

Query: 513 NQSYQSGHQQSYAPNVGRSSAG 534
            QS   G+   YAP+VGRSSAG
Sbjct: 365 YQSSPDGYHSQYAPDVGRSSAG 430


>TC9543 
          Length = 1003

 Score =  125 bits (313), Expect = 6e-29
 Identities = 62/114 (54%), Positives = 78/114 (68%)
 Frame = +3

Query: 1282 AYENPSTSYRNDWSFQSPKHASASTWQRCPSMGNFANHEAVVSGSNSRSPHSRRTVSWGG 1341
            A E+PSTS  NDWS+Q PKH SA   Q+ PSMGN +   A   GSNS   +SRRT SW G
Sbjct: 3    ANEDPSTSSTNDWSYQPPKHVSAVAMQKFPSMGNISKQGAT-GGSNSHFANSRRTASWSG 179

Query: 1342 STDVTYSPTKMREIMPLGEALGMPPSTYMSDDISSMRTSMKSGNFGEDLHEVDL 1395
            + +  +SP  +RE  PLG+ALGMPP T++ +  SSM  +MKS +FGEDL EV+L
Sbjct: 180  NVNDAFSPPTVRETKPLGDALGMPPLTFIPNQSSSMHPTMKSSSFGEDLQEVEL 341


>TC18445 
          Length = 532

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 33/53 (62%), Positives = 37/53 (69%)
 Frame = +1

Query: 1347 YSPTKMREIMPLGEALGMPPSTYMSDDISSMRTSMKSGNFGEDLHEVDLSTHN 1399
            Y    M E  PLGEALGMPPST+M DD S M T +KSG+FG DLHEV+L   N
Sbjct: 4    YPTPHMNEAKPLGEALGMPPSTFMPDDASLMHTPVKSGSFG-DLHEVEL*ADN 159


>TC16745 similar to UP|Q94A14 (Q94A14) At2g43170/F14B2.11, partial (21%)
          Length = 996

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 2/147 (1%)
 Frame = +3

Query: 83  DGGNVQEGSSSGCDGMMDRSDHGMESRNSSGSSADKSNRRSSLDVKEKDWNAFNVDSNGG 142
           D GN     S     +++  +  +E+R  + S+ DK    +   +     +     S+ G
Sbjct: 552 DQGNNVRKKSQSLVVLVNDKERIIEARQKAASNRDKFRYNAPAGMYRPGSH-----SSSG 716

Query: 143 AGSESYSD--FFSEFGDQNGKGYDHDLNTEVKHANEIPGDQYAQTYNRDSNTEVKLGNEI 200
           A  E Y D  + +   D+NG G + +  +     N   GD+Y + Y      +    ++ 
Sbjct: 717 AYGERYEDDRYGNREEDRNGYGREREWGSRDDDRNSRDGDRYGRDYEERYGRDGYRDDD- 893

Query: 201 PSDGMNASVDYVQYQEGQSYDASARNS 227
            S G + SVDY        YD  +R+S
Sbjct: 894 -SRGRSRSVDY-------QYDTRSRSS 950


>TC8837 similar to UP|Q9LEU7 (Q9LEU7) Serine/threonine protein kinase-like
           protein (CBL-interacting protein kinase 5), partial
           (15%)
          Length = 606

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 18/53 (33%), Positives = 27/53 (49%)
 Frame = +3

Query: 48  GGDDADVNASAFENSSGGGSGGEGKERKEEGDVKLDGGNVQEGSSSGCDGMMD 100
           GG++A+      E   G  +GG+G E  E GD   DGG +  G+  G  G+ +
Sbjct: 192 GGEEAEFEDHGEEGVYGADAGGDGGEEGEGGD---DGGGI*GGAGGGGGGVFE 341


>TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein {Danio
           rerio;} , partial (5%)
          Length = 678

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 34/138 (24%), Positives = 53/138 (37%), Gaps = 10/138 (7%)
 Frame = -2

Query: 43  SNLSIGGDDADVNASAFENSSGGGSGGEGKERKEEGD--------VKLDGGNVQEG--SS 92
           +++S GG+   V    F    GGG GG+G+E+ +E          +   GG V  G    
Sbjct: 386 ADMSKGGEGGMVVTPYF-GGGGGGCGGDGREQGKEASPDIIALPAITEAGGGVVGGRDGG 210

Query: 93  SGCDGMMDRSDHGMESRNSSGSSADKSNRRSSLDVKEKDWNAFNVDSNGGAGSESYSDFF 152
            GC G       G + R +S +  +     +   +K         +  GG G  + SDF 
Sbjct: 209 GGCGG----GGEGEQGRETSPTDLETFEIIALPAIK-------GAEGGGGGGGRALSDFG 63

Query: 153 SEFGDQNGKGYDHDLNTE 170
              G  +G     D+  E
Sbjct: 62  GVEGGGSGALSAEDIGVE 9


>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
           thaliana;}, partial (44%)
          Length = 700

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 39/154 (25%), Positives = 55/154 (35%), Gaps = 17/154 (11%)
 Frame = +2

Query: 10  EDQDDEDFFDKLVEDDVGNVNDEANDSDDVKAFSNLSIGGDDADVNASAFENSSGGGSGG 69
           ED DD+       EDD G   DE +D D          G DD D      E    GG GG
Sbjct: 29  EDDDDDG------EDDDG---DEDDDDDAPGG------GDDDDDEEDEEEEGGVEGGRGG 163

Query: 70  EGKERKEEGDVKLDGGNVQEGSSSGCDGMMDRS-----------------DHGMESRNSS 112
            G    ++ D   D    +E    G + ++ R+                 D G ++ N  
Sbjct: 164 GGDPDDDDDDDDDDDEEEEEEEDLGTEYLVRRTVAAAEDEEASSDFEPEEDEGDDNDNDD 343

Query: 113 GSSADKSNRRSSLDVKEKDWNAFNVDSNGGAGSE 146
           G  A   ++R   D   KD +  +   +GG   E
Sbjct: 344 GEKAGVPSKRKRSD---KDGSGDDDSDDGGEDDE 436



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 8/169 (4%)
 Frame = -2

Query: 1139 RWVE-------EGAAPPAEETALPPPPTTAAFQNGLTEYNLQSALKTEGPPSKEGSDLKT 1191
            RW++         ++PP+ E++ P P             +L      +G P+   S L  
Sbjct: 468  RWIQPYRLEGLSSSSPPSSESSSPEP-------------SLSDLFLFDGTPAFSPSSLSL 328

Query: 1192 SNPELTPGIPPIPPGTNHFSARGRVGIRSRY-VDTFNQGGGNSANLFQSPSVPSAKPVVA 1250
            S+P  + G   +   ++  +A  R   R+RY V   +    +S++   S S  S  P   
Sbjct: 327  SSPSSSSGSKSLDASSSSAAATVR---RTRYSVPKSSSSSSSSSSSSSSSSSSSGSPPPP 157

Query: 1251 ANAKFFIPTPAPSSNEQTMEAIEENNQEDDLAYENPSTSYRNDWSFQSP 1299
                    TP  SS+  +  +          +  +PS+S  +  S  SP
Sbjct: 156  RPPS----TPPSSSSSSSSSSSSPPPGASSSSSSSPSSSSPSSSSSSSP 22


>BP044109 
          Length = 497

 Score = 32.7 bits (73), Expect = 0.40
 Identities = 26/87 (29%), Positives = 39/87 (43%), Gaps = 8/87 (9%)
 Frame = -3

Query: 25  DVGNVNDEANDSDDVKAFSNLSIGGDDADVNASAFEN------SSGGGSGGEGKERKEEG 78
           D G + DE  D   V     + + G D +V   A +         GGG GGEGK+ +EE 
Sbjct: 252 DGGGLGDEVGDGGGVVG---VWVRGVDLEVALEACDGVVLFLFGGGGGGGGEGKK*EEES 82

Query: 79  DVKL--DGGNVQEGSSSGCDGMMDRSD 103
           +V+   +   V       C G++D S+
Sbjct: 81  EVEEE*ESEVVAVWGGCCCSGLVD*SE 1



 Score = 29.6 bits (65), Expect = 3.4
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 1147 PPAEETALP-PPPTTAAFQNGLTEYNLQSALKTEGPPSKEGSDLKTSNPELTPGIPPIPP 1205
            PP   T+ P PPP+T A +   +     S+  + GP     S   +S P  TP  PP PP
Sbjct: 212  PPPSPTSSPKPPPSTFATKPSTSPPETPSS-SSHGPAPTLPSPPSSSTPTSTPS-PPSPP 385


>AV777072 
          Length = 359

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 20/46 (43%), Positives = 25/46 (53%), Gaps = 5/46 (10%)
 Frame = +2

Query: 531 SSAGRPPHALVTF-----GFGGKLIILKDSSLSSSTYGSQGAAQGS 571
           SS GRP H L  F      FGG L    +SS+SSS  G++  + GS
Sbjct: 218 SSTGRPLHRLTAFINFLAVFGGTLEPSPNSSISSSVLGTKKGSSGS 355


>TC8573 similar to UP|Q9SIH5 (Q9SIH5) At2g36090 protein, partial (17%)
          Length = 515

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 24/54 (44%), Positives = 27/54 (49%)
 Frame = +3

Query: 1154 LPPPPTTAAFQNGLTEYNLQSALKTEGPPSKEGSDLKTSNPELTPGIPPIPPGT 1207
            LPPPPT+AA     T    +SA    GPPS        +NP  TP  PP PP T
Sbjct: 222  LPPPPTSAA-SAPKTPSGGKSA-PPRGPPS--------NNP*PTPSSPPSPPPT 353


>TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, partial (81%)
          Length = 1294

 Score = 31.6 bits (70), Expect = 0.90
 Identities = 24/62 (38%), Positives = 28/62 (44%), Gaps = 3/62 (4%)
 Frame = -2

Query: 54  VNASAFENSSGGGSGGE--GKERKEEGDVKLDGGNVQEGSS-SGCDGMMDRSDHGMESRN 110
           V   AF    GGG GGE    E +EEG+    GG  +EG    G +G    S  G   R 
Sbjct: 276 VGGFAFGGDGGGGGGGEEGSGEEREEGEF---GG*GEEGEG*GGAEGERGESSGGYYRRC 106

Query: 111 SS 112
           SS
Sbjct: 105 SS 100


>BI420016 
          Length = 559

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
 Frame = -1

Query: 64  GGGSGGEGKERKEEGDVKLDGGNVQEGSSSGCDGMMDRSDHGMESRNSS--GSSADKSNR 121
           GGG GG G+ R+EEG     G   Q G   G      R   G   R  S  G    +S R
Sbjct: 496 GGGGGGRGRGRREEG-----GRRGQRGGGGGQRRGRCRRASGRGGRIGSRRGRRRRRSRR 332

Query: 122 RSSLDVKEKDWNAFNVDSNGGAGSESYSDFFSEFGDQNG 160
           R     +E+   +       G  SES+  ++   G  NG
Sbjct: 331 RGRRGGRERGVRSRR--GRRGRRSESWGGWWRGSGCGNG 221



 Score = 28.1 bits (61), Expect = 10.0
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
 Frame = -2

Query: 23  EDDVGNVNDEANDSDDVKAFSNLSIGGDDADVNASA----FENSSGGGSGGEGKERKEEG 78
           E + G   +E  D++     + + + G++  V   A         GGG GG G E  EEG
Sbjct: 477 EVEAGEKREEGEDNE-----AEVGVRGEEGVVEPVAEGVGLGAGEGGGDGGVGGEGGEEG 313

Query: 79  DVKL-------DGGNVQEGSSSG 94
           +          +GG V+ G   G
Sbjct: 312 ESGAFGVGEGGEGGGVRVGEDGG 244


>BE122533 
          Length = 349

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 1034 SQSTMAMSSLVPSGSMEPNGEWTADNNR-MTKSNRSVSEPDFGRSPRQETSHDAQG 1088
            S  T   S+ +PSGS++PN  +  D+NR   +SN    E DF  S R E S +  G
Sbjct: 288  STFTSLQSASIPSGSIKPNDLFAYDSNR*SIRSN--CFEVDFFGSAR*EESEEVFG 127


>TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromosome 3, P1
           clone: MSJ11, partial (39%)
          Length = 1403

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 25/132 (18%), Positives = 52/132 (38%)
 Frame = +3

Query: 10  EDQDDEDFFDKLVEDDVGNVNDEANDSDDVKAFSNLSIGGDDADVNASAFENSSGGGSGG 69
           E+QD+    D  V  D         + D+ +A        +DADV        +  G   
Sbjct: 501 ENQDENKAEDTDVNQDEKKAEATDANQDEKRA--------EDADVKEPTHPGENTDGPND 656

Query: 70  EGKERKEEGDVKLDGGNVQEGSSSGCDGMMDRSDHGMESRNSSGSSADKSNRRSSLDVKE 129
           EGK    + +++     V +  + G D + ++ D   E   S   +A  + ++  ++ + 
Sbjct: 657 EGKLNTADEELQASKEKVDDKGAEGSDAVQNKDDGSGEPEKS--EAAPTTEQKIEVEGEN 830

Query: 130 KDWNAFNVDSNG 141
           K+ +   +  +G
Sbjct: 831 KEEHDRGIHESG 866


>BP034485 
          Length = 485

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 25/95 (26%), Positives = 41/95 (42%), Gaps = 17/95 (17%)
 Frame = +3

Query: 48  GGDDADVNASAFENSSGG---------GSGGEGKERK-----EEGDVKLDGGNVQEGSSS 93
           GG+ A+ N +  +N+ GG         G GG GK  K     ++ D+   G +  +G   
Sbjct: 162 GGETANKNKNKNKNNGGGNNKGKEGKKGGGGGGKLDKIDFDFQDFDIPSHGKSGGKGGGG 341

Query: 94  GCDGMMDRSDHGM---ESRNSSGSSADKSNRRSSL 125
           G  G  +  DHG     + N +G   D  ++  S+
Sbjct: 342 GGKGNKNGHDHGHGIGGNMNGNGGHMDPMSQLGSM 446



 Score = 28.1 bits (61), Expect = 10.0
 Identities = 29/132 (21%), Positives = 47/132 (34%)
 Frame = +3

Query: 34  NDSDDVKAFSNLSIGGDDADVNASAFENSSGGGSGGEGKERKEEGDVKLDGGNVQEGSSS 93
           + SD  K   + + GG          ++  GGG GG     K +   K +GG        
Sbjct: 57  SSSDKKKKTKDKNGGGFLVKFLGLGKKSKKGGGGGGGETANKNKNKNKNNGGG------- 215

Query: 94  GCDGMMDRSDHGMESRNSSGSSADKSNRRSSLDVKEKDWNAFNVDSNGGAGSESYSDFFS 153
                   ++ G E +   G           LD  + D+  F++ S+G +G +       
Sbjct: 216 --------NNKGKEGKKGGGGG-------GKLDKIDFDFQDFDIPSHGKSGGKGGGG--- 341

Query: 154 EFGDQNGKGYDH 165
             G  N  G+DH
Sbjct: 342 -GGKGNKNGHDH 374


>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
           abscisic acid-inducible protein, complete
          Length = 972

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 20/82 (24%), Positives = 29/82 (34%)
 Frame = +2

Query: 32  EANDSDDVKAFSNLSIGGDDADVNASAFENSSGGGSGGEGKERKEEGDVKLDGGNVQEGS 91
           E +  D ++  +   I G +  VN +      GGG GG     + EG     GG+   G 
Sbjct: 509 EQSMKDAIEGMNGQDIDGRNVTVNEAQARGRGGGGGGGGYGGGRREGGYGGGGGSRYSGG 688

Query: 92  SSGCDGMMDRSDHGMESRNSSG 113
             G  G      +G       G
Sbjct: 689 GGGGYGGSGGGGYGGRREGGGG 754


>TC11671 similar to UP|Q84WI7 (Q84WI7) Expressed protein, partial (25%)
          Length = 451

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1145 AAPPAEETALPPPPTTAAFQNGLTEYNLQSALKTEGPPSKEG-SDLKTSNPELTPGIPPI 1203
            + PPA  T  P PP  +   N  +   + +A     PP  E     KT +P  TP  PP+
Sbjct: 124  STPPASPTPPPAPPPPSNCLNSSSSVTVVTA*TCSNPPIAECLPSKKTPSPPSTP--PPL 297

Query: 1204 PP 1205
             P
Sbjct: 298  SP 303


>TC9467 weakly similar to UP|Q8WQ86 (Q8WQ86) Microtubule-associated protein
            EB1, partial (7%)
          Length = 593

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 21/70 (30%), Positives = 25/70 (35%)
 Frame = +1

Query: 1145 AAPPAEETALPPPPTTAAFQNGLTEYNLQSALKTEGPPSKEGSDLKTSNPELTPGIPPIP 1204
            +AP    T  PPPP T    N L       A     PP    +   + +P  T G    P
Sbjct: 235  SAPGDPSTPQPPPPITHLTANAL-------ASPIAPPPPSPSTSPNSPSPTTTSGATTPP 393

Query: 1205 PGTNHFSARG 1214
            P T     RG
Sbjct: 394  PNTASSRERG 423


>TC16495 similar to UP|Q9LUA5 (Q9LUA5) Genomic DNA, chromosome 3, P1 clone:
            MPE11, partial (14%)
          Length = 919

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 35/149 (23%), Positives = 60/149 (39%), Gaps = 10/149 (6%)
 Frame = +1

Query: 964  SSLEERIRTHQQGGYAANLAPGKL---VGKLLNFFDSTAHRVVGG-LPPPAPSSQGNVHG 1019
            + ++++ +T +   ++A  AP  +   +   L+FF    + +    LPPP PS   ++H 
Sbjct: 85   NKVKKKKKTEKDAAFSATHAPVSIWP*M*PYLSFFSHPIYTLNPFFLPPPLPSHFLSLHS 264

Query: 1020 NEQNYQSGAHRVSNSQSTMAMSSLVPSGSMEPNGEWTADNN------RMTKSNRSVSEPD 1073
            N     S  H V    +  A S    S S +       +NN      R+ + N     P+
Sbjct: 265  NNIINNSTHHSVCFINTLFAFSFFCFSISFQMGESCNNNNNNNDTRKRVREDNSEADSPE 444

Query: 1074 FGRSPRQETSHDAQGKASEGTSRFSRFSF 1102
              + PR  +  D     S G +R S   F
Sbjct: 445  -SKLPRLSSGPDVNSPES-GLARVSSGEF 525


>TC16098 homologue to UP|Q8LAQ5 (Q8LAQ5) Flower pigmentation protein ATAN11,
            partial (79%)
          Length = 919

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 30/102 (29%), Positives = 42/102 (40%)
 Frame = +1

Query: 1144 GAAPPAEETALPPPPTTAAFQNGLTEYNLQSALKTEGPPSKEGSDLKTSNPELTPGIPPI 1203
            G +P   +   PPPP  +  +  LTE    S +    PPS  G+ L  +  E     PP 
Sbjct: 391  GGSPTPMKPNPPPPPPASNSRASLTETRTAS-IVAR*PPS-IGTKLSLAASEPPASTPPA 564

Query: 1204 PPGTNHFSARGRVGIRSRYVDTFNQGGGNSANLFQSPSVPSA 1245
            P G +    +  +   SR +  F    G +A  F  PS P A
Sbjct: 565  PFGISR--RKPSIPSSSRMIRRFTTSRG-AALGFSPPSPPMA 681


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.309    0.128    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,939,261
Number of Sequences: 28460
Number of extensions: 326411
Number of successful extensions: 1999
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of query: 1399
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1297
effective length of database: 1,994,680
effective search space: 2587099960
effective search space used: 2587099960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)


Medicago: description of AC138087.1