BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138063.3 - phase: 0 /pseudo
(111 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15671 30 0.077
TC8236 28 0.17
AV409550 28 0.17
AV418945 28 0.22
TC12338 similar to GB|AAP13422.1|30023778|BT006314 At2g01660 {Ar... 28 0.22
TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich ... 28 0.29
TC8238 28 0.29
TC18617 weakly similar to UP|Q9FPQ5 (Q9FPQ5) Gamete-specific hyd... 27 0.38
TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein (At2g... 27 0.50
TC8573 similar to UP|Q9SIH5 (Q9SIH5) At2g36090 protein, partial ... 27 0.50
TC14262 UP|Q9MBE5 (Q9MBE5) Cytochrome P450, complete 26 0.85
AV424848 26 0.85
BP036471 26 1.1
BP075330 26 1.1
TC19505 weakly similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, par... 26 1.1
TC16141 weakly similar to GB|AAC77862.2|20197419|AC005623 Argona... 25 1.4
AV765555 25 1.4
TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.3... 25 1.4
BF177726 25 1.4
AU088795 24 3.2
>TC15671
Length = 546
Score = 29.6 bits (65), Expect = 0.077
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 50 PKWLAGCVLEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQLP 92
P++LAG + S+ T++ + ASS P TP NPPQ P
Sbjct: 141 PRFLAGDPPQRSSA-TRSPIAAPPSASSPPSTPPPHQNPPQTP 16
>TC8236
Length = 840
Score = 28.5 bits (62), Expect = 0.17
Identities = 18/63 (28%), Positives = 29/63 (45%), Gaps = 8/63 (12%)
Frame = +1
Query: 40 ENAWKLLRDEPK-----WLAG---CVLEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQL 91
E W L++ + W+ G C+L P A RT S + +SS+ +P + PP +
Sbjct: 109 EKKWLRLQESNEGSW*LWMKGMRACMLCPGASRTLLSRTTKTTSSSSMSSPLVSFTPPSM 288
Query: 92 PIG 94
G
Sbjct: 289 AQG 297
>AV409550
Length = 413
Score = 28.5 bits (62), Expect = 0.17
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 50 PKWLAGCVLEPSAKRTKN-SASGAYLASSNPPTPTSEYNPPQLPI 93
P WL E SA+ + + +ASG+ LASS+ P+ + E NP L +
Sbjct: 276 PAWLTPS--ETSARPSSSPTASGSALASSSAPSSSPEGNPTPLSL 404
>AV418945
Length = 413
Score = 28.1 bits (61), Expect = 0.22
Identities = 11/41 (26%), Positives = 23/41 (55%)
Frame = +2
Query: 58 LEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQLPIGQKAA 98
+ PS+ ++ +GAYL++S+ P P + + L + + A
Sbjct: 221 MPPSSNSPLHTTAGAYLSASSQPLPAANVSSSSLGVSENEA 343
>TC12338 similar to GB|AAP13422.1|30023778|BT006314 At2g01660 {Arabidopsis
thaliana;}, partial (26%)
Length = 903
Score = 28.1 bits (61), Expect = 0.22
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +3
Query: 46 LRDEPKWLAGCVLEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQLPIGQKAAK 99
LR+ L G + + +RT GA P PTS Y P Q P G + K
Sbjct: 216 LRETILALGGSQIHGAVRRTLKIPIGADPPRPCKPHPTSVYTPAQHPSGSRHQK 377
>TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich RNA
binding protein 7 {Arabidopsis thaliana;} , partial
(19%)
Length = 483
Score = 27.7 bits (60), Expect = 0.29
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 54 AGCVLEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQLP 92
A V SA R+ + + A L+ S PP P++ PP LP
Sbjct: 56 ATAVNPTSASRSSPTTAPASLSLSPPPQPSNPPPPPPLP 172
>TC8238
Length = 506
Score = 27.7 bits (60), Expect = 0.29
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Frame = +2
Query: 40 ENAWKLLRDEPK-----WLAG---CVLEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQL 91
E W L++ + W+ G C+L P A RT S + +SS+ +P + PP +
Sbjct: 56 EKKWLRLQESNEGSW*LWMKGMRACMLCPGASRTLLSRTTKTTSSSSMSSPLVSFTPPSM 235
>TC18617 weakly similar to UP|Q9FPQ5 (Q9FPQ5) Gamete-specific
hydroxyproline-rich glycoprotein a2, partial (13%)
Length = 578
Score = 27.3 bits (59), Expect = 0.38
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +3
Query: 70 SGAYLASSNPPTPTSEYNPPQLP 92
S YL SS+PP+P++ +PP P
Sbjct: 147 SPPYLISSSPPSPSASSSPPPGP 215
>TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein
(At2g16660/T24I21.7), partial (40%)
Length = 1122
Score = 26.9 bits (58), Expect = 0.50
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 58 LEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQLPIGQKAAKKKGKEKH 106
+E + R+KN S + S PP P + +PP LP+ + + +H
Sbjct: 1120 IEXT*TRSKNPHSSSPPISCAPPPPPAAPSPPPLPLPPPPSPPRSPCRH 974
>TC8573 similar to UP|Q9SIH5 (Q9SIH5) At2g36090 protein, partial (17%)
Length = 515
Score = 26.9 bits (58), Expect = 0.50
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = +3
Query: 79 PPTPTSEYNPPQLPIGQKAAKKKG 102
PP PTS + P+ P G K+A +G
Sbjct: 225 PPPPTSAASAPKTPSGGKSAPPRG 296
>TC14262 UP|Q9MBE5 (Q9MBE5) Cytochrome P450, complete
Length = 1960
Score = 26.2 bits (56), Expect = 0.85
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 60 PSAKRTKNSASGAYLASSNPPTPTSEYNPPQLP 92
P +K +K+ AS + + +P PTS PPQLP
Sbjct: 168 PPSKPSKSQASSSIRRTPSPFGPTS---PPQLP 257
>AV424848
Length = 330
Score = 26.2 bits (56), Expect = 0.85
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 51 KWLAGCVLEPSAKRTKNSASGAYLASSNPP 80
++ + C L PS+ T SASG+ + S NPP
Sbjct: 16 QYSSSCSLHPSS--TMLSASGSLIGSPNPP 99
>BP036471
Length = 531
Score = 25.8 bits (55), Expect = 1.1
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = +2
Query: 88 PPQLPIGQKAAKKKGKEK 105
P LP+G+K+ KGKEK
Sbjct: 443 PAPLPLGKKSVSLKGKEK 496
>BP075330
Length = 452
Score = 25.8 bits (55), Expect = 1.1
Identities = 17/46 (36%), Positives = 23/46 (49%)
Frame = -1
Query: 51 KWLAGCVLEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQLPIGQK 96
K L ++ SAK +K A+ S+P E NPP LP GQ+
Sbjct: 431 KLLVSSLINESAK-SKERVDIAHDPVSHPSFLA*ESNPPSLPRGQR 297
>TC19505 weakly similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, partial (12%)
Length = 723
Score = 25.8 bits (55), Expect = 1.1
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 50 PKWLAGCVLEPSAKRTKNSASGAYLASSNPPTP 82
P WL PSA T + S A SSNP P
Sbjct: 232 PSWLMPPSTFPSAAATSSPTSEASSQSSNPEKP 330
>TC16141 weakly similar to GB|AAC77862.2|20197419|AC005623 Argonaute
(AGO1)-like protein {Arabidopsis thaliana;} , partial
(14%)
Length = 598
Score = 25.4 bits (54), Expect = 1.4
Identities = 10/29 (34%), Positives = 16/29 (54%)
Frame = +3
Query: 74 LASSNPPTPTSEYNPPQLPIGQKAAKKKG 102
L ++ PP P + P +LPI ++ KG
Sbjct: 162 LPAAPPPEPVKKKTPARLPIARRGLGTKG 248
>AV765555
Length = 283
Score = 25.4 bits (54), Expect = 1.4
Identities = 12/31 (38%), Positives = 14/31 (44%)
Frame = +3
Query: 76 SSNPPTPTSEYNPPQLPIGQKAAKKKGKEKH 106
+ PP P QLPI +K K K KH
Sbjct: 84 TDQPPPPIYSTQKKQLPIFEKKIKDKSGMKH 176
>TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.35
{Arabidopsis thaliana;} , partial (16%)
Length = 1208
Score = 25.4 bits (54), Expect = 1.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 62 AKRTKNSASGAYLASSNPPTPTSEYNPP 89
A ++ S+SG+ + +PP PT+ PP
Sbjct: 132 ATSSRTSSSGSTPTAVSPPNPTTPATPP 215
>BF177726
Length = 509
Score = 25.4 bits (54), Expect = 1.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 78 NPPTPTSEYNPPQLP 92
NPP+PTS+ PP P
Sbjct: 81 NPPSPTSQKPPPSKP 125
>AU088795
Length = 482
Score = 24.3 bits (51), Expect = 3.2
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 56 CVLEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQLP 92
C + A + A SS PP+P S PP P
Sbjct: 296 CAINAMASYPTKQSXTAPSPSSTPPSPPSSPPPPPPP 406
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,097,335
Number of Sequences: 28460
Number of extensions: 28657
Number of successful extensions: 314
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of query: 111
length of database: 4,897,600
effective HSP length: 87
effective length of query: 24
effective length of database: 2,421,580
effective search space: 58117920
effective search space used: 58117920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)
Medicago: description of AC138063.3