BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138015.15 + phase: 0 /pseudo
(821 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18710 63 2e-10
TC17284 similar to UP|Q93WZ9 (Q93WZ9) Phosphoenolpyruvate carbox... 32 0.31
TC19442 weakly similar to UP|Q8L749 (Q8L749) AT5g13390/T22N19_40... 31 0.69
TC10531 similar to UP|Q96UV7 (Q96UV7) Endo-1,4-beta-xylanase , ... 31 0.90
TC14056 homologue to UP|P93769 (P93769) Elongation factor-1 alph... 30 1.5
BP052580 30 2.0
AV769791 29 2.6
BF177679 29 3.4
AU089244 29 3.4
TC16003 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcri... 28 4.5
TC8193 similar to UP|Q9M5J4 (Q9M5J4) Beta-galactosidase (Lactas... 28 4.5
BP080135 28 4.5
TC19383 28 5.9
TC11039 weakly similar to UP|O65074 (O65074) YGL010w-like protei... 28 5.9
TC10322 similar to UP|O64634 (O64634) At2g45540 protein, partial... 28 7.7
TC10197 similar to UP|Q94AB2 (Q94AB2) AT3g58640/F14P22_230, part... 28 7.7
>TC18710
Length = 843
Score = 62.8 bits (151), Expect = 2e-10
Identities = 34/98 (34%), Positives = 54/98 (54%), Gaps = 2/98 (2%)
Frame = +2
Query: 419 FVKGRVIFDNIILSHELVKSYSRKGISPR--CMVKIDLQKAYYSVE*PFINYLMLEMGFP 476
F++GR I DN+++ E + +R G R ++K+D+ KAY VE F+ +L GF
Sbjct: 467 FIQGRQIQDNLLIVQEAFHAINRPGALGRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFS 646
Query: 477 CKFVN*AMACLTTTSYTYNVNGDLTRPFAAKKGLRQGD 514
+V M ++ SY Y +NG + ++GLRQGD
Sbjct: 647 TNWVKMIMILVSGVSYNYKINGVVGPKLLPQRGLRQGD 760
>TC17284 similar to UP|Q93WZ9 (Q93WZ9) Phosphoenolpyruvate carboxylase
housekeeping isozyme pepc2 (Fragment) , partial (35%)
Length = 577
Score = 32.3 bits (72), Expect = 0.31
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 796 YFDNEGYRCWQAKRWLIKV 814
YFD+EGY CW AK L KV
Sbjct: 366 YFDHEGYCCWHAKHRLSKV 422
>TC19442 weakly similar to UP|Q8L749 (Q8L749) AT5g13390/T22N19_40, partial
(13%)
Length = 541
Score = 31.2 bits (69), Expect = 0.69
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 80 HWVKFFLKEYLITVLYVWICLVLLLQRILLSYL 112
HW K L ++++ VLYV+ VL+L RIL ++
Sbjct: 407 HWSKVHLNDHILCVLYVFSI*VLMLFRILPKFV 505
>TC10531 similar to UP|Q96UV7 (Q96UV7) Endo-1,4-beta-xylanase , partial
(6%)
Length = 387
Score = 30.8 bits (68), Expect = 0.90
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 561 CCCFLEVMWILSLSFLKLLACLVLLLALKLIKLRA 595
C C WIL L+ + LLACL++L+ LI+ R+
Sbjct: 155 CYCLFRTFWIL-LATILLLACLIILVVWILIQPRS 256
>TC14056 homologue to UP|P93769 (P93769) Elongation factor-1 alpha, complete
Length = 1897
Score = 30.0 bits (66), Expect = 1.5
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Frame = +2
Query: 283 WWTKISSREVLCYLSISKTCCA----QSSQPWRSKMRYSP-----------WILLRLQVL 327
WW+++S +L + +S TC +SS+ WR + + +P WIL + +
Sbjct: 1301 WWSRLSPSILLLVVLLSGTCVKRLLWESSRVWRRRTQLAPRSPRLHRKRSKWILAFCKFM 1480
Query: 328 MVTVFVSLNAL-GTLLVIV 345
+ + + + G LL I+
Sbjct: 1481 *TIIIIMVTEISGDLLAII 1537
>BP052580
Length = 503
Score = 29.6 bits (65), Expect = 2.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 731 VTIIFLSHSTCIDNYFEI 748
V IIF+SH C+DN+F +
Sbjct: 74 VKIIFISHKLCLDNFFSV 21
>AV769791
Length = 585
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = -1
Query: 576 LKLLACLVLLLALKLIKLRAQFIWEVYPRAFKILLSLSLTSSKVRFLLGTL 626
LK ACLVL+ LK++ L + + V+P F++L ++ L + LL L
Sbjct: 582 LKYCACLVLIWLLKMVDLTIEQVA*VFP--FQVLKAMLLVVLSLGLLLQAL 436
>BF177679
Length = 331
Score = 28.9 bits (63), Expect = 3.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 187 MNLDLIEAEKVCLSSLKKWSTIEEQIW 213
+N +L E+ KVCLS L W+ ++W
Sbjct: 197 LNPNLYESGKVCLSLLNTWTGTATEVW 277
>AU089244
Length = 352
Score = 28.9 bits (63), Expect = 3.4
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 72 VGCKGSTMHWVKFFLK---EYLITVLYVWICLVLLLQRILLSYLLM 114
VGCK +M+ V L ++++ + +W+ L+LLL + + YLL+
Sbjct: 75 VGCKVISMNKVLILLDLAAQHVLAIQAIWMNLLLLLSQKMTLYLLL 212
>TC16003 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcription
factor 17 (WRKY DNA-binding protein 17), partial (20%)
Length = 446
Score = 28.5 bits (62), Expect = 4.5
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 569 WILSLSF--LKLLACLVLLLALKLIKLRAQFIWEVYPRAFKILLSLSLTSSK 618
W +S F LK L L+LLL L L + A + + A K L SLS +SSK
Sbjct: 96 WSISFGFSLLKPLLFLLLLLLLLLPPITATVLISITLTAPKSLTSLSQSSSK 251
>TC8193 similar to UP|Q9M5J4 (Q9M5J4) Beta-galactosidase (Lactase) ,
partial (80%)
Length = 2257
Score = 28.5 bits (62), Expect = 4.5
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -1
Query: 275 VVLLIRYLWWTKISSREVLCYLSISKTC 302
++L +R+ +WT +S +++LC+ + C
Sbjct: 127 LILYLRHNYWTTLSLKQLLCFHHVDNLC 44
>BP080135
Length = 519
Score = 28.5 bits (62), Expect = 4.5
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -1
Query: 556 VLLMICCCFLEVMWILSLSFLKLLACLVLLLALKLI 591
++LM CCC L+ ++++ + LKL + VL L + L+
Sbjct: 321 IILMGCCC-LQALYLIRVKRLKLPSICVLSLLITLV 217
>TC19383
Length = 558
Score = 28.1 bits (61), Expect = 5.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 294 CYLSISKTCCAQSSQPWRSKMRYSPWILLRLQVLMVTVFV 333
C+LS S TCC SS ++ P ++ L L + + +
Sbjct: 230 CFLSHSPTCCTLSSSSLSPTLQSKPKLIYHLLSLSIFIII 349
>TC11039 weakly similar to UP|O65074 (O65074) YGL010w-like protein, partial
(79%)
Length = 733
Score = 28.1 bits (61), Expect = 5.9
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Frame = -3
Query: 134 LHTNLLTNIWFKLKALKKDLKELNS-THFQGTTKKVEDARTALV--DVQRQLSSDPMNLD 190
LH +L + IWF K +DLK +H + +K V+ +R + + ++LSS NL
Sbjct: 551 LHPSLKSGIWFISKG*LEDLKNHKEWSH*KSLSKVVQQSRCTFLKQTMTKKLSSPTKNLG 372
Query: 191 LI-------EAEKVC 198
EAE VC
Sbjct: 371 SQHNLPSE*EAEGVC 327
>TC10322 similar to UP|O64634 (O64634) At2g45540 protein, partial (5%)
Length = 678
Score = 27.7 bits (60), Expect = 7.7
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Frame = +3
Query: 77 STMHWVK----------FFLKEYLITVLYVWICLVLLLQRILLSYLLMY*LTII 120
+++HW+ FF +LITV VWI +LLL I S LL++* I+
Sbjct: 234 NSIHWLSLVIMI*RSILFFPGFFLITVQRVWIFQILLLIEIFQS-LLVH*TQIV 392
>TC10197 similar to UP|Q94AB2 (Q94AB2) AT3g58640/F14P22_230, partial (13%)
Length = 660
Score = 27.7 bits (60), Expect = 7.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 554 MCVLLMICCCFLEVMWILSLSFLKLLACLV 583
M LL ICCC + ++ S +++L+ C++
Sbjct: 351 MLCLLSICCCICRLSFVHSELWVELVPCVI 440
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.348 0.153 0.523
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,828,226
Number of Sequences: 28460
Number of extensions: 275980
Number of successful extensions: 3222
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3217
length of query: 821
length of database: 4,897,600
effective HSP length: 98
effective length of query: 723
effective length of database: 2,108,520
effective search space: 1524459960
effective search space used: 1524459960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC138015.15