BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138017.12 + phase: 1 /pseudo
(95 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19465 similar to AAR92318 (AAR92318) At5g10310, partial (16%) 69 2e-13
TC16736 similar to UP|BAD09309 (BAD09309) Type 1a plasma membran... 64 4e-12
TC17995 similar to AAR92318 (AAR92318) At5g10310, partial (25%) 49 1e-07
BP040295 42 1e-05
BP068373 27 0.77
CB827039 27 0.77
TC19385 26 1.3
TC9911 similar to UP|AAO25581 (AAO25581) Cellulose synthase, par... 25 2.9
AV778844 25 2.9
TC10165 weakly similar to UP|Q7PM21 (Q7PM21) ENSANGP00000014449 ... 24 3.8
TC17001 24 3.8
TC19264 homologue to UP|O24293 (O24293) Chloroplast inner envelo... 24 5.0
AV773353 23 6.5
AV770945 23 6.5
TC16616 similar to GB|AAM47365.1|21360499|AY113057 AT4g32140/F10... 23 6.5
TC16213 homologue to UP|Q9LFD4 (Q9LFD4) Protein kinase-like prot... 23 8.5
TC14206 similar to PIR|T49142|T49142 CCR4-associated factor 1-li... 23 8.5
TC13585 23 8.5
TC12808 weakly similar to GB|CAA16564.1|2827556|ATT12H17 predict... 23 8.5
TC11346 similar to GB|AAD18096.1|4337175|T31J12 ESTs gb|T20589, ... 23 8.5
>TC19465 similar to AAR92318 (AAR92318) At5g10310, partial (16%)
Length = 547
Score = 68.6 bits (166), Expect = 2e-13
Identities = 33/78 (42%), Positives = 43/78 (54%), Gaps = 5/78 (6%)
Frame = +3
Query: 23 LAEKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQ-----IHRSHYDSAAYSSRGDGL 77
L EK ++GS PP C +C C C AVQVP +PS + + R + +
Sbjct: 72 LDEKNRLGSMPPTCHNKCNQCHPCMAVQVPNLPSHDRVVGPGVPRIASMEGLFLQANNRY 251
Query: 78 SNYKPISWKCKCGDYFFN 95
SNYKP+SWKC CG +FFN
Sbjct: 252 SNYKPLSWKCHCGGHFFN 305
>TC16736 similar to UP|BAD09309 (BAD09309) Type 1a plasma membrane
receptor-like, partial (22%)
Length = 383
Score = 63.9 bits (154), Expect = 4e-12
Identities = 31/68 (45%), Positives = 39/68 (56%)
Frame = +3
Query: 28 QIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYSSRGDGLSNYKPISWKC 87
+IGS PP CE +C C CEA+QVP S+ R H S G +NY+P SWKC
Sbjct: 45 RIGSSPPSCEHKCYGCTPCEAIQVPST-SRSSSRRRH------SHLGIQYANYEPESWKC 203
Query: 88 KCGDYFFN 95
KCG F++
Sbjct: 204 KCGPSFYS 227
>TC17995 similar to AAR92318 (AAR92318) At5g10310, partial (25%)
Length = 581
Score = 48.9 bits (115), Expect = 1e-07
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Frame = +1
Query: 46 CEAVQVPIVPSKVQIH-------RSHYDSAAYSS-RGDGLSNYKPISWKCKCGDYFFN 95
C AVQVP +P+ ++ + ++ Y S +G SNYKP+ WKC CGD+FFN
Sbjct: 1 CMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYSNYKPLGWKCHCGDHFFN 174
>BP040295
Length = 526
Score = 42.4 bits (98), Expect = 1e-05
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -2
Query: 30 GSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYSSRGDGLSNYKPISWKCKC 89
GS PP+C +C C C V VP+ P + Y P +W+CKC
Sbjct: 270 GSFPPRCAAKCGRCAPCRPVHVPVPPG-----------------NPVTAEYYPEAWRCKC 142
Query: 90 GDYFF 94
G+ +
Sbjct: 141 GNRLY 127
>BP068373
Length = 431
Score = 26.6 bits (57), Expect = 0.77
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 20 GSMLAEKLQIGSRPPKCERRCRS-CVHCEAV 49
G + + + SRP C+R C + CV C+ V
Sbjct: 394 GGLCKSRCSVHSRPHLCKRACGTCCVRCKCV 302
>CB827039
Length = 524
Score = 26.6 bits (57), Expect = 0.77
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 69 AYSSRGDGLSNYKPISWKCKC 89
A+ SRG+ L+NY S+ KC
Sbjct: 320 AFGSRGESLNNYSIFSFSIKC 382
>TC19385
Length = 580
Score = 25.8 bits (55), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 65 YDSAAYSSRGDGLSNYKPISWKC 87
YDSA + +G NY+ SW+C
Sbjct: 423 YDSA*TQTDMEGRRNYRSFSWEC 491
>TC9911 similar to UP|AAO25581 (AAO25581) Cellulose synthase, partial
(31%)
Length = 1092
Score = 24.6 bits (52), Expect = 2.9
Identities = 10/29 (34%), Positives = 14/29 (47%)
Frame = +1
Query: 62 RSHYDSAAYSSRGDGLSNYKPISWKCKCG 90
RSH + Y G+SNY + +CG
Sbjct: 31 RSHKEGRGYECLDAGISNYLECTLSSECG 117
>AV778844
Length = 193
Score = 24.6 bits (52), Expect = 2.9
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = -1
Query: 32 RPPKCERRCRSCVHCEAVQVPIVPSKVQ 59
R P+C R CR +A+ PI P +++
Sbjct: 151 RWPECNRNCRLR*TPDAISRPIKPERIE 68
>TC10165 weakly similar to UP|Q7PM21 (Q7PM21) ENSANGP00000014449 (Fragment),
partial (4%)
Length = 525
Score = 24.3 bits (51), Expect = 3.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 36 CERRCRSCVHCEAVQVP 52
C C +C H EAV++P
Sbjct: 256 CWSSCCNCFHMEAVEIP 306
>TC17001
Length = 565
Score = 24.3 bits (51), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 80 YKPISWKCKCGDY 92
+KPI WK KC +Y
Sbjct: 72 FKPIFWKPKCEEY 110
>TC19264 homologue to UP|O24293 (O24293) Chloroplast inner envelope protein,
110 kDa (IEP110) precursor, partial (10%)
Length = 431
Score = 23.9 bits (50), Expect = 5.0
Identities = 12/42 (28%), Positives = 19/42 (44%)
Frame = +3
Query: 12 AKNGMEENGSMLAEKLQIGSRPPKCERRCRSCVHCEAVQVPI 53
A +G + N + + L G C RCR C ++VP+
Sbjct: 264 ATSGPQRN*GIC*QALAAGQARRLCCNRCRRCRSWIRIRVPV 389
>AV773353
Length = 346
Score = 23.5 bits (49), Expect = 6.5
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = -1
Query: 43 CVHCEAVQVPIVPSKVQIHRSHYD 66
C+HCEA V +V + RSH D
Sbjct: 295 CIHCEAGNV-----EVNVLRSHCD 239
>AV770945
Length = 422
Score = 23.5 bits (49), Expect = 6.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +3
Query: 17 EENGSMLAEKLQIGSRPPKCERRCRSCVHCE 47
+ N + ++ I + CE+R + C HCE
Sbjct: 75 DNNHISITTQILISNSTL*CEQRVQQCGHCE 167
>TC16616 similar to GB|AAM47365.1|21360499|AY113057 AT4g32140/F10N7_50
{Arabidopsis thaliana;}, partial (27%)
Length = 883
Score = 23.5 bits (49), Expect = 6.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 33 PPKCERRCRSC 43
PP RRCRSC
Sbjct: 118 PPSLPRRCRSC 150
>TC16213 homologue to UP|Q9LFD4 (Q9LFD4) Protein kinase-like protein,
partial (28%)
Length = 653
Score = 23.1 bits (48), Expect = 8.5
Identities = 14/53 (26%), Positives = 20/53 (37%)
Frame = -1
Query: 35 KCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYSSRGDGLSNYKPISWKC 87
+C C C C V S + RS + S SSR + ++ W C
Sbjct: 347 ECRGACCCCNCC*RVASSKSRSDPKRTRSEFASECTSSRSNRFRRWRLSFWNC 189
>TC14206 similar to PIR|T49142|T49142 CCR4-associated factor 1-like protein
- Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(87%)
Length = 1151
Score = 23.1 bits (48), Expect = 8.5
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 33 PPKCERRCR 41
PP+C RRCR
Sbjct: 605 PPECHRRCR 631
>TC13585
Length = 519
Score = 23.1 bits (48), Expect = 8.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -2
Query: 7 NLNEVAKNGMEENGSMLAEKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHY 65
NL+ + NG +NG +A K + C R C+ + +QVP + + + +S +
Sbjct: 230 NLSPIT-NGSLQNGYGMAYKQNVDHINRSCNRHCQRVI--RLLQVPYLVAGIPDGQSQW 63
>TC12808 weakly similar to GB|CAA16564.1|2827556|ATT12H17 predicted
protein {Arabidopsis thaliana;}, partial (32%)
Length = 624
Score = 23.1 bits (48), Expect = 8.5
Identities = 7/18 (38%), Positives = 15/18 (82%)
Frame = -3
Query: 16 MEENGSMLAEKLQIGSRP 33
M+E +++ +++Q+GSRP
Sbjct: 79 MQETHTLIGKRVQLGSRP 26
>TC11346 similar to GB|AAD18096.1|4337175|T31J12 ESTs gb|T20589, gb|T04648,
gb|AA597906, gb|T04111, gb|R84180, gb|R65428, gb|T44439,
gb|T76570, gb|R90004, gb|T45020, gb|T42457, gb|T20921,
gb|AA042762 and gb|AA720210 come from this gene.
{Arabidopsis thaliana;}, partial (79%)
Length = 555
Score = 23.1 bits (48), Expect = 8.5
Identities = 12/55 (21%), Positives = 25/55 (44%), Gaps = 9/55 (16%)
Frame = -2
Query: 21 SMLAEKLQIGSRPPKCERRCRSCVHCEA------VQVPI---VPSKVQIHRSHYD 66
S+ + + +R + R CR+C C + +Q+P P + + SH++
Sbjct: 362 SLSQPEQSLPARTKQASRSCRTCAWCSSSASATPIQIPC*FHTPPCLSVEVSHWE 198
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,107,387
Number of Sequences: 28460
Number of extensions: 28539
Number of successful extensions: 182
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of query: 95
length of database: 4,897,600
effective HSP length: 71
effective length of query: 24
effective length of database: 2,876,940
effective search space: 69046560
effective search space used: 69046560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)
Medicago: description of AC138017.12