TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138011.4 + phase: 0 
         (505 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP033315                                                               55  4e-08
BP031377                                                               43  1e-04
AV769827                                                               37  0.008
AW428780                                                               32  0.32
BP056393                                                               27  6.0
TC9091 similar to UP|Q9Y7R4 (Q9Y7R4) Set domain protein, transcr...    27  7.8
BP045175                                                               27  7.8
TC14878                                                                27  7.8

>BP033315 
          Length = 433

 Score = 54.7 bits (130), Expect = 4e-08
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
 Frame = -1

Query: 427 YDLYIVGQGHHRNVRAFSSLLE-WCDCPELGVIGDMLASNNFSSGSSVLVVQQYGYGGMV 485
           +DL +VG+ H +         E W +CPELG IGDMLAS +F + +S+LVVQQ   GG  
Sbjct: 355 FDLVMVGREHPQTPSVLLKGHEKWSECPELGTIGDMLASPDFVTKASILVVQQQRIGGRF 176

Query: 486 SGNQPNHVSTN 496
             +  N +  N
Sbjct: 175 GKHTLNFMGPN 143


>BP031377 
          Length = 401

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = -3

Query: 427 YDLYIVGQGHHRNVRAFSSLLEWCDCPELGVIGDMLASNNFSSGSSVLVVQQ 478
           +D  IVG+ +       + L  W +  ELGVIGD+LAS +  + +S+LVVQQ
Sbjct: 393 FDFIIVGRRNGVKSEMTAGLENWTEYTELGVIGDLLASPDMETKASILVVQQ 238


>AV769827 
          Length = 438

 Score = 37.0 bits (84), Expect = 0.008
 Identities = 22/54 (40%), Positives = 30/54 (54%), Gaps = 1/54 (1%)
 Frame = -2

Query: 427 YDLYIVGQGHHRNVRAFSSLLEWCDCPELGVIGDMLASN-NFSSGSSVLVVQQY 479
           YDL IVG+G   +           +  ELG +GD+LAS+      SSVLV+QQ+
Sbjct: 374 YDLIIVGKGRFPSTMVAELAERHAEYAELGPVGDILASSTGHKMRSSVLVIQQH 213


>AW428780 
          Length = 330

 Score = 31.6 bits (70), Expect = 0.32
 Identities = 26/84 (30%), Positives = 44/84 (51%), Gaps = 5/84 (5%)
 Frame = +2

Query: 401 SISYSEVDV-HSSEDIPTILNDLDKFGYDLYIVGQGHHRNVRAFSSLLEWCDC----PEL 455
           ++ Y E D  + +E++ TI    +   Y+  IVG+G  + +   + +L   D      EL
Sbjct: 17  AVEYIEKDTCNIAEEVVTIGKGKE---YEFIIVGKG--QQILESTMMLNIQDSRLEHAEL 181

Query: 456 GVIGDMLASNNFSSGSSVLVVQQY 479
           G +GD+L S+     SSVLV+Q +
Sbjct: 182 GPVGDLLTSSGQGITSSVLVIQDH 253


>BP056393 
          Length = 421

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 409 VHSSEDIPTILNDLDKFGYDLYIVGQGHHR 438
           +H S++IPT L+D+D +G     +G+  HR
Sbjct: 79  LHGSQNIPTSLSDIDSYGN----IGRLDHR 2


>TC9091 similar to UP|Q9Y7R4 (Q9Y7R4) Set domain protein, transcriptional
           silencing, partial (4%)
          Length = 607

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 112 IVVPPTINVIYKPRKRFEQNKLKTIQKLRLDAELRILTCV 151
           +  PPT+    K R+ F ++KL  I   +L  +  I TC+
Sbjct: 241 VKAPPTLQRFAKTRRSFSRHKLILIVISQLFTQSNISTCI 122


>BP045175 
          Length = 339

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 65  TQDSLALVMILNTKGALALIMLNTSWDRKILSPPTHAVLTA 105
           T +  A+V++LN      +I++  SW    L PP    + A
Sbjct: 202 TSNKDAIVIVLNNTAKKKIILVRVSWPGGYLEPPISKAIHA 324


>TC14878 
          Length = 914

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 228 EAYDAVRVETLNVVSSYSTIHEDIYNSANEKRTSMIILPFHKHLS 272
           E  +++ ++    +  +   H  I N+ N   T  I+L FH H+S
Sbjct: 456 EVVNSIELQD*TTIHLF*VKHLKILNNCNRSTTLNILLNFHPHIS 322


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,558,666
Number of Sequences: 28460
Number of extensions: 89251
Number of successful extensions: 459
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of query: 505
length of database: 4,897,600
effective HSP length: 94
effective length of query: 411
effective length of database: 2,222,360
effective search space: 913389960
effective search space used: 913389960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)