TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138012.7 + phase: 0 /pseudo
         (990 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV778782                                                               35  0.045
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela...    30  1.9

>AV778782 
          Length = 351

 Score = 35.4 bits (80), Expect = 0.045
 Identities = 18/43 (41%), Positives = 26/43 (59%)
 Frame = -1

Query: 944 ACTLLET*LNQKRLWLRKWHRRKIRRMCSPSHCLDQDSSIAWT 986
           + TL E  L   +L L+K+ R +I++ C PSH     SS+AWT
Sbjct: 348 SATLSEILLQLVKL*LKKFTRMRIQQTCLPSHFQMSSSSLAWT 220


>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
           polyprotein from transposon TNT 1-94 [Contains: Protease
           ; Reverse transcriptase ; Endonuclease] , partial (6%)
          Length = 498

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 20/46 (43%), Positives = 22/46 (47%)
 Frame = +3

Query: 918 CIVIVKVPFT*QIIKCIMKGQSTLTFACTLLET*LNQKRLWLRKWH 963
           CIVI K  FT   I   ++  STL F    L   LN K L L K H
Sbjct: 174 CIVITKALFTLARILLFIQDPSTLMFVIIGLRDVLNSKLLELEKIH 311


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.370    0.164    0.642 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,306,249
Number of Sequences: 28460
Number of extensions: 266321
Number of successful extensions: 3674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 1612
Number of HSP's gapped (non-prelim): 2241
length of query: 990
length of database: 4,897,600
effective HSP length: 99
effective length of query: 891
effective length of database: 2,080,060
effective search space: 1853333460
effective search space used: 1853333460
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 60 (27.7 bits)