TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138017.8 - phase: 2 /pseudo
         (600 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17446 weakly similar to UP|O04383 (O04383) Serine /threonine k...    28  5.6
TC14066 homologue to UP|O64970 (O64970) Cationic peroxidase 2  ,...    27  7.3
AV424993                                                               27  7.3
TC8731 homologue to UP|Q9LNS1 (Q9LNS1) F1L3.2, partial (34%)           27  7.3
TC19281 similar to UP|Q9LSG4 (Q9LSG4) Genomic DNA, chromosome 3,...    27  9.5

>TC17446 weakly similar to UP|O04383 (O04383) Serine /threonine kinase
           precursor, partial (4%)
          Length = 384

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 11/29 (37%), Positives = 19/29 (64%)
 Frame = -3

Query: 112 LQNGSLLHLFPSMQQIHHIFSLRSMLFVA 140
           +QN  L HL PS +Q+H+ ++   +L +A
Sbjct: 172 IQNLKLTHLLPSSEQLHYAYNFLVLLEMA 86


>TC14066 homologue to UP|O64970 (O64970) Cationic peroxidase 2  , partial
           (92%)
          Length = 1436

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 112 LQNGSLLHLFPSMQQIHHIFSLRSMLFVAWEPDIKLL 148
           L  GS L LFP +  +   FSL  M  + WE  I LL
Sbjct: 402 LWRGSALELFPVLISL---FSLPEMALLRWEDPISLL 503


>AV424993 
          Length = 335

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 12/31 (38%), Positives = 19/31 (60%)
 Frame = +1

Query: 121 FPSMQQIHHIFSLRSMLFVAWEPDIKLLLYM 151
           F  MQ+  H+F+  S L++ W   IKLL+ +
Sbjct: 94  FALMQRGRHLFNQESRLWIGWAL*IKLLMIL 186


>TC8731 homologue to UP|Q9LNS1 (Q9LNS1) F1L3.2, partial (34%)
          Length = 721

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = -1

Query: 202 IALKERFLSNLLMLLVLQKLV----RCCLSFSRK 231
           + L++R L   L+LL+LQ ++     CC+ FSRK
Sbjct: 190 LLLEKRLLHKSLLLLLLQPVILHFPACCV*FSRK 89


>TC19281 similar to UP|Q9LSG4 (Q9LSG4) Genomic DNA, chromosome 3, P1 clone:
           MJL12, partial (8%)
          Length = 549

 Score = 26.9 bits (58), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 53  VMKSKHKEDNLGQWLLHLKR 72
           ++K KHK+ NL QWLL   R
Sbjct: 322 IIKEKHKD*NLRQWLLFRAR 263


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.360    0.161    0.561 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,473,914
Number of Sequences: 28460
Number of extensions: 175168
Number of successful extensions: 2074
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 1603
length of query: 600
length of database: 4,897,600
effective HSP length: 95
effective length of query: 505
effective length of database: 2,193,900
effective search space: 1107919500
effective search space used: 1107919500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 58 (26.9 bits)